SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g14260 FvH4_5g14260 |
| malus_domestica | MD14G1209100.v1.1 |
| prunus_persica | Prupe.5G201500_v2.0.a1 Prupe.5G201500_v2.0.a1 |
| pyrus_communis | pycom14g17290 |
| rosa_chinensis | RchiOBHm_Chr7g0182651 |
| rosa_laevigata | RLG00000005111 |
| rosa_multiflora | Rmu_co8265785.1_g000001 Rmu_sc0004168.1_g000068 Rmu_sc0008579.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00271090 |
| rosa_rugosa | Rorug06G0448800 |
| rosa_samantha | Rh7AG052700 Rh7BG052300 Rh7CG053800 Rh7DG052100 |
| rosa_wichuraiana | Rw7G004290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 506 |
| AccI | GTMKAC | 1 cut(s) | 1152 |
| AccII | CGCG | 3 cut(s) | 474, 1063, 1389 |
| AccIII | TCCGGA | 1 cut(s) | 535 |
| AciI | CCGC | 5 cut(s) | 917, 1049, 1387, 1389, 1410 |
| AclWI | GGATC | 3 cut(s) | 118, 597, 1253 |
| AcsI | RAATTY | 3 cut(s) | 91, 1027, 1393 |
| AcuI | CTGAAG | 1 cut(s) | 309 |
| AfaI | GTAC | 2 cut(s) | 195, 527 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 404, 506, 650 |
| AgsI | TTSAA | 6 cut(s) | 532, 678, 698, 1096, 1573, 1700 |
| AjnI | CCWGG | 6 cut(s) | 430, 990, 1140, 1204, 1243, 1261 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 751, 783, 783, 815, 1692, 1705, 1724, 1737 |
| Alw21I | GWGCWC | 4 cut(s) | 208, 430, 658, 1123 |
| Alw26I | GTCTC | 1 cut(s) | 159 |
| Alw44I | GTGCAC | 2 cut(s) | 426, 654 |
| AlwI | GGATC | 3 cut(s) | 118, 597, 1253 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| Aor13HI | TCCGGA | 1 cut(s) | 535 |
| ApaLI | GTGCAC | 2 cut(s) | 426, 654 |
| ApeKI | GCWGC | 4 cut(s) | 50, 435, 822, 859 |
| ApoI | RAATTY | 3 cut(s) | 91, 1027, 1393 |
| AseI | ATTAAT | 2 cut(s) | 186, 417 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1717 |
| AspLEI | GCGC | 1 cut(s) | 543 |
| AspS9I | GGNCC | 3 cut(s) | 456, 620, 1474 |
| AsuHPI | GGTGA | 8 cut(s) | 371, 389, 584, 800, 1205, 1222, 1298, 1604 |
| AvaII | GGWCC | 3 cut(s) | 456, 620, 1474 |
| BaeGI | GKGCMC | 3 cut(s) | 430, 658, 746 |
| BanII | GRGCYC | 1 cut(s) | 1123 |
| BbsI | GAAGAC | 4 cut(s) | 386, 991, 1045, 1446 |
| Bbv12I | GWGCWC | 4 cut(s) | 208, 430, 658, 1123 |
| BbvCI | CCTCAGC | 2 cut(s) | 1109, 1532 |
| BbvI | GCAGC | 4 cut(s) | 37, 447, 834, 871 |
| BccI | CCATC | 2 cut(s) | 733, 1739 |
| BciT130I | CCWGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| BciVI | GTATCC | 1 cut(s) | 319 |
| BcoDI | GTCTC | 1 cut(s) | 159 |
| BfaI | CTAG | 6 cut(s) | 170, 272, 390, 923, 1581, 1589 |
| BfoI | RGCGCY | 1 cut(s) | 544 |
| BfuI | GTATCC | 1 cut(s) | 319 |
| BglII | AGATCT | 2 cut(s) | 146, 166 |
| BisI | GCNGC | 5 cut(s) | 51, 436, 823, 860, 1387 |
