Rh7CG053800
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
3902096 .. 3904032
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG053800.1

Sequence Viewer

Length: 1575 bp
ATGGTACAAAAACGTCCTCTTGATGACGAGCAAATATTTGTTTCTTTCAAGCACCCAAGACAAGTGGGACATAGTAAAGAGCTAGTTTCTTTTTCAGAATCTGTTTTTGCTGGAGATGTATCCAAGCTGCAGACTTCAGAGGATGGATTGGAAAGATGCAACACTGGAGGTGAAGAGAAGCTTTGTGGTGATGGCTTTACTAGTCTTCCGAAAGCTGGGGAGGACATTAATGCCAGTGCACCTGGCAGCTTTACTATTTCCTCATGGACCACCAGCACAACTCGCGAAGAAGATTCTTTTCCCCAAGCACCATGTCATGGATTTTATTTCCCAGAGTACTTCAATCCGGAGCGCCCAATAAGGACTTTAGCTTCCGAGGATATTTATTCTTTTCTTTTGGATCACCCTCCGAGGAAGTCGGCTTCCATTGGACCAGAGCATCAAGCTGTTATTCCACAATGGGGCGCACATGGAACTAATAATACTTCAAGTTATTTAGATACGTTTCAAGCAGTTGTTGACTCTGAAGTTGAGAACGATAAACGACTGATGGGCACTTGTGTTATTCCAATGCCTGATTCTGAATTATCAACTAACGGTGAATGCGTAGTTGGAAATGGTAGAACTGATTGCAGCTGTGAAGATAAGGCTTCCGTCAGATGTGTCAGGCAGCACATTCTGGAAGCAAGAGAGAAACTTATAAAGGACATTGGGACAGAGAGATTTGCAGAGCTAGGATTTTGTGACATGGGAGAGCAAGTGGCTGAGAAATGGAGTGACGAGGAGGAAAAATTATTCCACCAGGTTGTCTTCTCAAATCCAGCATCATCGGACAAGAATTTCTGGGACAATCTTTCAGCGGTCTTGTCCTCGCGAACAAAAAAGGAGATCGTCAGTTACTATTTCAATGTCTTTATGTTGAGGAAAAGAGCTCGGCAGAACAGATATGACCCGGTAAACGTAGACAGTGATAATGATGAATGGGAGGGGAGTAATGTTCATGGTGACAATGAACCTGGGGTGACAGAGGATGATGACTCGGTTGTTGACTCTCCTGGATATCAAAATGATCTTGGGTATAACAGAAGTTGGGGTGGTGATATGCAAGAGTGTGATGAGGATGTTGTGGATGATACTTGTGATAATGTAAATGTAGATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCAGGGAATCTGGTTAACAATGGCGGTTCCAGTCCCATAATTCAGTTTCAGAAAGACATTGCTTGGGATGAAAAGGGAGATCAGGAGGTCCAAGACGATTCATGCACTTCTTTTGAGGCAGGGGCTAGCTCCCAAGATAATCAGCTGAGGTCTGAAAATGGAGATCATTGGGAAGTTGGTTGTTTCAATGGGACTAGCAAGCTAGGTGACCATGAATATGTTTTGGAGCCTTGTGATGCTAAAGTTTGGGATGCTGGGTATTCTACGTGCCGAAAAAATAAGGTTGACTTTTTGCCAACTTGCAATATGATTGAAGAGGTTTTTGGAAAAGATTCTTGGAATAACTACAAAGCAAGGGATGGTAAGAACTTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

524

Amino Acids

58.49

Weight (kDa)

4.5

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AccB7I CCANNNNNTGG 1 cut(s) 317
AccI GTMKAC 1 cut(s) 963
AccII CGCG 2 cut(s) 285, 874
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 2 cut(s) 860, 1221
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 838
AcuI CTGAAG 2 cut(s) 120, 546
AfaI GTAC 2 cut(s) 6, 338
AfiI CCNNNNNNNGG 3 cut(s) 215, 317, 461
AgsI TTSAA 7 cut(s) 49, 343, 489, 509, 907, 1384, 1511
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 5 cut(s) 241, 801, 1015, 1054, 1198
AjuI GAANNNNNNNTTGG 8 cut(s) 562, 594, 594, 626, 1503, 1516, 1535, 1548
Alw21I GWGCWC 2 cut(s) 241, 934
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 346
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 4 cut(s) 127, 246, 633, 670
