Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013675

Physical Location & Seq

Genomic Coordinates Forward (+)

57894201 .. 57895919

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0448800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTCGCGTCTACGTTGGGAACTTGAGTTCTCGAGTTTCGGAGGGGGAGCTCGAAGATGAGTTTCGCAATTTCGGAGTTATAAGAAGTGTGTGGGTTGCAAGGAGGCCACCGGGTTATGCTTTCGTCGACTTTGATGACAGCCGAGATGCCGAGGATGCCATTCGTGAACTAGATGGCAAGAATGGCTGGAGAGTTGAGCTTTCACACAACTCTAGAGGTGGTGGTGGTGGTGGTGGTCGTGGCGGAGGAGGTCGTGGACGTTCTGGCGGTTCTGATTTGAAGTGCTACGAGTGTGGCGAGCCAGGTCATTTTGCTCGTGAATGCCGTCTGCGTGGTGGTTCTGGAAGGCGTCGTAGCCGCAGCCCACCTAGATATCGCAGAAGTCCTAGCTATGGCAGGAGGAGCTATAGTCCACGTGGGCGCTCTCCCCCACCCAGACGTCGCAGTTTGACACCACCCCGGGGTGGGCACAGCCGTAGCAGGTCTCCACCATACCGTGGACGGGACGAGTTGCCATATGCAAATGGTAATGGCTTGAAGGATCGACGCAGAAGCAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

188

Amino Acids

20.95

Weight (kDa)

11.3

Isoelectric Point (pI)

