SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g14260 FvH4_5g14260 |
| malus_domestica | MD14G1209100.v1.1 |
| prunus_persica | Prupe.5G201500_v2.0.a1 Prupe.5G201500_v2.0.a1 |
| pyrus_communis | pycom14g17290 |
| rosa_chinensis | RchiOBHm_Chr7g0182651 |
| rosa_laevigata | RLG00000005111 |
| rosa_multiflora | Rmu_co8265785.1_g000001 Rmu_sc0004168.1_g000068 Rmu_sc0008579.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00271090 |
| rosa_rugosa | Rorug06G0448800 |
| rosa_samantha | Rh7AG052700 Rh7BG052300 Rh7CG053800 Rh7DG052100 |
| rosa_wichuraiana | Rw7G004290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 812 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 326, 428 |
| AccI | GTMKAC | 1 cut(s) | 1074 |
| AccII | CGCG | 2 cut(s) | 396, 985 |
| AccIII | TCCGGA | 1 cut(s) | 457 |
| AciI | CCGC | 4 cut(s) | 239, 839, 971, 1332 |
| AclWI | GGATC | 1 cut(s) | 519 |
| AcsI | RAATTY | 1 cut(s) | 949 |
| AcuI | CTGAAG | 2 cut(s) | 231, 657 |
| AfaI | GTAC | 2 cut(s) | 117, 449 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 326, 428, 572 |
| AgsI | TTSAA | 8 cut(s) | 34, 160, 454, 600, 620, 1018, 1495, 1622 |
| AjnI | CCWGG | 5 cut(s) | 14, 352, 912, 1126, 1165 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 673, 705, 705, 737, 1614, 1627, 1646, 1659 |
| Alw21I | GWGCWC | 2 cut(s) | 352, 1045 |
| Alw44I | GTGCAC | 1 cut(s) | 348 |
| AlwI | GGATC | 1 cut(s) | 519 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 212 |
| Ama87I | CYCGRG | 1 cut(s) | 1310 |
| Aor13HI | TCCGGA | 1 cut(s) | 457 |
| ApaLI | GTGCAC | 1 cut(s) | 348 |
| ApeKI | GCWGC | 3 cut(s) | 357, 744, 781 |
| ApoI | RAATTY | 1 cut(s) | 949 |
| AseI | ATTAAT | 2 cut(s) | 108, 339 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1639 |
| AspLEI | GCGC | 2 cut(s) | 465, 578 |
| AspS9I | GGNCC | 3 cut(s) | 378, 542, 1396 |
| AsuC2I | CCSGG | 3 cut(s) | 1064, 1311, 1312 |
| AsuHPI | GGTGA | 7 cut(s) | 293, 311, 506, 722, 1127, 1144, 1526 |
| AsuNHI | GCTAGC | 1 cut(s) | 1433 |
| AvaI | CYCGRG | 1 cut(s) | 1310 |
| AvaII | GGWCC | 3 cut(s) | 378, 542, 1396 |
| BaeGI | GKGCMC | 1 cut(s) | 352 |
| BanII | GRGCYC | 1 cut(s) | 1045 |
| BbsI | GAAGAC | 3 cut(s) | 308, 913, 967 |
| Bbv12I | GWGCWC | 2 cut(s) | 352, 1045 |
| BbvCI | CCTCAGC | 1 cut(s) | 1454 |
| BbvI | GCAGC | 3 cut(s) | 369, 756, 793 |
| BccI | CCATC | 4 cut(s) | 19, 248, 655, 1661 |
| BciT130I | CCWGG | 5 cut(s) | 16, 354, 914, 1128, 1167 |
| BciVI | GTATCC | 1 cut(s) | 241 |
| BcnI | CCSGG | 3 cut(s) | 1064, 1311, 1312 |
| BfaI | CTAG | 6 cut(s) | 194, 312, 845, 1434, 1503, 1511 |