ApoI RAATTY 1 cut(s) 838
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 1528
AspLEI GCGC 2 cut(s) 354, 467
AspS9I GGNCC 3 cut(s) 267, 431, 1285
AsuC2I CCSGG 1 cut(s) 953
AsuHPI GGTGA 8 cut(s) 182, 200, 395, 611, 1016, 1033, 1109, 1415
AsuNHI GCTAGC 1 cut(s) 1322
AvaII GGWCC 3 cut(s) 267, 431, 1285
BaeGI GKGCMC 2 cut(s) 241, 557
BanII GRGCYC 1 cut(s) 934
BbsI GAAGAC 2 cut(s) 197, 802
Bbv12I GWGCWC 2 cut(s) 241, 934
BbvCI CCTCAGC 1 cut(s) 1343
BbvI GCAGC 4 cut(s) 114, 258, 645, 682
BccI CCATC 4 cut(s) 137, 185, 544, 1550
BciT130I CCWGG 5 cut(s) 243, 803, 1017, 1056, 1200
BciVI GTATCC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 953
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 6 cut(s) 83, 201, 734, 1323, 1392, 1400
BfmI CTRYAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 355
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 4 cut(s) 128, 247, 634, 671
BlsI GCNGC 4 cut(s) 129, 248, 635, 672
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 6 cut(s) 243, 803, 953, 1017, 1056, 1200
Bme18I GGWCC 3 cut(s) 267, 431, 1285
BmgT120I GGNCC 3 cut(s) 267, 431, 1285
BmiI GGNNCC 2 cut(s) 1225, 1425
BmrFI CCNGG 6 cut(s) 243, 803, 953, 1017, 1056, 1200
BmsI GCATC 6 cut(s) 146, 448, 833, 1184, 1423, 1438
BmtI GCTAGC 1 cut(s) 1326
BpiI GAAGAC 2 cut(s) 197, 802
BpmI CTGGAG 2 cut(s) 132, 186
Bpu10I CCTNAGC 1 cut(s) 1343
BpuMI CCSGG 1 cut(s) 953
BsaAI YACGTR 1 cut(s) 1464
BsaJI CCNNGG 5 cut(s) 375, 410, 1016, 1198, 1199
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 317, 461
Bse1I ACTGG 3 cut(s) 169, 234, 1227
Bse3DI GCAATG 1 cut(s) 1254
BseAI TCCGGA 1 cut(s) 346
BseBI CCWGG 5 cut(s) 243, 803, 1017, 1056, 1200
BseDI CCNNGG 5 cut(s) 375, 410, 1016, 1198, 1199
BseGI GGATG 7 cut(s) 148, 1036, 1126, 1135, 1270, 1453, 1561
BseLI CCNNNNNNNGG 3 cut(s) 215, 317, 461
BseMI GCAATG 1 cut(s) 1254
BseMII CTCAG 2 cut(s) 756, 1334
BseNI ACTGG 3 cut(s) 169, 234, 1227
BseRI GAGGAG 1 cut(s) 797
BseSI GKGCMC 2 cut(s) 241, 557
BseXI GCAGC 4 cut(s) 114, 258, 645, 682
BseYI CCCAGC 2 cut(s) 215, 1451
Bsh1236I CGCG 2 cut(s) 285, 874
BsiHKAI GWGCWC 2 cut(s) 241, 934
BsiSI CCGG 2 cut(s) 347, 953
BslFI GGGAC 5 cut(s) 81, 727, 860, 1215, 1402
BslI CCNNNNNNNGG 3 cut(s) 215, 317, 461
BsmFI GGGAC 5 cut(s) 81, 727, 860, 1215, 1402
BsmI GAATGC 1 cut(s) 608
Bsp1286I GDGCHC 3 cut(s) 241, 557, 934
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 5 cut(s) 400, 888, 1069, 1276, 1360
Bsp68I TCGCGA 2 cut(s) 285, 874
BspACI CCGC 2 cut(s) 860, 1221
BspCNI CTCAG 2 cut(s) 757, 1335
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 2 cut(s) 285, 874
BspLI GGNNCC 2 cut(s) 1225, 1425
