Rmu_sc0008579.1_g000001
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008579.1
OG0013675
Physical Location & Seq
Forward (+)
1 .. 621
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008579.1_g000001.1.cds

Sequence Viewer

Length: 553 bp
cccagagtacttcaatccggagcgcccaataaggactttagcttccgaggagatttattcttttcttttggatcaccctccgaggaagtcggcttccattggaccagagcatcaagctgttattccacaatggggcgcacatggagctaataatacttcaagttatttagatacgtttcaagcagttgttgactctgaagttgagaacgataaacgactgatgggcacttgtgttattccaatgcctgattctgaattatcaactgacggtgaatgcgtagttggaaatggtagaactgattgcagctgtgaagataaggcttccgtcagatgtgtcaggcagcacattctggaagcaagagagaaatttataaaggacattgggacagagagatttgcggggctaggattttgtgacatgggagagcaagtggctgagaaatggagtgacgaggaggaaaaattattccaccaggttgtgttctcaaatccagcatcatcggacaagaatttctgggacaatctttcagcgagctcggcagaacagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

183

Amino Acids

20.42

Weight (kDa)

4.64

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 1 cut(s) 399
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 2 cut(s) 366, 509
AcuI CTGAAG 1 cut(s) 217
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 3 cut(s) 14, 160, 180
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 4 cut(s) 233, 265, 265, 297
AluBI AGCT 5 cut(s) 42, 117, 147, 307, 535
AluI AGCT 5 cut(s) 42, 117, 147, 307, 535
Alw21I GWGCWC 1 cut(s) 537
AlwI GGATC 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 304, 341
ApoI RAATTY 2 cut(s) 366, 509
AspLEI GCGC 2 cut(s) 25, 138
AspS9I GGNCC 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 66, 282
AvaII GGWCC 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 316, 353
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 474
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 2 cut(s) 305, 342
BlsI GCNGC 2 cut(s) 306, 343
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 2 cut(s) 119, 504
BsaJI CCNNGG 2 cut(s) 46, 81
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 46, 81
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 63, 468
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 316, 353
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 2 cut(s) 398, 531
BslI CCNNNNNNNGG 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 398, 531
BsmI GAATGC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 228, 537
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 428
BspEI TCCGGA 1 cut(s) 17
BspPI GGATC 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 46, 81
BssMI GATC 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 1 cut(s) 436
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 138
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 144, 537
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 316, 353
Cac8I GCNNGC 1 cut(s) 533
CfoI GCGC 2 cut(s) 25, 138
Cfr13I GGNCC 1 cut(s) 102
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 141, 419
CviJI RGCY 9 cut(s) 42, 93, 117, 147, 307, 321, 404, 435, 535
CviKI_1 RGCY 9 cut(s) 42, 93, 117, 147, 307, 321, 404, 435, 535
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 436
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 537
FaeI CATG 2 cut(s) 144, 422
FaiI YATR 4 cut(s) 142, 372, 420, 551
FaqI GGGAC 2 cut(s) 398, 531
FatI CATG 2 cut(s) 140, 418
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 2 cut(s) 305, 342
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 2 cut(s) 305, 342
FspBI CTAG 1 cut(s) 405
GlaI GCGC 2 cut(s) 24, 137
GluI GCNGC 2 cut(s) 305, 342
HaeII RGCGCY 1 cut(s) 26
HapII CCGG 1 cut(s) 18
HhaI GCGC 2 cut(s) 25, 138
Hin1II CATG 2 cut(s) 144, 422
Hin6I GCGC 2 cut(s) 23, 136
HinP1I GCGC 2 cut(s) 23, 136
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 2 cut(s) 192, 249
HpaII CCGG 1 cut(s) 18
HphI GGTGA 2 cut(s) 66, 282
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 6 cut(s) 47, 82, 197, 254, 330, 503
Hpy188III TCNNGA 2 cut(s) 18, 351
Hpy8I GTNNAC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 537
HpyF3I CTNAG 1 cut(s) 436
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 144, 422
HspAI GCGC 2 cut(s) 23, 136
Kpn2I TCCGGA 1 cut(s) 17
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 20, 144
Lsp1109I GCAGC 2 cut(s) 316, 353
LweI GCATC 2 cut(s) 119, 504
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 414, 447
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 1 cut(s) 324
MhlI GDGCHC 2 cut(s) 228, 537
MluCI AATT 4 cut(s) 255, 366, 462, 509
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 5 cut(s) 41, 76, 88, 446, 449
MroI TCCGGA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 279
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 144, 537
NdeII GATC 1 cut(s) 71
NlaIII CATG 2 cut(s) 144, 422
NmeAIII GCCGAG 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 414, 447
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 306, 343
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PsiI TTATAA 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspPI GGNCC 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacI GAGCTC 1 cut(s) 537
SatI GCNGC 2 cut(s) 305, 342
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 9
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 2 cut(s) 228, 537
SetI ASST 7 cut(s) 44, 119, 149, 177, 309, 478, 537
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 2 cut(s) 119, 504
SinI GGWCC 1 cut(s) 102
Sse9I AATT 4 cut(s) 255, 366, 462, 509
SsiI CCGC 1 cut(s) 399
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 177
TasI AATT 4 cut(s) 255, 366, 462, 509
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 249
TseFI GTSAC 2 cut(s) 414, 447
TseI GCWGC 2 cut(s) 304, 341
Tsp45I GTSAC 2 cut(s) 414, 447
TspGWI ACGGA 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 2 cut(s) 366, 509
XspI CTAG 1 cut(s) 405
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.