104.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	4e-17	RNA recognition motif
zf-CCHC	PF00098	95 - 110	1.1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14260 FvH4_5g14260
malus_domestica	MD14G1209100.v1.1
prunus_persica	Prupe.5G201500_v2.0.a1 Prupe.5G201500_v2.0.a1
pyrus_communis	pycom14g17290
rosa_chinensis	RchiOBHm_Chr7g0182651
rosa_laevigata	RLG00000005111
rosa_multiflora	Rmu_co8265785.1_g000001 Rmu_sc0004168.1_g000068 Rmu_sc0008579.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271090
rosa_rugosa	Rorug06G0448800
rosa_samantha	Rh7AG052700 Rh7BG052300 Rh7CG053800 Rh7DG052100
rosa_wichuraiana	Rw7G004290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AatII	GACGTC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	474
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	2 cut(s)	12, 129
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	246, 270, 361
AclWI	GGATC	1 cut(s)	552
AcvI	CACGTG	1 cut(s)	419
AcyI	GRCGYC	2 cut(s)	352, 442
AfiI	CCNNNNNNNGG	6 cut(s)	395, 464, 467, 468, 500, 505
AgsI	TTSAA	2 cut(s)	283, 541
AjnI	CCWGG	1 cut(s)	304
AloI	GAACNNNNNNTCC	2 cut(s)	13, 45
AluBI	AGCT	4 cut(s)	52, 202, 393, 408
AluI	AGCT	4 cut(s)	52, 202, 393, 408
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	9, 492
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	2 cut(s)	33, 462
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	426
AsuC2I	CCSGG	3 cut(s)	114, 463, 464
AvaI	CYCGRG	2 cut(s)	33, 462
BaeGI	GKGCMC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	312, 462
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	3 cut(s)	114, 463, 464
BcoDI	GTCTC	2 cut(s)	9, 492
BfaI	CTAG	4 cut(s)	173, 216, 372, 390
BfmI	CTRYAG	1 cut(s)	409
BfoI	RGCGCY	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	2 cut(s)	361, 364
BlsI	GCNGC	2 cut(s)	362, 365
Bme1390I	CCNGG	4 cut(s)	114, 306, 463, 464
BmeT110I	CYCGRG	2 cut(s)	33, 462
BmrFI	CCNGG	4 cut(s)	114, 306, 463, 464
BmsI	GCATC	2 cut(s)	139, 148
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	3 cut(s)	114, 463, 464
BsaAI	YACGTR	1 cut(s)	419
BsaHI	GRCGYC	2 cut(s)	352, 442
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	5 cut(s)	153, 461, 462, 463, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	6 cut(s)	395, 464, 467, 468, 500, 505
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	5 cut(s)	153, 461, 462, 463, 499
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	6 cut(s)	395, 464, 467, 468, 500, 505
BseRI	GAGGAG	2 cut(s)	264, 418
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	2 cut(s)	33, 462
BsiSI	CCGG	2 cut(s)	113, 463
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	6 cut(s)	395, 464, 467, 468, 500, 505
BsmAI	GTCTC	2 cut(s)	9, 492
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	2 cut(s)	33, 462
Bsp1286I	GDGCHC	2 cut(s)	54, 474
Bsp143I	GATC	1 cut(s)	544
BspACI	CCGC	3 cut(s)	246, 270, 361
BspANI	GGCC	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	1 cut(s)	552
BspTNI	GGTCTC	1 cut(s)	492
BssECI	CCNNGG	5 cut(s)	153, 461, 462, 463, 499
BssMI	GATC	1 cut(s)	544
BssNI	GRCGYC	2 cut(s)	352, 442
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	500
BstACI	GRCGYC	2 cut(s)	352, 442
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	302
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	2 cut(s)	9, 492
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 186, 405
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	4 cut(s)	112, 304, 461, 462
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	474
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	426
Cfr9I	CCCGGG	1 cut(s)	462
CseI	GACGC	2 cut(s)	341, 558
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
EciI	GGCGGA	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	419
Eco88I	CYCGRG	2 cut(s)	33, 462
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	54
FaiI	YATR	7 cut(s)	83, 120, 396, 411, 496, 520, 522
FaqI	GGGAC	1 cut(s)	521
FauNDI	CATATG	1 cut(s)	520
FblI	GTMKAC	2 cut(s)	12, 129
Fnu4HI	GCNGC	2 cut(s)	361, 364
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	361, 364
FspBI	CTAG	4 cut(s)	173, 216, 372, 390
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	2 cut(s)	361, 364
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	2 cut(s)	113, 463
HgaI	GACGC	2 cut(s)	341, 558
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	2 cut(s)	352, 442
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HpaII	CCGG	2 cut(s)	113, 463
Hpy166II	GTNNAC	6 cut(s)	13, 130, 170, 260, 416, 503
Hpy188I	TCNGA	3 cut(s)	43, 77, 277
Hpy188III	TCNNGA	5 cut(s)	33, 167, 216, 320, 345
Hpy8I	GTNNAC	6 cut(s)	13, 130, 170, 260, 416, 503
Hpy99I	CGWCG	4 cut(s)	131, 357, 447, 552
HpyAV	CCTTC	2 cut(s)	342, 535
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	4 cut(s)	15, 262, 418, 442
HpyCH4V	TGCA	2 cut(s)	101, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 186, 405
HpySE526I	ACGT	4 cut(s)	15, 262, 418, 442
Hsp92I	GRCGYC	2 cut(s)	352, 442
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	2 cut(s)	49, 405
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	2 cut(s)	139, 148
MaeI	CTAG	4 cut(s)	173, 216, 372, 390
MaeII	ACGT	4 cut(s)	15, 262, 418, 442
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MboII	GAAGA	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	54, 474
MluCI	AATT	1 cut(s)	70
MnlI	CCTC	7 cut(s)	37, 99, 148, 212, 242, 245, 396
MspI	CCGG	2 cut(s)	113, 463
MspR9I	CCNGG	4 cut(s)	114, 306, 463, 464
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	158, 186, 405
NciI	CCSGG	3 cut(s)	114, 463, 464
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	1 cut(s)	544
NmeAIII	GCCGAG	2 cut(s)	170, 178
PaeR7I	CTCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 325
PctI	GAATGC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	362, 365
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	419
PsiI	TTATAA	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	304
PspCI	CACGTG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	2 cut(s)	361, 364
Sau3AI	GATC	1 cut(s)	544
ScrFI	CCNGG	4 cut(s)	114, 306, 463, 464
SduI	GDGCHC	2 cut(s)	54, 474
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	33
SmaI	CCCGGG	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	25, 33
SmoI	CTYRAG	2 cut(s)	25, 33
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	3 cut(s)	246, 270, 361
SspMI	CTAG	4 cut(s)	173, 216, 372, 390
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	112, 304, 461, 462
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	4 cut(s)	18, 265, 421, 445
TaqI	TCGA	4 cut(s)	34, 54, 129, 547
TasI	AATT	1 cut(s)	70
TauI	GCSGC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	363
TspMI	CCCGGG	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	500
XbaI	TCTAGA	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	462
XmiI	GTMKAC	2 cut(s)	12, 129
XspI	CTAG	4 cut(s)	173, 216, 372, 390
ZraI	GACGTC	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.