BspMAI CTGCAG 1 cut(s) 132
BspOI GCTAGC 1 cut(s) 1326
BspPI GGATC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 1254
BsrI ACTGG 3 cut(s) 169, 234, 1227
BssECI CCNNGG 5 cut(s) 375, 410, 1016, 1198, 1199
BssMI GATC 5 cut(s) 400, 888, 1069, 1276, 1360
Bst2UI CCWGG 5 cut(s) 243, 803, 1017, 1056, 1200
Bst4CI ACNGT 2 cut(s) 599, 968
Bst6I CTCTTC 2 cut(s) 168, 1506
BstBAI YACGTR 1 cut(s) 1464
BstC8I GCNNGC 2 cut(s) 1324, 1397
BstDEI CTNAG 2 cut(s) 765, 1343
BstEII GGTNACC 1 cut(s) 1403
BstF5I GGATG 7 cut(s) 148, 1036, 1126, 1135, 1270, 1453, 1561
BstFNI CGCG 2 cut(s) 285, 874
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 354, 467
BstKTI GATC 5 cut(s) 403, 891, 1072, 1279, 1363
BstMBI GATC 5 cut(s) 400, 888, 1069, 1276, 1360
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 5 cut(s) 243, 803, 1017, 1056, 1200
BstPI GGTNACC 1 cut(s) 1403
BstSCI CCNGG 6 cut(s) 241, 801, 951, 1015, 1054, 1198
BstSFI CTRYAG 1 cut(s) 128
BstSLI GKGCMC 2 cut(s) 241, 557
BstUI CGCG 2 cut(s) 285, 874
BstV1I GCAGC 4 cut(s) 114, 258, 645, 682
BstV2I GAAGAC 2 cut(s) 197, 802
BsuI GTATCC 1 cut(s) 130
BtsCI GGATG 7 cut(s) 148, 1036, 1126, 1135, 1270, 1453, 1561
BtsIMutI CAGTG 3 cut(s) 162, 241, 973
BtuMI TCGCGA 2 cut(s) 285, 874
Cac8I GCNNGC 2 cut(s) 1324, 1397
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 2 cut(s) 354, 467
Cfr13I GGNCC 3 cut(s) 267, 431, 1285
CsiI ACCWGGT 1 cut(s) 801
Csp6I GTAC 2 cut(s) 5, 337
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 8 cut(s) 264, 312, 317, 470, 748, 1001, 1299, 1409
CviQI GTAC 2 cut(s) 5, 337
DdeI CTNAG 2 cut(s) 765, 1343
DpnI GATC 5 cut(s) 402, 890, 1071, 1278, 1362
DpnII GATC 5 cut(s) 400, 888, 1069, 1276, 1360
Eam1104I CTCTTC 2 cut(s) 168, 1506
EarI CTCTTC 2 cut(s) 168, 1506
Ecl136II GAGCTC 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 934
Eco32I GATATC 1 cut(s) 1061
Eco47I GGWCC 3 cut(s) 267, 431, 1285
Eco53kI GAGCTC 1 cut(s) 932
Eco57I CTGAAG 2 cut(s) 120, 546
Eco91I GGTNACC 1 cut(s) 1403
EcoICRI GAGCTC 1 cut(s) 932
EcoO65I GGTNACC 1 cut(s) 1403
EcoRII CCWGG 5 cut(s) 241, 801, 1015, 1054, 1198
EcoRV GATATC 1 cut(s) 1061
EcoT38I GRGCYC 1 cut(s) 934
FaeI CATG 8 cut(s) 267, 315, 320, 473, 751, 1004, 1302, 1412
FalI AAGNNNNNCTT 4 cut(s) 165, 197, 1469, 1501
FaqI GGGAC 5 cut(s) 81, 727, 860, 1215, 1402
FatI CATG 8 cut(s) 263, 311, 316, 469, 747, 1000, 1298, 1408
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 4 cut(s) 128, 247, 634, 671
FokI GGATG 7 cut(s) 155, 1043, 1133, 1142, 1277, 1460, 1568
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 4 cut(s) 128, 247, 634, 671
FspBI CTAG 6 cut(s) 83, 201, 734, 1323, 1392, 1400