| BlsI | GCNGC | 5 cut(s) | 52, 437, 824, 861, 1388 |
| BmcAI | AGTACT | 1 cut(s) | 527 |
| Bme1390I | CCNGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| Bme18I | GGWCC | 3 cut(s) | 456, 620, 1474 |
| BmgT120I | GGNCC | 3 cut(s) | 456, 620, 1474 |
| BmiI | GGNNCC | 3 cut(s) | 458, 1414, 1614 |
| BmrFI | CCNGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| BmsI | GCATC | 5 cut(s) | 23, 637, 1022, 1373, 1612 |
| BpiI | GAAGAC | 4 cut(s) | 386, 991, 1045, 1446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 870, 902 |
| BpmI | CTGGAG | 3 cut(s) | 56, 321, 375 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1109, 1532 |
| BpuEI | CTTGAG | 1 cut(s) | 740 |
| BsaAI | YACGTR | 1 cut(s) | 1653 |
| BsaJI | CCNNGG | 5 cut(s) | 564, 599, 1205, 1262, 1387 |
| BsaWI | WCCGGW | 1 cut(s) | 535 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 933, 963 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 404, 506, 650 |
| Bse1I | ACTGG | 4 cut(s) | 73, 358, 423, 1416 |
| Bse3DI | GCAATG | 1 cut(s) | 1443 |
| BseAI | TCCGGA | 1 cut(s) | 535 |
| BseBI | CCWGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| BseDI | CCNNGG | 5 cut(s) | 564, 599, 1205, 1262, 1387 |
| BseGI | GGATG | 5 cut(s) | 1225, 1315, 1324, 1459, 1750 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 404, 506, 650 |
| BseMI | GCAATG | 1 cut(s) | 1443 |
| BseMII | CTCAG | 5 cut(s) | 15, 332, 945, 1100, 1523 |
| BseNI | ACTGG | 4 cut(s) | 73, 358, 423, 1416 |
| BseRI | GAGGAG | 1 cut(s) | 986 |
| BseSI | GKGCMC | 3 cut(s) | 430, 658, 746 |
| BseXI | GCAGC | 4 cut(s) | 37, 447, 834, 871 |
| BseYI | CCCAGC | 2 cut(s) | 461, 1640 |
| Bsh1236I | CGCG | 3 cut(s) | 474, 1063, 1389 |
| BsiHKAI | GWGCWC | 4 cut(s) | 208, 430, 658, 1123 |
| BsiSI | CCGG | 2 cut(s) | 536, 1010 |
| BslFI | GGGAC | 6 cut(s) | 270, 916, 1049, 1404, 1591, 1649 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 404, 506, 650 |
| BsmAI | GTCTC | 1 cut(s) | 159 |
| BsmBI | CGTCTC | 1 cut(s) | 159 |
| BsmFI | GGGAC | 6 cut(s) | 270, 916, 1049, 1404, 1591, 1649 |
| BsmI | GAATGC | 1 cut(s) | 797 |
| Bsp1286I | GDGCHC | 5 cut(s) | 208, 430, 658, 746, 1123 |
| Bsp13I | TCCGGA | 1 cut(s) | 535 |
| Bsp143I | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| Bsp68I | TCGCGA | 2 cut(s) | 474, 1063 |
| BspACI | CCGC | 5 cut(s) | 917, 1049, 1387, 1389, 1410 |
| BspCNI | CTCAG | 5 cut(s) | 16, 331, 946, 1101, 1524 |
| BspEI | TCCGGA | 1 cut(s) | 535 |
| BspFNI | CGCG | 3 cut(s) | 474, 1063, 1389 |
| BspLI | GGNNCC | 3 cut(s) | 458, 1414, 1614 |
| BspPI | GGATC | 3 cut(s) | 118, 597, 1253 |
| BsrDI | GCAATG | 1 cut(s) | 1443 |