| BfmI | CTRYAG | 1 cut(s) | 101 |
| BfoI | RGCGCY | 1 cut(s) | 466 |
| BfuI | GTATCC | 1 cut(s) | 241 |
| BisI | GCNGC | 4 cut(s) | 239, 358, 745, 782 |
| BlsI | GCNGC | 4 cut(s) | 240, 359, 746, 783 |
| BmcAI | AGTACT | 1 cut(s) | 449 |
| Bme1390I | CCNGG | 8 cut(s) | 16, 354, 914, 1064, 1128, 1167, 1311, 1312 |
| Bme18I | GGWCC | 3 cut(s) | 378, 542, 1396 |
| BmeT110I | CYCGRG | 1 cut(s) | 1310 |
| BmgT120I | GGNCC | 3 cut(s) | 378, 542, 1396 |
| BmiI | GGNNCC | 1 cut(s) | 1336 |
| BmrFI | CCNGG | 8 cut(s) | 16, 354, 914, 1064, 1128, 1167, 1311, 1312 |
| BmsI | GCATC | 5 cut(s) | 257, 559, 944, 1295, 1534 |
| BmtI | GCTAGC | 1 cut(s) | 1437 |
| BpiI | GAAGAC | 3 cut(s) | 308, 913, 967 |
| BpmI | CTGGAG | 2 cut(s) | 243, 297 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1454 |
| BpuMI | CCSGG | 3 cut(s) | 1064, 1311, 1312 |
| BsaAI | YACGTR | 1 cut(s) | 1575 |
| BsaJI | CCNNGG | 5 cut(s) | 486, 521, 1127, 1309, 1310 |
| BsaWI | WCCGGW | 1 cut(s) | 457 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 855, 885 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 326, 428, 572 |
| Bse1I | ACTGG | 3 cut(s) | 280, 345, 1338 |
| Bse3DI | GCAATG | 1 cut(s) | 1365 |
| BseAI | TCCGGA | 1 cut(s) | 457 |
| BseBI | CCWGG | 5 cut(s) | 16, 354, 914, 1128, 1167 |
| BseDI | CCNNGG | 5 cut(s) | 486, 521, 1127, 1309, 1310 |
| BseGI | GGATG | 5 cut(s) | 259, 1237, 1246, 1381, 1672 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 326, 428, 572 |
| BseMI | GCAATG | 1 cut(s) | 1365 |
| BseMII | CTCAG | 2 cut(s) | 867, 1445 |
| BseNI | ACTGG | 3 cut(s) | 280, 345, 1338 |
| BseRI | GAGGAG | 1 cut(s) | 908 |
| BseSI | GKGCMC | 1 cut(s) | 352 |
| BseXI | GCAGC | 3 cut(s) | 369, 756, 793 |
| BseYI | CCCAGC | 2 cut(s) | 326, 1562 |
| Bsh1236I | CGCG | 2 cut(s) | 396, 985 |
| BsiHKAI | GWGCWC | 2 cut(s) | 352, 1045 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1310 |
| BsiSI | CCGG | 3 cut(s) | 458, 1064, 1311 |
| BslFI | GGGAC | 6 cut(s) | 192, 838, 971, 1326, 1513, 1571 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 326, 428, 572 |
| BsmFI | GGGAC | 6 cut(s) | 192, 838, 971, 1326, 1513, 1571 |
| BsmI | GAATGC | 1 cut(s) | 719 |
| BsoBI | CYCGRG | 1 cut(s) | 1310 |
| Bsp1286I | GDGCHC | 2 cut(s) | 352, 1045 |
| Bsp13I | TCCGGA | 1 cut(s) | 457 |
| Bsp143I | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| Bsp68I | TCGCGA | 2 cut(s) | 396, 985 |
| BspACI | CCGC | 4 cut(s) | 239, 839, 971, 1332 |
| BspCNI | CTCAG | 2 cut(s) | 868, 1446 |
| BspEI | TCCGGA | 1 cut(s) | 457 |
| BspFNI | CGCG | 2 cut(s) | 396, 985 |