GlaI GCGC 2 cut(s) 353, 466
GluI GCNGC 4 cut(s) 128, 247, 634, 671
GsaI CCCAGC 2 cut(s) 219, 1455
GsuI CTGGAG 2 cut(s) 132, 186
HaeII RGCGCY 1 cut(s) 355
HapII CCGG 2 cut(s) 347, 953
HhaI GCGC 2 cut(s) 354, 467
Hin1II CATG 8 cut(s) 267, 315, 320, 473, 751, 1004, 1302, 1412
Hin6I GCGC 2 cut(s) 352, 465
HinP1I GCGC 2 cut(s) 352, 465
HincII GTYRAC 4 cut(s) 520, 1048, 1213, 1483
HindII GTYRAC 4 cut(s) 520, 1048, 1213, 1483
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 9 cut(s) 98, 293, 521, 578, 1037, 1049, 1204, 1295, 1529
HpaI GTTAAC 1 cut(s) 1213
HpaII CCGG 2 cut(s) 347, 953
HphI GGTGA 8 cut(s) 182, 200, 395, 611, 1016, 1033, 1109, 1415
Hpy166II GTNNAC 7 cut(s) 239, 520, 958, 964, 1048, 1213, 1483
Hpy188III TCNNGA 6 cut(s) 20, 284, 347, 680, 873, 1280
Hpy8I GTNNAC 7 cut(s) 239, 520, 958, 964, 1048, 1213, 1483
HpyCH4III ACNGT 2 cut(s) 599, 968
HpyCH4IV ACGT 4 cut(s) 13, 503, 960, 1463
HpyCH4V TGCA 8 cut(s) 130, 159, 239, 633, 728, 1105, 1302, 1500
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 2 cut(s) 765, 1343
HpySE526I ACGT 4 cut(s) 13, 503, 960, 1463
Hsp92II CATG 8 cut(s) 267, 315, 320, 473, 751, 1004, 1302, 1412
HspAI GCGC 2 cut(s) 352, 465
Kpn2I TCCGGA 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 1213
Kzo9I GATC 5 cut(s) 400, 888, 1069, 1276, 1360
LmnI GCTCC 3 cut(s) 349, 1331, 1423
Lsp1109I GCAGC 4 cut(s) 114, 258, 645, 682
LweI GCATC 6 cut(s) 146, 448, 833, 1184, 1423, 1438
MabI ACCWGGT 1 cut(s) 801
MaeI CTAG 6 cut(s) 83, 201, 734, 1323, 1392, 1400
MaeII ACGT 4 cut(s) 13, 503, 960, 1463
MaeIII GTNAC 6 cut(s) 743, 776, 896, 1004, 1021, 1403
MalI GATC 5 cut(s) 402, 890, 1071, 1278, 1362
MboI GATC 5 cut(s) 400, 888, 1069, 1276, 1360
MboII GAAGA 7 cut(s) 185, 197, 299, 302, 653, 802, 1523
MhlI GDGCHC 3 cut(s) 241, 557, 934
MluCI AATT 4 cut(s) 584, 791, 838, 1236
MlyI GAGTC 3 cut(s) 515, 1031, 1043
MmeI TCCRAC 1 cut(s) 592
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 1528
MseI TTAA 3 cut(s) 228, 1176, 1212
MslI CAYNNNNRTG 1 cut(s) 1413
MspA1I CMGCKG 3 cut(s) 636, 860, 1342
MspI CCGG 2 cut(s) 347, 953
MspR9I CCNGG 6 cut(s) 243, 803, 953, 1017, 1056, 1200
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 5 cut(s) 243, 803, 1017, 1056, 1200
MvnI CGCG 2 cut(s) 285, 874
MwoI GCNNNNNNNGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 953
NdeII GATC 5 cut(s) 400, 888, 1069, 1276, 1360
NheI GCTAGC 1 cut(s) 1322
NlaIII CATG 8 cut(s) 267, 315, 320, 473, 751, 1004, 1302, 1412
NlaIV GGNNCC 2 cut(s) 1225, 1425
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 5 cut(s) 743, 776, 1004, 1021, 1403
NruI TCGCGA 2 cut(s) 285, 874
PasI CCCWGGG 1 cut(s) 1199
