pycom14g17290
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013675
Physical Location & Seq
Reverse (-)
19290084 .. 19291100
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g17290.1

Sequence Viewer

Length: 1017 bp
ATGGGGACTTGTGTAATTCCAATGCCTGATTCTGATACTGAGTTATTTACCGACACGGGTTGCATAGTTGGAAAGGGCAGAATTGATTGCAGCTGTGAAGATGGAGAGTCTGTTAGATGTGTCAGGCAGCACATTTTGGAAGCAAGAGAGAAACTTGTAAAGACCATCGGGCCAAAGAGATTTGAGGAGCTAGGATTTAATGACATGGGAGAGCAAGTGACACAAACTTGGAGTGAAGAGGAGGAACAACTATTCCACCGGGTTGTCTTCTCAACTCCAACATCTTTGGGCAAGAATTTCTGGGACAAACTTTCAACTGTCTTCCCCTCCAGGACGAAAAAGGAGATTGTCAGTTACTATTTCAATGTCTTTATGCTTAGGAAGAGGGCGGAGCAGAACAGGTATGACCCAATGAATATTGATAGTGACAATGATGAATGGCAGGGGAGTAATGATTACGGTGACAATCAACCATCTGTGACAGAGGATGAGGACTCGGTGGTTGAGTCTCCTGAAGGTAGACGTGTTCCTGGTTATAATCGAAATTGGAAGGATGATTTGGAAGTGTTCGATGAGGACGATACGGATGAAACTTGTGATGATAATGTTGATGTGGATATGTTTGGGCGGGGACCTGAGCAAATTTTAGATAGATGCTCCGGATTGGTTGACAACTGCAGTTCCTGTCCCATACCTCAGCTTCAGGATAAGATTTCCTGGGATGAAAAGGTAGATCAAGAAGTCCAAGATGATTCATGCACGTCCGTTGATGCAGCCGTGGCTGCTTCGCAAGAGAGTCAGCGGAAGCCTGAGGACGGGAATCATTGGTCGGGTAGTTTTAACCGCGGTGACCACGAATATGTCTTGGAGCCTTGTGATGCCAAAATCTGGGATGCTGGGTATATGACCTTCCCCAAAAACAAGGTTGACTTCTTGCCAACTAGCAACATGATTGAAGAGGTTTTCGGGAAAGAATCATGGAATTACAAAGCAAGGGATGGCAAAAACTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

339

Amino Acids

38.59

Weight (kDa)

