SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g14260 FvH4_5g14260 |
| malus_domestica | MD14G1209100.v1.1 |
| prunus_persica | Prupe.5G201500_v2.0.a1 Prupe.5G201500_v2.0.a1 |
| pyrus_communis | pycom14g17290 |
| rosa_chinensis | RchiOBHm_Chr7g0182651 |
| rosa_laevigata | RLG00000005111 |
| rosa_multiflora | Rmu_co8265785.1_g000001 Rmu_sc0004168.1_g000068 Rmu_sc0008579.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00271090 |
| rosa_rugosa | Rorug06G0448800 |
| rosa_samantha | Rh7AG052700 Rh7BG052300 Rh7CG053800 Rh7DG052100 |
| rosa_wichuraiana | Rw7G004290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 2 cut(s) | 64, 191 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 183, 196, 215, 228 |
| AluBI | AGCT | 3 cut(s) | 6, 22, 79 |
| AluI | AGCT | 3 cut(s) | 6, 22, 79 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 208 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| AsuNHI | GCTAGC | 1 cut(s) | 2 |
| BbvCI | CCTCAGC | 1 cut(s) | 23 |
| BccI | CCATC | 1 cut(s) | 230 |
| BfaI | CTAG | 3 cut(s) | 3, 72, 80 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BmsI | GCATC | 1 cut(s) | 103 |
| BmtI | GCTAGC | 1 cut(s) | 6 |
| Bpu10I | CCTNAGC | 1 cut(s) | 23 |
| BsaAI | YACGTR | 1 cut(s) | 144 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseMII | CTCAG | 1 cut(s) | 14 |
| BseYI | CCCAGC | 1 cut(s) | 131 |
| BslFI | GGGAC | 2 cut(s) | 82, 140 |
| BsmFI | GGGAC | 2 cut(s) | 82, 140 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| BspCNI | CTCAG | 1 cut(s) | 15 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BspOI | GCTAGC | 1 cut(s) | 6 |
| BssMI | GATC | 1 cut(s) | 40 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstBAI | YACGTR | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 2 cut(s) | 4, 77 |
| BstDEI | CTNAG | 1 cut(s) | 23 |
| BstEII | GGTNACC | 1 cut(s) | 83 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstPI | GGTNACC | 1 cut(s) | 83 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| Cac8I | GCNNGC | 2 cut(s) | 4, 77 |
| CseI | GACGC | 1 cut(s) | 137 |
| CviAII | CATG | 1 cut(s) | 89 |
| CviJI | RGCY | 4 cut(s) | 6, 22, 79, 106 |
| CviKI_1 | RGCY | 4 cut(s) | 6, 22, 79, 106 |
| DdeI | CTNAG | 1 cut(s) | 23 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| Eco91I | GGTNACC | 1 cut(s) | 83 |
| EcoO65I | GGTNACC | 1 cut(s) | 83 |
| FaeI | CATG | 1 cut(s) | 92 |
| FaiI | YATR | 3 cut(s) | 90, 96, 185 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 149, 181 |
| FaqI | GGGAC | 2 cut(s) | 82, 140 |
| FatI | CATG | 1 cut(s) | 88 |
| FokI | GGATG | 1 cut(s) | 248 |
| FspBI | CTAG | 3 cut(s) | 3, 72, 80 |
| GsaI | CCCAGC | 1 cut(s) | 135 |
| HgaI | GACGC | 1 cut(s) | 137 |
| Hin1II | CATG | 1 cut(s) | 92 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HinfI | GANTC | 1 cut(s) | 209 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 1 cut(s) | 163 |
| Hpy188I | TCNGA | 1 cut(s) | 31 |
| Hpy8I | GTNNAC | 1 cut(s) | 163 |
| HpyCH4IV | ACGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 1 cut(s) | 180 |
| HpyF3I | CTNAG | 1 cut(s) | 23 |
| HpySE526I | ACGT | 1 cut(s) | 143 |
| Hsp92II | CATG | 1 cut(s) | 92 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LmnI | GCTCC | 2 cut(s) | 11, 103 |
| LpnPI | CCDG | 1 cut(s) | 117 |
| LweI | GCATC | 1 cut(s) | 103 |
| MaeI | CTAG | 3 cut(s) | 3, 72, 80 |
| MaeII | ACGT | 1 cut(s) | 143 |
| MaeIII | GTNAC | 1 cut(s) | 83 |
| MalI | GATC | 1 cut(s) | 42 |
| MboI | GATC | 1 cut(s) | 40 |
| MboII | GAAGA | 1 cut(s) | 203 |
| MnlI | CCTC | 2 cut(s) | 18, 187 |
| MroXI | GAANNNNTTC | 1 cut(s) | 208 |
| MslI | CAYNNNNRTG | 1 cut(s) | 93 |
| MspA1I | CMGCKG | 1 cut(s) | 22 |
| NdeII | GATC | 1 cut(s) | 40 |
| NheI | GCTAGC | 1 cut(s) | 2 |
| NlaIII | CATG | 1 cut(s) | 92 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NmuCI | GTSAC | 1 cut(s) | 83 |
| PdmI | GAANNNNTTC | 1 cut(s) | 208 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| Ppu21I | YACGTR | 1 cut(s) | 144 |
| PspEI | GGTNACC | 1 cut(s) | 83 |
| PspFI | CCCAGC | 1 cut(s) | 131 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PvuII | CAGCTG | 1 cut(s) | 22 |
| RseI | CAYNNNNRTG | 1 cut(s) | 93 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| SetI | ASST | 8 cut(s) | 8, 24, 29, 81, 85, 146, 162, 198 |
| SfaNI | GCATC | 1 cut(s) | 103 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 93 |
| SmlI | CTYRAG | 1 cut(s) | 247 |
| SmoI | CTYRAG | 1 cut(s) | 247 |
| SspMI | CTAG | 3 cut(s) | 3, 72, 80 |
| TaiI | ACGT | 1 cut(s) | 146 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| TseFI | GTSAC | 1 cut(s) | 83 |
| Tsp45I | GTSAC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 1 cut(s) | 105 |
| XmnI | GAANNNNTTC | 1 cut(s) | 208 |
| XspI | CTAG | 3 cut(s) | 3, 72, 80 |