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 1528
PfeI GAWTC 6 cut(s) 98, 293, 578, 1204, 1295, 1529
PflMI CCANNNNNTGG 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 1054
PkrI GCNGC 4 cut(s) 129, 248, 635, 672
PleI GAGTC 3 cut(s) 515, 1031, 1043
PpsI GAGTC 3 cut(s) 515, 1031, 1043
Ppu21I YACGTR 1 cut(s) 1464
PshBI ATTAAT 1 cut(s) 228
PsiI TTATAA 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 934
Psp6I CCWGG 5 cut(s) 241, 801, 1015, 1054, 1198
PspEI GGTNACC 1 cut(s) 1403
PspFI CCCAGC 2 cut(s) 215, 1451
PspGI CCWGG 5 cut(s) 241, 801, 1015, 1054, 1198
PspN4I GGNNCC 2 cut(s) 1225, 1425
PspPI GGNCC 3 cut(s) 267, 431, 1285
PsrI GAACNNNNNNTAC 2 cut(s) 466, 498
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 101
PvuII CAGCTG 2 cut(s) 636, 1342
RruI TCGCGA 2 cut(s) 285, 874
RsaI GTAC 2 cut(s) 6, 338
RsaNI GTAC 2 cut(s) 5, 337
RseI CAYNNNNRTG 1 cut(s) 1413
SacI GAGCTC 1 cut(s) 934
SaqAI TTAA 3 cut(s) 228, 1176, 1212
SatI GCNGC 4 cut(s) 128, 247, 634, 671
Sau3AI GATC 5 cut(s) 400, 888, 1069, 1276, 1360
Sau96I GGNCC 3 cut(s) 267, 431, 1285
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 3 cut(s) 515, 1031, 1043
ScrFI CCNGG 6 cut(s) 243, 803, 953, 1017, 1056, 1200
SduI GDGCHC 3 cut(s) 241, 557, 934
SexAI ACCWGGT 1 cut(s) 801
SfaNI GCATC 6 cut(s) 146, 448, 833, 1184, 1423, 1438
SfcI CTRYAG 1 cut(s) 128
SinI GGWCC 3 cut(s) 267, 431, 1285
SmiMI CAYNNNNRTG 1 cut(s) 1413
SmlI CTYRAG 1 cut(s) 1567
SmoI CTYRAG 1 cut(s) 1567
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 4 cut(s) 584, 791, 838, 1236
SsiI CCGC 2 cut(s) 860, 1221
SspI AATATT 1 cut(s) 36
SspMI CTAG 6 cut(s) 83, 201, 734, 1323, 1392, 1400
SstI GAGCTC 1 cut(s) 934
StyD4I CCNGG 6 cut(s) 241, 801, 951, 1015, 1054, 1198
TaaI ACNGT 2 cut(s) 599, 968
TaiI ACGT 4 cut(s) 16, 506, 963, 1466
TasI AATT 4 cut(s) 584, 791, 838, 1236
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 6 cut(s) 98, 293, 578, 1204, 1295, 1529
Tru1I TTAA 3 cut(s) 228, 1176, 1212
Tru9I TTAA 3 cut(s) 228, 1176, 1212
TscAI CASTG 3 cut(s) 169, 241, 973
TseFI GTSAC 5 cut(s) 743, 776, 1004, 1021, 1403
TseI GCWGC 4 cut(s) 127, 246, 633, 670
Tsp45I GTSAC 5 cut(s) 743, 776, 1004, 1021, 1403
TspDTI ATGAA 6 cut(s) 989, 993, 1026, 1281, 1287, 1425
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 3 cut(s) 169, 241, 973
Van91I CCANNNNNTGG 1 cut(s) 317
VneI GTGCAC 1 cut(s) 237
VpaK11BI GGWCC 3 cut(s) 267, 431, 1285
VspI ATTAAT 1 cut(s) 228
XapI RAATTY 1 cut(s) 838
XmiI GTMKAC 1 cut(s) 963
XmnI GAANNNNTTC 1 cut(s) 1528
XspI CTAG 6 cut(s) 83, 201, 734, 1323, 1392, 1400
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.