4.37

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 75 - 123 2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AccB7I CCANNNNNTGG 1 cut(s) 888
AccI GTMKAC 1 cut(s) 520
AccII CGCG 1 cut(s) 846
AccIII TCCGGA 1 cut(s) 659
AciI CCGC 5 cut(s) 389, 628, 802, 844, 846
AcsI RAATTY 2 cut(s) 295, 642
AcuI CTGAAG 2 cut(s) 534, 686
AfiI CCNNNNNNNGG 2 cut(s) 815, 888
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 3 cut(s) 315, 364, 956
AjiI CACGTC 2 cut(s) 524, 762
AjnI CCWGG 3 cut(s) 329, 529, 716
AjuI GAANNNNNNNTTGG 4 cut(s) 13, 45, 542, 574
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 93, 190, 700
AluI AGCT 3 cut(s) 93, 190, 700
Alw26I GTCTC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 684
Aor13HI TCCGGA 1 cut(s) 659
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 90, 127, 773, 782
ApoI RAATTY 2 cut(s) 295, 642
AspS9I GGNCC 2 cut(s) 170, 632
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 473, 860
AvaII GGWCC 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 810
BarI GAAGNNNNNNTAC 2 cut(s) 893, 925
BbsI GAAGAC 2 cut(s) 259, 313
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 4 cut(s) 102, 139, 769, 785
BccI CCATC 4 cut(s) 95, 173, 481, 992
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 3 cut(s) 331, 531, 718
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 3 cut(s) 191, 942, 1015
BfmI CTRYAG 1 cut(s) 676
BisI GCNGC 4 cut(s) 91, 128, 774, 783
BlsI GCNGC 4 cut(s) 92, 129, 775, 784
Bme1390I CCNGG 4 cut(s) 260, 331, 531, 718
Bme18I GGWCC 1 cut(s) 632
BmgBI CACGTC 2 cut(s) 524, 762
BmgT120I GGNCC 2 cut(s) 170, 632
BmiI GGNNCC 2 cut(s) 633, 870
BmrFI CCNGG 4 cut(s) 260, 331, 531, 718
BmsI GCATC 4 cut(s) 644, 760, 868, 883
BpiI GAAGAC 2 cut(s) 259, 313
BpmI CTGGAG 1 cut(s) 313
Bpu10I CCTNAGC 3 cut(s) 377, 636, 696
BpuMI CCSGG 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 717, 777, 844
BsaWI WCCGGW 1 cut(s) 659
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 201, 231
Bsc4I CCNNNNNNNGG 2 cut(s) 815, 888
Bse21I CCTNAGG 1 cut(s) 810
BseAI TCCGGA 1 cut(s) 659
BseBI CCWGG 3 cut(s) 331, 531, 718
BseDI CCNNGG 3 cut(s) 717, 777, 844
BseGI GGATG 6 cut(s) 493, 559, 592, 727, 898, 1003
BseLI CCNNNNNNNGG 2 cut(s) 815, 888
BseMII CTCAG 4 cut(s) 30, 627, 710, 801
BseRI GAGGAG 2 cut(s) 200, 254
BseXI GCAGC 4 cut(s) 102, 139, 769, 785
BseYI CCCAGC 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 846
BshFI GGCC 1 cut(s) 172
BsiSI CCGG 2 cut(s) 259, 660
BslFI GGGAC 4 cut(s) 19, 317, 645, 672
BslI CCNNNNNNNGG 2 cut(s) 815, 888
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 4 cut(s) 19, 317, 645, 672
BsnI GGCC 1 cut(s) 172
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 1 cut(s) 733
BspACI CCGC 5 cut(s) 389, 628, 802, 844, 846
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 4 cut(s) 31, 628, 709, 802
BspEI TCCGGA 1 cut(s) 659
BspFNI CGCG 1 cut(s) 846
BspLI GGNNCC 2 cut(s) 633, 870
BspMAI CTGCAG 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 717, 777, 844
BssMI GATC 1 cut(s) 733
Bst2UI CCWGG 3 cut(s) 331, 531, 718
Bst4CI ACNGT 2 cut(s) 319, 461
Bst6I CTCTTC 3 cut(s) 231, 377, 951
BstDEI CTNAG 5 cut(s) 39, 377, 636, 696, 810
