Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013675

Physical Location & Seq

Genomic Coordinates Reverse (-)

16215137 .. 16219008

Gene Structure 3872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGTACAAAAACGGCCTCTTGATGATGAGCAAATATTTGTTTCTTTCAAGCACCCAAGACAAGTGGGGCACAGTAAAGAGCTAGTTTCTTTTTCAGAATCTGTTTTTCCCGAAGATGTTTCCGAGAAACCGCAGACTTTAGAGAATGGATGGGCAAAAGTCAATGATAAAGGTGAAGAGAAGCTTTCTGATGACATATTTTATGATCTTCCAAAAGGTGGTGAGGATGTTGAAACCAGTGGACCTGGAAGCTTTACCATCTCCTCATGGACCACAAGCAGTACCAGTGAAGAAGATTCTCTGTTGGAAGCACCATTTCATGGATCCTTCCCGGACTGCTTCAATCCTGAACGTCCAATAAGGACATTGGCTCAATCTGAGGATATTTATTCTTTTCTTTTGGATCACCCTCCTCGGAAGTCTGTCTCCATTGGACCAGAGCATCAAGCTGAGGTTCCACTGTGGGGTGCACAGGGAAACAATAATAATTCAAATAATTTAGATACATCTGAAGCAGTTTCAAACTCTGACCTTGAGGATGAGAAACGACTGATGGGGACCTGTGTTATTCCAATGCCTGATTCTGATTTATCTGCAGACACTGGTTGCATAGCTGGAATTGGTAGAACTGATTGCAGCTGTGAAGATGAGGATTCTGTTAGATGTGTCAGGCAGCACATTTTGGAAGCAAGAGAAAAACTTATAAAGACAATCGGGCCAAAGAGATTTGAGGAGCTAGGATTTAGTGACATGGGAGAGCAAGTTGCACAAAGATGGAGTGAAGAGGAGGAACAATTATTCCACCAGGTTGTCTTCTCAAATCCAGCATCGTTGGGCAAGAATTTCTGGGACAATCTTTCAACTGTCTTTCCCTCCCGGACAAAAAAGGAGATTGTCAGTTACTATTTCAATGTCTTTATGCTTGTGAAAAGGGCTGGGCAGAACAGGTATGACCCAATAAATGTCGACAGTGACAATGATGAATGGCAGGGCAGTAATGATTATGGTGACAATCAACTGGCAGTTACAGAGGATGAGGACTCAGTGGTTGAGTCTCCCATATGTCAAAATGTTCCTGGTTATTATCAAAGTTGGAAGGATAATTTGCAAGAGTACGATGAGGAAGTTGTGGATGATACTTGTGATGATAATGTCAATGTGGATATGTTTGGTGGGGGAACCAAGCAAATTTTAGATAGATGCTATGGGCTGGTTGACAACTGCAGTACCTGTCCCATAGCTCAGCTTCAGGATAAGATTTCTTGGGATGAAAAGGGAGATCAAGAAGTCCAAGATGATTCATGCACGTCCTTTGATGCAGCGGCTGCTTCACAAGAGAATCAGCTGAAGTCTGAGGAGGGGAATCATTGGTCGGGTGGTTTCAATGGATCTAGCAATCGAGGTGACCATGAATATGTCTTGGAGCCTTGTGATACGAAAATCTGGGATGCTGGGTATATGACTTGCCCTGAGAATAAGGTTGACTTCTTGCCAACTTGCAACATGATTGAAGAGGTTTTCGGGAAAGAGTCTTGGAATTACAAAGCAAGGGATGGCAAAAACTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

524

Amino Acids

58.73

Weight (kDa)