| BsrI | ACTGG | 4 cut(s) | 73, 358, 423, 1416 |
| BssECI | CCNNGG | 5 cut(s) | 564, 599, 1205, 1262, 1387 |
| BssMI | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| Bst2UI | CCWGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| Bst4CI | ACNGT | 2 cut(s) | 788, 1157 |
| Bst6I | CTCTTC | 2 cut(s) | 357, 1695 |
| BstBAI | YACGTR | 1 cut(s) | 1653 |
| BstC8I | GCNNGC | 1 cut(s) | 1586 |
| BstDEI | CTNAG | 5 cut(s) | 24, 318, 954, 1109, 1532 |
| BstDSI | CCRYGG | 1 cut(s) | 1387 |
| BstEII | GGTNACC | 1 cut(s) | 1592 |
| BstF5I | GGATG | 5 cut(s) | 1225, 1315, 1324, 1459, 1750 |
| BstFNI | CGCG | 3 cut(s) | 474, 1063, 1389 |
| BstH2I | RGCGCY | 1 cut(s) | 544 |
| BstHHI | GCGC | 1 cut(s) | 543 |
| BstKTI | GATC | 9 cut(s) | 113, 142, 149, 169, 592, 1080, 1261, 1468, 1552 |
| BstMAI | GTCTC | 1 cut(s) | 159 |
| BstMBI | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 50, 471 |
| BstNI | CCWGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| BstPI | GGTNACC | 1 cut(s) | 1592 |
| BstSCI | CCNGG | 6 cut(s) | 430, 990, 1140, 1204, 1243, 1261 |
| BstSLI | GKGCMC | 3 cut(s) | 430, 658, 746 |
| BstUI | CGCG | 3 cut(s) | 474, 1063, 1389 |
| BstV1I | GCAGC | 4 cut(s) | 37, 447, 834, 871 |
| BstV2I | GAAGAC | 4 cut(s) | 386, 991, 1045, 1446 |
| BstX2I | RGATCY | 2 cut(s) | 146, 166 |
| BstYI | RGATCY | 2 cut(s) | 146, 166 |
| BsuI | GTATCC | 1 cut(s) | 319 |
| BtgI | CCRYGG | 1 cut(s) | 1387 |
| BtsCI | GGATG | 5 cut(s) | 1225, 1315, 1324, 1459, 1750 |
| BtsIMutI | CAGTG | 3 cut(s) | 351, 430, 1162 |
| BtuMI | TCGCGA | 2 cut(s) | 474, 1063 |
| Cac8I | GCNNGC | 1 cut(s) | 1586 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| CfoI | GCGC | 1 cut(s) | 543 |
| Cfr13I | GGNCC | 3 cut(s) | 456, 620, 1474 |
| Cfr42I | CCGCGG | 1 cut(s) | 1390 |
| CseI | GACGC | 2 cut(s) | 354, 1646 |
| CsiI | ACCWGGT | 2 cut(s) | 990, 1140 |
| Csp6I | GTAC | 2 cut(s) | 194, 526 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 234, 269 |
| CviAII | CATG | 9 cut(s) | 58, 453, 501, 506, 659, 937, 1190, 1488, 1598 |
| CviQI | GTAC | 2 cut(s) | 194, 526 |
| DdeI | CTNAG | 5 cut(s) | 24, 318, 954, 1109, 1532 |
| DpnI | GATC | 9 cut(s) | 112, 141, 148, 168, 591, 1079, 1260, 1467, 1551 |
| DpnII | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| DraI | TTTAAA | 1 cut(s) | 237 |
| Eam1104I | CTCTTC | 2 cut(s) | 357, 1695 |
| EarI | CTCTTC | 2 cut(s) | 357, 1695 |
| Ecl136II | GAGCTC | 1 cut(s) | 1121 |
| Eco24I | GRGCYC | 1 cut(s) | 1123 |
| Eco32I | GATATC | 1 cut(s) | 1250 |
| Eco47I | GGWCC | 3 cut(s) | 456, 620, 1474 |
| Eco53kI | GAGCTC | 1 cut(s) | 1121 |
| Eco57I | CTGAAG | 1 cut(s) | 309 |
| Eco91I | GGTNACC | 1 cut(s) | 1592 |