| BspLI | GGNNCC | 1 cut(s) | 1336 |
| BspMAI | CTGCAG | 1 cut(s) | 105 |
| BspOI | GCTAGC | 1 cut(s) | 1437 |
| BspPI | GGATC | 1 cut(s) | 519 |
| BsrDI | GCAATG | 1 cut(s) | 1365 |
| BsrI | ACTGG | 3 cut(s) | 280, 345, 1338 |
| BssECI | CCNNGG | 5 cut(s) | 486, 521, 1127, 1309, 1310 |
| BssMI | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| Bst2UI | CCWGG | 5 cut(s) | 16, 354, 914, 1128, 1167 |
| Bst4CI | ACNGT | 2 cut(s) | 710, 1079 |
| Bst6I | CTCTTC | 2 cut(s) | 279, 1617 |
| BstBAI | YACGTR | 1 cut(s) | 1575 |
| BstC8I | GCNNGC | 2 cut(s) | 1435, 1508 |
| BstDEI | CTNAG | 2 cut(s) | 876, 1454 |
| BstEII | GGTNACC | 1 cut(s) | 1514 |
| BstF5I | GGATG | 5 cut(s) | 259, 1237, 1246, 1381, 1672 |
| BstFNI | CGCG | 2 cut(s) | 396, 985 |
| BstH2I | RGCGCY | 1 cut(s) | 466 |
| BstHHI | GCGC | 2 cut(s) | 465, 578 |
| BstKTI | GATC | 5 cut(s) | 514, 1002, 1183, 1390, 1474 |
| BstMBI | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 393 |
| BstNI | CCWGG | 5 cut(s) | 16, 354, 914, 1128, 1167 |
| BstPI | GGTNACC | 1 cut(s) | 1514 |
| BstSCI | CCNGG | 8 cut(s) | 14, 352, 912, 1062, 1126, 1165, 1309, 1310 |
| BstSFI | CTRYAG | 1 cut(s) | 101 |
| BstSLI | GKGCMC | 1 cut(s) | 352 |
| BstUI | CGCG | 2 cut(s) | 396, 985 |
| BstV1I | GCAGC | 3 cut(s) | 369, 756, 793 |
| BstV2I | GAAGAC | 3 cut(s) | 308, 913, 967 |
| BsuI | GTATCC | 1 cut(s) | 241 |
| BtsCI | GGATG | 5 cut(s) | 259, 1237, 1246, 1381, 1672 |
| BtsIMutI | CAGTG | 3 cut(s) | 273, 352, 1084 |
| BtuMI | TCGCGA | 2 cut(s) | 396, 985 |
| Cac8I | GCNNGC | 2 cut(s) | 1435, 1508 |
| CaiI | CAGNNNCTG | 1 cut(s) | 212 |
| CfoI | GCGC | 2 cut(s) | 465, 578 |
| Cfr13I | GGNCC | 3 cut(s) | 378, 542, 1396 |
| Cfr9I | CCCGGG | 1 cut(s) | 1310 |
| CseI | GACGC | 1 cut(s) | 1568 |
| CsiI | ACCWGGT | 1 cut(s) | 912 |
| Csp6I | GTAC | 2 cut(s) | 116, 448 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 156, 191 |
| CviAII | CATG | 8 cut(s) | 375, 423, 428, 581, 859, 1112, 1410, 1520 |
| CviQI | GTAC | 2 cut(s) | 116, 448 |
| DdeI | CTNAG | 2 cut(s) | 876, 1454 |
| DpnI | GATC | 5 cut(s) | 513, 1001, 1182, 1389, 1473 |
| DpnII | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| Eam1104I | CTCTTC | 2 cut(s) | 279, 1617 |
| EarI | CTCTTC | 2 cut(s) | 279, 1617 |
| Ecl136II | GAGCTC | 1 cut(s) | 1043 |
| Eco24I | GRGCYC | 1 cut(s) | 1045 |
| Eco32I | GATATC | 1 cut(s) | 1172 |
| Eco47I | GGWCC | 3 cut(s) | 378, 542, 1396 |
| Eco53kI | GAGCTC | 1 cut(s) | 1043 |
| Eco57I | CTGAAG | 2 cut(s) | 231, 657 |
| Eco88I | CYCGRG | 1 cut(s) | 1310 |
| Eco91I | GGTNACC | 1 cut(s) | 1514 |