4.31

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14260 FvH4_5g14260
malus_domestica	MD14G1209100.v1.1
prunus_persica	Prupe.5G201500_v2.0.a1 Prupe.5G201500_v2.0.a1
pyrus_communis	pycom14g17290
rosa_chinensis	RchiOBHm_Chr7g0182651
rosa_laevigata	RLG00000005111
rosa_multiflora	Rmu_co8265785.1_g000001 Rmu_sc0004168.1_g000068 Rmu_sc0008579.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271090
rosa_rugosa	Rorug06G0448800
rosa_samantha	Rh7AG052700 Rh7BG052300 Rh7CG053800 Rh7DG052100
rosa_wichuraiana	Rw7G004290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	704
AccB7I	CCANNNNNTGG	2 cut(s)	218, 320
AccI	GTMKAC	1 cut(s)	966
AciI	CCGC	2 cut(s)	131, 1322
AclWI	GGATC	4 cut(s)	318, 331, 411, 1396
AcsI	RAATTY	2 cut(s)	841, 1188
AcuI	CTGAAG	3 cut(s)	531, 1232, 1367
AfaI	GTAC	4 cut(s)	6, 283, 1115, 1228
AfiI	CCNNNNNNNGG	3 cut(s)	218, 320, 464
AgsI	TTSAA	9 cut(s)	49, 233, 343, 492, 522, 861, 910, 1384, 1511
AjiI	CACGTC	1 cut(s)	1308
AjnI	CCWGG	3 cut(s)	244, 804, 1075
AjuI	GAANNNNNNNTTGG	2 cut(s)	565, 597
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	430, 1059
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	4 cut(s)	318, 331, 411, 1396
AlwNI	CAGNNNCTG	4 cut(s)	101, 602, 1230, 1325
AoxI	GGCC	2 cut(s)	14, 716
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	4 cut(s)	636, 673, 1319, 1325
ApoI	RAATTY	2 cut(s)	841, 1188
AspS9I	GGNCC	5 cut(s)	242, 270, 434, 558, 716
AsuC2I	CCSGG	2 cut(s)	332, 877
AsuHPI	GGTGA	5 cut(s)	185, 233, 398, 1019, 1415
AvaII	GGWCC	4 cut(s)	242, 270, 434, 558
BaeGI	GKGCMC	2 cut(s)	72, 472
BaeI	ACNNNNGTAYC	2 cut(s)	1210, 1243
BamHI	GGATCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	805
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	648, 685, 1312, 1331
BccI	CCATC	5 cut(s)	144, 266, 547, 768, 1547
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	246, 806, 1077
BcnI	CCSGG	2 cut(s)	332, 877
BcoDI	GTCTC	2 cut(s)	430, 1059
BfaI	CTAG	4 cut(s)	83, 737, 1392, 1570
BfmI	CTRYAG	2 cut(s)	594, 1222
BisI	GCNGC	5 cut(s)	637, 674, 1320, 1323, 1326
BlpI	GCTNAGC	1 cut(s)	1242
BlsI	GCNGC	5 cut(s)	638, 675, 1321, 1324, 1327
Bme1390I	CCNGG	5 cut(s)	246, 332, 806, 877, 1077
Bme18I	GGWCC	4 cut(s)	242, 270, 434, 558
BmgBI	CACGTC	1 cut(s)	1308
BmgT120I	GGNCC	5 cut(s)	242, 270, 434, 558, 716
BmiI	GGNNCC	5 cut(s)	325, 456, 559, 1180, 1425
BmrFI	CCNGG	5 cut(s)	246, 332, 806, 877, 1077
BmsI	GCATC	5 cut(s)	451, 836, 1190, 1306, 1438
BpiI	GAAGAC	1 cut(s)	805
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	1242
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	332, 877