| EcoICRI | GAGCTC | 1 cut(s) | 1121 |
| EcoO65I | GGTNACC | 1 cut(s) | 1592 |
| EcoRII | CCWGG | 6 cut(s) | 430, 990, 1140, 1204, 1243, 1261 |
| EcoRV | GATATC | 1 cut(s) | 1250 |
| EcoT22I | ATGCAT | 1 cut(s) | 797 |
| EcoT38I | GRGCYC | 1 cut(s) | 1123 |
| Esp3I | CGTCTC | 1 cut(s) | 159 |
| FaeI | CATG | 9 cut(s) | 61, 456, 504, 509, 662, 940, 1193, 1491, 1601 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 354, 386, 1658, 1690 |
| FaqI | GGGAC | 6 cut(s) | 270, 916, 1049, 1404, 1591, 1649 |
| FatI | CATG | 9 cut(s) | 57, 452, 500, 505, 658, 936, 1189, 1487, 1597 |
| FauI | CCCGC | 1 cut(s) | 1382 |
| FblI | GTMKAC | 1 cut(s) | 1152 |
| Fnu4HI | GCNGC | 5 cut(s) | 51, 436, 823, 860, 1387 |
| FokI | GGATG | 5 cut(s) | 1232, 1322, 1331, 1466, 1757 |
| FriOI | GRGCYC | 1 cut(s) | 1123 |
| Fsp4HI | GCNGC | 5 cut(s) | 51, 436, 823, 860, 1387 |
| FspBI | CTAG | 6 cut(s) | 170, 272, 390, 923, 1581, 1589 |
| GlaI | GCGC | 1 cut(s) | 542 |
| GluI | GCNGC | 5 cut(s) | 51, 436, 823, 860, 1387 |
| GsaI | CCCAGC | 2 cut(s) | 465, 1644 |
| GsuI | CTGGAG | 3 cut(s) | 56, 321, 375 |
| HaeII | RGCGCY | 1 cut(s) | 544 |
| HapII | CCGG | 2 cut(s) | 536, 1010 |
| HgaI | GACGC | 2 cut(s) | 354, 1646 |
| HhaI | GCGC | 1 cut(s) | 543 |
| Hin1II | CATG | 9 cut(s) | 61, 456, 504, 509, 662, 940, 1193, 1491, 1601 |
| Hin6I | GCGC | 1 cut(s) | 541 |
| HinP1I | GCGC | 1 cut(s) | 541 |
| HincII | GTYRAC | 4 cut(s) | 709, 1237, 1402, 1672 |
| HindII | GTYRAC | 4 cut(s) | 709, 1237, 1402, 1672 |
| HindIII | AAGCTT | 1 cut(s) | 368 |
| HinfI | GANTC | 8 cut(s) | 287, 482, 710, 767, 1226, 1238, 1484, 1718 |
| HpaI | GTTAAC | 1 cut(s) | 1402 |
| HpaII | CCGG | 2 cut(s) | 536, 1010 |
| HphI | GGTGA | 8 cut(s) | 371, 389, 584, 800, 1205, 1222, 1298, 1604 |
| Hpy166II | GTNNAC | 7 cut(s) | 428, 656, 709, 1153, 1237, 1402, 1672 |
| Hpy188III | TCNNGA | 9 cut(s) | 103, 135, 209, 473, 536, 869, 1062, 1436, 1469 |
| Hpy8I | GTNNAC | 7 cut(s) | 428, 656, 709, 1153, 1237, 1402, 1672 |
| HpyCH4III | ACNGT | 2 cut(s) | 788, 1157 |
| HpyCH4IV | ACGT | 3 cut(s) | 202, 692, 1652 |
| HpyCH4V | TGCA | 7 cut(s) | 428, 656, 795, 822, 1294, 1491, 1689 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 50, 471 |
| HpyF3I | CTNAG | 5 cut(s) | 24, 318, 954, 1109, 1532 |
| HpySE526I | ACGT | 3 cut(s) | 202, 692, 1652 |
| Hsp92II | CATG | 9 cut(s) | 61, 456, 504, 509, 662, 940, 1193, 1491, 1601 |
| HspAI | GCGC | 1 cut(s) | 541 |
| Kpn2I | TCCGGA | 1 cut(s) | 535 |
| KspAI | GTTAAC | 1 cut(s) | 1402 |
| KspI | CCGCGG | 1 cut(s) | 1390 |
| Kzo9I | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| LmnI | GCTCC | 3 cut(s) | 538, 919, 1612 |