| EcoICRI | GAGCTC | 1 cut(s) | 1043 |
| EcoO65I | GGTNACC | 1 cut(s) | 1514 |
| EcoRII | CCWGG | 5 cut(s) | 14, 352, 912, 1126, 1165 |
| EcoRV | GATATC | 1 cut(s) | 1172 |
| EcoT38I | GRGCYC | 1 cut(s) | 1045 |
| FaeI | CATG | 8 cut(s) | 378, 426, 431, 584, 862, 1115, 1413, 1523 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 276, 308, 1580, 1612 |
| FaqI | GGGAC | 6 cut(s) | 192, 838, 971, 1326, 1513, 1571 |
| FatI | CATG | 8 cut(s) | 374, 422, 427, 580, 858, 1111, 1409, 1519 |
| FblI | GTMKAC | 1 cut(s) | 1074 |
| Fnu4HI | GCNGC | 4 cut(s) | 239, 358, 745, 782 |
| FokI | GGATG | 5 cut(s) | 266, 1244, 1253, 1388, 1679 |
| FriOI | GRGCYC | 1 cut(s) | 1045 |
| Fsp4HI | GCNGC | 4 cut(s) | 239, 358, 745, 782 |
| FspBI | CTAG | 6 cut(s) | 194, 312, 845, 1434, 1503, 1511 |
| GlaI | GCGC | 2 cut(s) | 464, 577 |
| GluI | GCNGC | 4 cut(s) | 239, 358, 745, 782 |
| GsaI | CCCAGC | 2 cut(s) | 330, 1566 |
| GsuI | CTGGAG | 2 cut(s) | 243, 297 |
| HaeII | RGCGCY | 1 cut(s) | 466 |
| HapII | CCGG | 3 cut(s) | 458, 1064, 1311 |
| HgaI | GACGC | 1 cut(s) | 1568 |
| HhaI | GCGC | 2 cut(s) | 465, 578 |
| Hin1II | CATG | 8 cut(s) | 378, 426, 431, 584, 862, 1115, 1413, 1523 |
| Hin6I | GCGC | 2 cut(s) | 463, 576 |
| HinP1I | GCGC | 2 cut(s) | 463, 576 |
| HincII | GTYRAC | 4 cut(s) | 631, 1159, 1324, 1594 |
| HindII | GTYRAC | 4 cut(s) | 631, 1159, 1324, 1594 |
| HindIII | AAGCTT | 1 cut(s) | 290 |
| HpaI | GTTAAC | 1 cut(s) | 1324 |
| HpaII | CCGG | 3 cut(s) | 458, 1064, 1311 |
| HphI | GGTGA | 7 cut(s) | 293, 311, 506, 722, 1127, 1144, 1526 |
| Hpy166II | GTNNAC | 7 cut(s) | 350, 631, 1069, 1075, 1159, 1324, 1594 |
| Hpy188III | TCNNGA | 6 cut(s) | 131, 395, 458, 791, 984, 1391 |
| Hpy8I | GTNNAC | 7 cut(s) | 350, 631, 1069, 1075, 1159, 1324, 1594 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyCH4III | ACNGT | 2 cut(s) | 710, 1079 |
| HpyCH4IV | ACGT | 4 cut(s) | 124, 614, 1071, 1574 |
| HpyCH4V | TGCA | 7 cut(s) | 103, 270, 350, 744, 1216, 1413, 1611 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 393 |
| HpyF3I | CTNAG | 2 cut(s) | 876, 1454 |
| HpySE526I | ACGT | 4 cut(s) | 124, 614, 1071, 1574 |
| Hsp92II | CATG | 8 cut(s) | 378, 426, 431, 584, 862, 1115, 1413, 1523 |
| HspAI | GCGC | 2 cut(s) | 463, 576 |
| Kpn2I | TCCGGA | 1 cut(s) | 457 |
| KspAI | GTTAAC | 1 cut(s) | 1324 |
| Kzo9I | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| LmnI | GCTCC | 3 cut(s) | 460, 841, 1442 |
| Lsp1109I | GCAGC | 3 cut(s) | 369, 756, 793 |
| LweI | GCATC | 5 cut(s) | 257, 559, 944, 1295, 1534 |
| MabI | ACCWGGT | 1 cut(s) | 912 |