BsaJI	CCNNGG	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 320, 464
Bse1I	ACTGG	4 cut(s)	237, 285, 607, 1023
BseBI	CCWGG	3 cut(s)	246, 806, 1077
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	8 cut(s)	155, 232, 544, 1039, 1138, 1273, 1453, 1558
BseLI	CCNNNNNNNGG	3 cut(s)	218, 320, 464
BseMII	CTCAG	6 cut(s)	369, 441, 1056, 1256, 1344, 1461
BseNI	ACTGG	4 cut(s)	237, 285, 607, 1023
BseRI	GAGGAG	5 cut(s)	253, 402, 746, 800, 1370
BseSI	GKGCMC	2 cut(s)	72, 472
BseXI	GCAGC	4 cut(s)	648, 685, 1312, 1331
BseYI	CCCAGC	2 cut(s)	935, 1451
BshFI	GGCC	2 cut(s)	16, 718
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	332, 877
BslFI	GGGAC	3 cut(s)	571, 863, 1218
BslI	CCNNNNNNNGG	3 cut(s)	218, 320, 464
BsmAI	GTCTC	2 cut(s)	430, 1059
BsmFI	GGGAC	3 cut(s)	571, 863, 1218
BsnI	GGCC	2 cut(s)	16, 718
Bsp1286I	GDGCHC	2 cut(s)	72, 472
Bsp143I	GATC	5 cut(s)	205, 323, 403, 1279, 1388
Bsp1720I	GCTNAGC	1 cut(s)	1242
BspACI	CCGC	2 cut(s)	131, 1322
BspANI	GGCC	2 cut(s)	16, 718
BspCNI	CTCAG	6 cut(s)	370, 442, 1055, 1255, 1345, 1462
BspLI	GGNNCC	5 cut(s)	325, 456, 559, 1180, 1425
BspMAI	CTGCAG	2 cut(s)	598, 1226
BspPI	GGATC	4 cut(s)	318, 331, 411, 1396
BsrI	ACTGG	4 cut(s)	237, 285, 607, 1023
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	5 cut(s)	205, 323, 403, 1279, 1388
Bst2UI	CCWGG	3 cut(s)	246, 806, 1077
Bst4CI	ACNGT	4 cut(s)	74, 462, 865, 971
Bst6I	CTCTTC	3 cut(s)	171, 777, 1506
BstAPI	GCANNNNNTGC	1 cut(s)	1325
BstDEI	CTNAG	6 cut(s)	378, 450, 1042, 1242, 1353, 1470
BstEII	GGTNACC	1 cut(s)	1403
BstF5I	GGATG	8 cut(s)	155, 232, 544, 1039, 1138, 1273, 1453, 1558
BstKTI	GATC	5 cut(s)	208, 326, 406, 1282, 1391
BstMAI	GTCTC	2 cut(s)	430, 1059
BstMBI	GATC	5 cut(s)	205, 323, 403, 1279, 1388
BstMWI	GCNNNNNNNGC	1 cut(s)	1325
BstNI	CCWGG	3 cut(s)	246, 806, 1077
BstPI	GGTNACC	1 cut(s)	1403
BstSCI	CCNGG	5 cut(s)	244, 330, 804, 875, 1075
BstSFI	CTRYAG	2 cut(s)	594, 1222
BstSLI	GKGCMC	2 cut(s)	72, 472
BstV1I	GCAGC	4 cut(s)	648, 685, 1312, 1331
BstV2I	GAAGAC	1 cut(s)	805
BstX2I	RGATCY	2 cut(s)	323, 1388
BstYI	RGATCY	2 cut(s)	323, 1388
BsuRI	GGCC	2 cut(s)	16, 718
BtrI	CACGTC	1 cut(s)	1308
BtsCI	GGATG	8 cut(s)	155, 232, 544, 1039, 1138, 1273, 1453, 1558
BtsIMutI	CAGTG	6 cut(s)	244, 292, 458, 600, 976, 1050
CaiI	CAGNNNCTG	4 cut(s)	101, 602, 1230, 1325
Cfr13I	GGNCC	5 cut(s)	242, 270, 434, 558, 716
CsiI	ACCWGGT	1 cut(s)	804
Csp6I	GTAC	4 cut(s)	5, 282, 1114, 1227
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	6 cut(s)	267, 320, 751, 1302, 1409, 1504
CviQI	GTAC	4 cut(s)	5, 282, 1114, 1227
DdeI	CTNAG	6 cut(s)	378, 450, 1042, 1242, 1353, 1470
DpnI	GATC	5 cut(s)	207, 325, 405, 1281, 1390