| Lsp1109I | GCAGC | 4 cut(s) | 37, 447, 834, 871 |
| LweI | GCATC | 5 cut(s) | 23, 637, 1022, 1373, 1612 |
| MabI | ACCWGGT | 2 cut(s) | 990, 1140 |
| MaeI | CTAG | 6 cut(s) | 170, 272, 390, 923, 1581, 1589 |
| MaeII | ACGT | 3 cut(s) | 202, 692, 1652 |
| MaeIII | GTNAC | 7 cut(s) | 932, 965, 1085, 1157, 1193, 1210, 1592 |
| MalI | GATC | 9 cut(s) | 112, 141, 148, 168, 591, 1079, 1260, 1467, 1551 |
| MboI | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| MflI | RGATCY | 2 cut(s) | 146, 166 |
| MhlI | GDGCHC | 5 cut(s) | 208, 430, 658, 746, 1123 |
| MluCI | AATT | 5 cut(s) | 91, 773, 980, 1027, 1393 |
| MlyI | GAGTC | 3 cut(s) | 704, 1220, 1232 |
| MmeI | TCCRAC | 3 cut(s) | 313, 781, 782 |
| Mph1103I | ATGCAT | 1 cut(s) | 797 |
| MroI | TCCGGA | 1 cut(s) | 535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1717 |
| MseI | TTAA | 6 cut(s) | 77, 186, 236, 417, 1365, 1401 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1602 |
| MspA1I | CMGCKG | 4 cut(s) | 825, 1049, 1389, 1531 |
| MspI | CCGG | 2 cut(s) | 536, 1010 |
| MspR9I | CCNGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| Mva1269I | GAATGC | 1 cut(s) | 797 |
| MvaI | CCWGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| MvnI | CGCG | 3 cut(s) | 474, 1063, 1389 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 50, 471 |
| NdeII | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| NlaIII | CATG | 9 cut(s) | 61, 456, 504, 509, 662, 940, 1193, 1491, 1601 |
| NlaIV | GGNNCC | 3 cut(s) | 458, 1414, 1614 |
| NmeAIII | GCCGAG | 1 cut(s) | 1102 |
| NmuCI | GTSAC | 6 cut(s) | 932, 965, 1157, 1193, 1210, 1592 |
| NruI | TCGCGA | 2 cut(s) | 474, 1063 |
| NsiI | ATGCAT | 1 cut(s) | 797 |
| PctI | GAATGC | 1 cut(s) | 797 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1717 |
| PfeI | GAWTC | 5 cut(s) | 287, 482, 767, 1484, 1718 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 506 |
| PfoI | TCCNGGA | 1 cut(s) | 1243 |
| PkrI | GCNGC | 5 cut(s) | 52, 437, 824, 861, 1388 |
| PleI | GAGTC | 3 cut(s) | 704, 1220, 1232 |
| PpsI | GAGTC | 3 cut(s) | 704, 1220, 1232 |
| Ppu21I | YACGTR | 1 cut(s) | 1653 |
| PshBI | ATTAAT | 2 cut(s) | 186, 417 |
| Psp124BI | GAGCTC | 1 cut(s) | 1123 |
| Psp6I | CCWGG | 6 cut(s) | 430, 990, 1140, 1204, 1243, 1261 |
| PspEI | GGTNACC | 1 cut(s) | 1592 |
| PspFI | CCCAGC | 2 cut(s) | 461, 1640 |
| PspGI | CCWGG | 6 cut(s) | 430, 990, 1140, 1204, 1243, 1261 |
| PspN4I | GGNNCC | 3 cut(s) | 458, 1414, 1614 |
| PspPI | GGNCC | 3 cut(s) | 456, 620, 1474 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 655, 687 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| PsuI | RGATCY | 2 cut(s) | 146, 166 |