| MaeI | CTAG | 6 cut(s) | 194, 312, 845, 1434, 1503, 1511 |
| MaeII | ACGT | 4 cut(s) | 124, 614, 1071, 1574 |
| MaeIII | GTNAC | 6 cut(s) | 854, 887, 1007, 1115, 1132, 1514 |
| MalI | GATC | 5 cut(s) | 513, 1001, 1182, 1389, 1473 |
| MboI | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| MboII | GAAGA | 9 cut(s) | 57, 296, 308, 410, 413, 764, 913, 967, 1634 |
| MfeI | CAATTG | 1 cut(s) | 667 |
| MhlI | GDGCHC | 2 cut(s) | 352, 1045 |
| MluCI | AATT | 5 cut(s) | 667, 695, 902, 949, 1347 |
| MlyI | GAGTC | 3 cut(s) | 626, 1142, 1154 |
| MmeI | TCCRAC | 1 cut(s) | 703 |
| MroI | TCCGGA | 1 cut(s) | 457 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1639 |
| MseI | TTAA | 4 cut(s) | 108, 339, 1287, 1323 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1524 |
| MspA1I | CMGCKG | 3 cut(s) | 747, 971, 1453 |
| MspI | CCGG | 3 cut(s) | 458, 1064, 1311 |
| MspR9I | CCNGG | 8 cut(s) | 16, 354, 914, 1064, 1128, 1167, 1311, 1312 |
| MunI | CAATTG | 1 cut(s) | 667 |
| Mva1269I | GAATGC | 1 cut(s) | 719 |
| MvaI | CCWGG | 5 cut(s) | 16, 354, 914, 1128, 1167 |
| MvnI | CGCG | 2 cut(s) | 396, 985 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 393 |
| NciI | CCSGG | 3 cut(s) | 1064, 1311, 1312 |
| NdeII | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| NheI | GCTAGC | 1 cut(s) | 1433 |
| NlaIII | CATG | 8 cut(s) | 378, 426, 431, 584, 862, 1115, 1413, 1523 |
| NlaIV | GGNNCC | 1 cut(s) | 1336 |
| NmeAIII | GCCGAG | 1 cut(s) | 1024 |
| NmuCI | GTSAC | 5 cut(s) | 854, 887, 1115, 1132, 1514 |
| NruI | TCGCGA | 2 cut(s) | 396, 985 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 714 |
| PctI | GAATGC | 1 cut(s) | 719 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1639 |
| PfeI | GAWTC | 7 cut(s) | 11, 209, 404, 689, 1315, 1406, 1640 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 326, 428 |
| PfoI | TCCNGGA | 1 cut(s) | 1165 |
| PkrI | GCNGC | 4 cut(s) | 240, 359, 746, 783 |
| PleI | GAGTC | 3 cut(s) | 626, 1142, 1154 |
| PpsI | GAGTC | 3 cut(s) | 626, 1142, 1154 |
| Ppu21I | YACGTR | 1 cut(s) | 1575 |
| PshBI | ATTAAT | 2 cut(s) | 108, 339 |
| PsiI | TTATAA | 1 cut(s) | 812 |
| Psp124BI | GAGCTC | 1 cut(s) | 1045 |
| Psp6I | CCWGG | 5 cut(s) | 14, 352, 912, 1126, 1165 |
| PspEI | GGTNACC | 1 cut(s) | 1514 |
| PspFI | CCCAGC | 2 cut(s) | 326, 1562 |
| PspGI | CCWGG | 5 cut(s) | 14, 352, 912, 1126, 1165 |
| PspN4I | GGNNCC | 1 cut(s) | 1336 |
| PspPI | GGNCC | 3 cut(s) | 378, 542, 1396 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 577, 609 |
| PstI | CTGCAG | 1 cut(s) | 105 |
| PstNI | CAGNNNCTG | 1 cut(s) | 212 |