DpnII	GATC	5 cut(s)	205, 323, 403, 1279, 1388
Eam1104I	CTCTTC	3 cut(s)	171, 777, 1506
EarI	CTCTTC	3 cut(s)	171, 777, 1506
Eco47I	GGWCC	4 cut(s)	242, 270, 434, 558
Eco57I	CTGAAG	3 cut(s)	531, 1232, 1367
Eco91I	GGTNACC	1 cut(s)	1403
EcoO109I	RGGNCCY	1 cut(s)	558
EcoO65I	GGTNACC	1 cut(s)	1403
EcoRII	CCWGG	3 cut(s)	244, 804, 1075
FaeI	CATG	6 cut(s)	270, 323, 754, 1305, 1412, 1507
FalI	AAGNNNNNCTT	4 cut(s)	168, 200, 1469, 1501
FaqI	GGGAC	3 cut(s)	571, 863, 1218
FatI	CATG	6 cut(s)	266, 319, 750, 1301, 1408, 1503
FauNDI	CATATG	1 cut(s)	1061
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	5 cut(s)	637, 674, 1320, 1323, 1326
FokI	GGATG	8 cut(s)	162, 239, 551, 1046, 1145, 1280, 1460, 1565
Fsp4HI	GCNGC	5 cut(s)	637, 674, 1320, 1323, 1326
FspBI	CTAG	4 cut(s)	83, 737, 1392, 1570
GluI	GCNGC	5 cut(s)	637, 674, 1320, 1323, 1326
GsaI	CCCAGC	2 cut(s)	939, 1455
HaeIII	GGCC	2 cut(s)	16, 718
HapII	CCGG	2 cut(s)	332, 877
Hin1II	CATG	6 cut(s)	270, 323, 754, 1305, 1412, 1507
HincII	GTYRAC	3 cut(s)	967, 1216, 1483
HindII	GTYRAC	3 cut(s)	967, 1216, 1483
HindIII	AAGCTT	2 cut(s)	182, 250
HpaII	CCGG	2 cut(s)	332, 877
HphI	GGTGA	5 cut(s)	185, 233, 398, 1019, 1415
Hpy166II	GTNNAC	5 cut(s)	242, 470, 967, 1216, 1483
Hpy188I	TCNGA	9 cut(s)	97, 124, 190, 379, 417, 511, 529, 586, 1354
Hpy188III	TCNNGA	6 cut(s)	20, 110, 347, 1250, 1283, 1522
Hpy8I	GTNNAC	5 cut(s)	242, 470, 967, 1216, 1483
HpyAV	CCTTC	2 cut(s)	337, 1090
HpyCH4III	ACNGT	4 cut(s)	74, 462, 865, 971
HpyCH4IV	ACGT	2 cut(s)	352, 1307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1325
HpyF3I	CTNAG	6 cut(s)	378, 450, 1042, 1242, 1353, 1470
HpySE526I	ACGT	2 cut(s)	352, 1307
Hsp92II	CATG	6 cut(s)	270, 323, 754, 1305, 1412, 1507
Kzo9I	GATC	5 cut(s)	205, 323, 403, 1279, 1388
LmnI	GCTCC	2 cut(s)	733, 1423
Lsp1109I	GCAGC	4 cut(s)	648, 685, 1312, 1331
LweI	GCATC	5 cut(s)	451, 836, 1190, 1306, 1438
MabI	ACCWGGT	1 cut(s)	804
MaeI	CTAG	4 cut(s)	83, 737, 1392, 1570
MaeII	ACGT	2 cut(s)	352, 1307
MaeIII	GTNAC	6 cut(s)	746, 899, 971, 1007, 1024, 1403
MalI	GATC	5 cut(s)	207, 325, 405, 1281, 1390
MboI	GATC	5 cut(s)	205, 323, 403, 1279, 1388
MboII	GAAGA	9 cut(s)	125, 188, 200, 302, 305, 656, 794, 805, 1523
MflI	RGATCY	2 cut(s)	323, 1388
MhlI	GDGCHC	2 cut(s)	72, 472
MluCI	AATT	8 cut(s)	487, 496, 618, 794, 841, 1102, 1188, 1537
MlyI	GAGTC	3 cut(s)	1034, 1061, 1538
MmeI	TCCRAC	2 cut(s)	285, 1073
MslI	CAYNNNNRTG	2 cut(s)	772, 1413
MspA1I	CMGCKG	3 cut(s)	639, 1322, 1345
MspI	CCGG	2 cut(s)	332, 877
MspR9I	CCNGG	5 cut(s)	246, 332, 806, 877, 1077
MvaI	CCWGG	3 cut(s)	246, 806, 1077
MwoI	GCNNNNNNNGC	1 cut(s)	1325