| PvuII | CAGCTG | 2 cut(s) | 825, 1531 |
| RruI | TCGCGA | 2 cut(s) | 474, 1063 |
| RsaI | GTAC | 2 cut(s) | 195, 527 |
| RsaNI | GTAC | 2 cut(s) | 194, 526 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1602 |
| SacI | GAGCTC | 1 cut(s) | 1123 |
| SacII | CCGCGG | 1 cut(s) | 1390 |
| SaqAI | TTAA | 6 cut(s) | 77, 186, 236, 417, 1365, 1401 |
| SatI | GCNGC | 5 cut(s) | 51, 436, 823, 860, 1387 |
| Sau3AI | GATC | 9 cut(s) | 110, 139, 146, 166, 589, 1077, 1258, 1465, 1549 |
| Sau96I | GGNCC | 3 cut(s) | 456, 620, 1474 |
| ScaI | AGTACT | 1 cut(s) | 527 |
| SchI | GAGTC | 3 cut(s) | 704, 1220, 1232 |
| ScrFI | CCNGG | 6 cut(s) | 432, 992, 1142, 1206, 1245, 1263 |
| SduI | GDGCHC | 5 cut(s) | 208, 430, 658, 746, 1123 |
| SexAI | ACCWGGT | 2 cut(s) | 990, 1140 |
| SfaNI | GCATC | 5 cut(s) | 23, 637, 1022, 1373, 1612 |
| Sfr303I | CCGCGG | 1 cut(s) | 1390 |
| SgrBI | CCGCGG | 1 cut(s) | 1390 |
| SinI | GGWCC | 3 cut(s) | 456, 620, 1474 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1602 |
| SmlI | CTYRAG | 2 cut(s) | 719, 1756 |
| SmoI | CTYRAG | 2 cut(s) | 719, 1756 |
| Sse9I | AATT | 5 cut(s) | 91, 773, 980, 1027, 1393 |
| SsiI | CCGC | 5 cut(s) | 917, 1049, 1387, 1389, 1410 |
| SspI | AATATT | 1 cut(s) | 225 |
| SspMI | CTAG | 6 cut(s) | 170, 272, 390, 923, 1581, 1589 |
| SstI | GAGCTC | 1 cut(s) | 1123 |
| StyD4I | CCNGG | 6 cut(s) | 430, 990, 1140, 1204, 1243, 1261 |
| TaaI | ACNGT | 2 cut(s) | 788, 1157 |
| TaiI | ACGT | 3 cut(s) | 205, 695, 1655 |
| TaqI | TCGA | 1 cut(s) | 177 |
| TasI | AATT | 5 cut(s) | 91, 773, 980, 1027, 1393 |
| TatI | WGTACW | 1 cut(s) | 525 |
| TauI | GCSGC | 1 cut(s) | 1389 |
| TfiI | GAWTC | 5 cut(s) | 287, 482, 767, 1484, 1718 |
| Tru1I | TTAA | 6 cut(s) | 77, 186, 236, 417, 1365, 1401 |
| Tru9I | TTAA | 6 cut(s) | 77, 186, 236, 417, 1365, 1401 |
| TscAI | CASTG | 3 cut(s) | 358, 430, 1162 |
| TseFI | GTSAC | 6 cut(s) | 932, 965, 1157, 1193, 1210, 1592 |
| TseI | GCWGC | 4 cut(s) | 50, 435, 822, 859 |
| Tsp45I | GTSAC | 6 cut(s) | 932, 965, 1157, 1193, 1210, 1592 |
| TspDTI | ATGAA | 6 cut(s) | 1178, 1182, 1215, 1470, 1476, 1614 |
| TspGWI | ACGGA | 1 cut(s) | 832 |
| TspRI | CASTG | 3 cut(s) | 358, 430, 1162 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 506 |
| VneI | GTGCAC | 2 cut(s) | 426, 654 |
| VpaK11BI | GGWCC | 3 cut(s) | 456, 620, 1474 |
| VspI | ATTAAT | 2 cut(s) | 186, 417 |
| XapI | RAATTY | 3 cut(s) | 91, 1027, 1393 |
| XmiI | GTMKAC | 1 cut(s) | 1152 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1717 |
| XspI | CTAG | 6 cut(s) | 170, 272, 390, 923, 1581, 1589 |
| ZrmI | AGTACT | 1 cut(s) | 527 |
| Zsp2I | ATGCAT | 1 cut(s) | 797 |