| PvuII | CAGCTG | 2 cut(s) | 747, 1453 |
| RruI | TCGCGA | 2 cut(s) | 396, 985 |
| RsaI | GTAC | 2 cut(s) | 117, 449 |
| RsaNI | GTAC | 2 cut(s) | 116, 448 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1524 |
| SacI | GAGCTC | 1 cut(s) | 1045 |
| SaqAI | TTAA | 4 cut(s) | 108, 339, 1287, 1323 |
| SatI | GCNGC | 4 cut(s) | 239, 358, 745, 782 |
| Sau3AI | GATC | 5 cut(s) | 511, 999, 1180, 1387, 1471 |
| Sau96I | GGNCC | 3 cut(s) | 378, 542, 1396 |
| ScaI | AGTACT | 1 cut(s) | 449 |
| SchI | GAGTC | 3 cut(s) | 626, 1142, 1154 |
| ScrFI | CCNGG | 8 cut(s) | 16, 354, 914, 1064, 1128, 1167, 1311, 1312 |
| SduI | GDGCHC | 2 cut(s) | 352, 1045 |
| SexAI | ACCWGGT | 1 cut(s) | 912 |
| SfaNI | GCATC | 5 cut(s) | 257, 559, 944, 1295, 1534 |
| SfcI | CTRYAG | 1 cut(s) | 101 |
| SinI | GGWCC | 3 cut(s) | 378, 542, 1396 |
| SmaI | CCCGGG | 1 cut(s) | 1312 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1524 |
| SmlI | CTYRAG | 1 cut(s) | 1678 |
| SmoI | CTYRAG | 1 cut(s) | 1678 |
| Sse9I | AATT | 5 cut(s) | 667, 695, 902, 949, 1347 |
| SsiI | CCGC | 4 cut(s) | 239, 839, 971, 1332 |
| SspI | AATATT | 1 cut(s) | 147 |
| SspMI | CTAG | 6 cut(s) | 194, 312, 845, 1434, 1503, 1511 |
| SstI | GAGCTC | 1 cut(s) | 1045 |
| StyD4I | CCNGG | 8 cut(s) | 14, 352, 912, 1062, 1126, 1165, 1309, 1310 |
| TaaI | ACNGT | 2 cut(s) | 710, 1079 |
| TaiI | ACGT | 4 cut(s) | 127, 617, 1074, 1577 |
| TasI | AATT | 5 cut(s) | 667, 695, 902, 949, 1347 |
| TatI | WGTACW | 1 cut(s) | 447 |
| TauI | GCSGC | 1 cut(s) | 241 |
| TfiI | GAWTC | 7 cut(s) | 11, 209, 404, 689, 1315, 1406, 1640 |
| Tru1I | TTAA | 4 cut(s) | 108, 339, 1287, 1323 |
| Tru9I | TTAA | 4 cut(s) | 108, 339, 1287, 1323 |
| TscAI | CASTG | 3 cut(s) | 280, 352, 1084 |
| TseFI | GTSAC | 5 cut(s) | 854, 887, 1115, 1132, 1514 |
| TseI | GCWGC | 3 cut(s) | 357, 744, 781 |
| Tsp45I | GTSAC | 5 cut(s) | 854, 887, 1115, 1132, 1514 |
| TspDTI | ATGAA | 6 cut(s) | 1100, 1104, 1137, 1392, 1398, 1536 |
| TspGWI | ACGGA | 1 cut(s) | 754 |
| TspMI | CCCGGG | 1 cut(s) | 1310 |
| TspRI | CASTG | 3 cut(s) | 280, 352, 1084 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 326, 428 |
| VneI | GTGCAC | 1 cut(s) | 348 |
| VpaK11BI | GGWCC | 3 cut(s) | 378, 542, 1396 |
| VspI | ATTAAT | 2 cut(s) | 108, 339 |
| XapI | RAATTY | 1 cut(s) | 949 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 22 |
| XmaI | CCCGGG | 1 cut(s) | 1310 |
| XmiI | GTMKAC | 1 cut(s) | 1074 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1639 |
| XspI | CTAG | 6 cut(s) | 194, 312, 845, 1434, 1503, 1511 |
| ZrmI | AGTACT | 1 cut(s) | 449 |