NciI	CCSGG	2 cut(s)	332, 877
NdeI	CATATG	1 cut(s)	1061
NdeII	GATC	5 cut(s)	205, 323, 403, 1279, 1388
NlaIII	CATG	6 cut(s)	270, 323, 754, 1305, 1412, 1507
NlaIV	GGNNCC	5 cut(s)	325, 456, 559, 1180, 1425
NmuCI	GTSAC	4 cut(s)	746, 971, 1007, 1403
PfeI	GAWTC	7 cut(s)	98, 296, 581, 653, 1298, 1339, 1363
PflMI	CCANNNNNTGG	2 cut(s)	218, 320
PfoI	TCCNGGA	2 cut(s)	330, 875
PkrI	GCNGC	5 cut(s)	638, 675, 1321, 1324, 1327
PleI	GAGTC	3 cut(s)	1034, 1060, 1537
PpsI	GAGTC	3 cut(s)	1034, 1060, 1537
PpuMI	RGGWCCY	1 cut(s)	558
PsiI	TTATAA	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	558
Psp6I	CCWGG	3 cut(s)	244, 804, 1075
PspEI	GGTNACC	1 cut(s)	1403
PspFI	CCCAGC	2 cut(s)	935, 1451
PspGI	CCWGG	3 cut(s)	244, 804, 1075
PspN4I	GGNNCC	5 cut(s)	325, 456, 559, 1180, 1425
PspPI	GGNCC	5 cut(s)	242, 270, 434, 558, 716
PspPPI	RGGWCCY	1 cut(s)	558
PstI	CTGCAG	2 cut(s)	598, 1226
PstNI	CAGNNNCTG	4 cut(s)	101, 602, 1230, 1325
PsuI	RGATCY	2 cut(s)	323, 1388
PvuII	CAGCTG	2 cut(s)	639, 1345
RsaI	GTAC	4 cut(s)	6, 283, 1115, 1228
RsaNI	GTAC	4 cut(s)	5, 282, 1114, 1227
RseI	CAYNNNNRTG	2 cut(s)	772, 1413
SalI	GTCGAC	1 cut(s)	965
SatI	GCNGC	5 cut(s)	637, 674, 1320, 1323, 1326
Sau3AI	GATC	5 cut(s)	205, 323, 403, 1279, 1388
Sau96I	GGNCC	5 cut(s)	242, 270, 434, 558, 716
SchI	GAGTC	3 cut(s)	1034, 1061, 1538
ScrFI	CCNGG	5 cut(s)	246, 332, 806, 877, 1077
SduI	GDGCHC	2 cut(s)	72, 472
SexAI	ACCWGGT	1 cut(s)	804
SfaNI	GCATC	5 cut(s)	451, 836, 1190, 1306, 1438
SfcI	CTRYAG	2 cut(s)	594, 1222
SinI	GGWCC	4 cut(s)	242, 270, 434, 558
SmiMI	CAYNNNNRTG	2 cut(s)	772, 1413
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	8 cut(s)	487, 496, 618, 794, 841, 1102, 1188, 1537
SsiI	CCGC	2 cut(s)	131, 1322
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	4 cut(s)	83, 737, 1392, 1570
StyD4I	CCNGG	5 cut(s)	244, 330, 804, 875, 1075
TaaI	ACNGT	4 cut(s)	74, 462, 865, 971
TaiI	ACGT	2 cut(s)	355, 1310
TaqI	TCGA	2 cut(s)	966, 1399
TasI	AATT	8 cut(s)	487, 496, 618, 794, 841, 1102, 1188, 1537
TauI	GCSGC	1 cut(s)	1325
TfiI	GAWTC	7 cut(s)	98, 296, 581, 653, 1298, 1339, 1363
TscAI	CASTG	6 cut(s)	244, 292, 465, 607, 976, 1050
TseFI	GTSAC	4 cut(s)	746, 971, 1007, 1403
TseI	GCWGC	4 cut(s)	636, 673, 1319, 1325
Tsp45I	GTSAC	4 cut(s)	746, 971, 1007, 1403
TspDTI	ATGAA	5 cut(s)	308, 996, 1284, 1290, 1425
TspRI	CASTG	6 cut(s)	244, 292, 465, 607, 976, 1050
Van91I	CCANNNNNTGG	2 cut(s)	218, 320
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	4 cut(s)	242, 270, 434, 558
XapI	RAATTY	2 cut(s)	841, 1188
XmiI	GTMKAC	1 cut(s)	966
XspI	CTAG	4 cut(s)	83, 737, 1392, 1570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.