BstDSI CCRYGG 2 cut(s) 777, 844
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 6 cut(s) 493, 559, 592, 727, 898, 1003
BstFNI CGCG 1 cut(s) 846
BstKTI GATC 1 cut(s) 736
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 1 cut(s) 733
BstMWI GCNNNNNNNGC 2 cut(s) 779, 782
BstNI CCWGG 3 cut(s) 331, 531, 718
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 4 cut(s) 258, 329, 529, 716
BstSFI CTRYAG 1 cut(s) 676
BstUI CGCG 1 cut(s) 846
BstV1I GCAGC 4 cut(s) 102, 139, 769, 785
BstV2I GAAGAC 2 cut(s) 259, 313
Bsu36I CCTNAGG 1 cut(s) 810
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 2 cut(s) 777, 844
BtrI CACGTC 2 cut(s) 524, 762
BtsCI GGATG 6 cut(s) 493, 559, 592, 727, 898, 1003
CaiI CAGNNNCTG 1 cut(s) 684
Cfr13I GGNCC 2 cut(s) 170, 632
Cfr42I CCGCGG 1 cut(s) 847
CviAII CATG 4 cut(s) 205, 756, 949, 978
CviJI RGCY 9 cut(s) 93, 172, 190, 700, 776, 782, 808, 871, 1014
CviKI_1 RGCY 9 cut(s) 93, 172, 190, 700, 776, 782, 808, 871, 1014
DdeI CTNAG 5 cut(s) 39, 377, 636, 696, 810
DpnI GATC 1 cut(s) 735
DpnII GATC 1 cut(s) 733
Eam1104I CTCTTC 3 cut(s) 231, 377, 951
EarI CTCTTC 3 cut(s) 231, 377, 951
EciI GGCGGA 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 2 cut(s) 534, 686
Eco81I CCTNAGG 1 cut(s) 810
Eco91I GGTNACC 1 cut(s) 848
EcoO109I RGGNCCY 1 cut(s) 632
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 3 cut(s) 329, 529, 716
FaeI CATG 4 cut(s) 208, 759, 952, 981
FalI AAGNNNNNCTT 2 cut(s) 914, 946
FaqI GGGAC 4 cut(s) 19, 317, 645, 672
FatI CATG 4 cut(s) 204, 755, 948, 977
FauI CCCGC 1 cut(s) 621
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 91, 128, 774, 783
FokI GGATG 6 cut(s) 500, 566, 599, 734, 905, 1010
Fsp4HI GCNGC 4 cut(s) 91, 128, 774, 783
FspBI CTAG 3 cut(s) 191, 942, 1015
GluI GCNGC 4 cut(s) 91, 128, 774, 783
GsaI CCCAGC 1 cut(s) 900
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 1 cut(s) 172
HapII CCGG 2 cut(s) 259, 660
Hin1II CATG 4 cut(s) 208, 759, 952, 981
HincII GTYRAC 2 cut(s) 670, 928
HindII GTYRAC 2 cut(s) 670, 928
HinfI GANTC 8 cut(s) 29, 107, 494, 506, 752, 796, 820, 974
HpaII CCGG 2 cut(s) 259, 660
HphI GGTGA 2 cut(s) 473, 860
Hpy166II GTNNAC 3 cut(s) 521, 670, 928
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 5 cut(s) 512, 660, 704, 737, 967
Hpy8I GTNNAC 3 cut(s) 521, 670, 928
HpyAV CCTTC 3 cut(s) 509, 544, 919
HpyCH4III ACNGT 2 cut(s) 319, 461
HpyCH4IV ACGT 2 cut(s) 523, 761
HpyCH4V TGCA 5 cut(s) 63, 90, 678, 759, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 779, 782
HpyF3I CTNAG 5 cut(s) 39, 377, 636, 696, 810
HpySE526I ACGT 2 cut(s) 523, 761
Hsp92II CATG 4 cut(s) 208, 759, 952, 981
Kpn2I TCCGGA 1 cut(s) 659
KspI CCGCGG 1 cut(s) 847
Kzo9I GATC 1 cut(s) 733
LmnI GCTCC 4 cut(s) 187, 391, 662, 868
Lsp1109I GCAGC 4 cut(s) 102, 139, 769, 785
LweI GCATC 4 cut(s) 644, 760, 868, 883
MaeI CTAG 3 cut(s) 191, 942, 1015
MaeII ACGT 2 cut(s) 523, 761
MaeIII GTNAC 6 cut(s) 217, 353, 425, 461, 478, 848
MalI GATC 1 cut(s) 735
MboI GATC 1 cut(s) 733
MboII GAAGA 6 cut(s) 110, 248, 259, 313, 394, 968
MluCI AATT 6 cut(s) 15, 81, 295, 544, 642, 982
MlyI GAGTC 4 cut(s) 116, 488, 515, 805
MmeI TCCRAC 2 cut(s) 49, 302
MroI TCCGGA 1 cut(s) 659
MseI TTAA 2 cut(s) 198, 840
MslI CAYNNNNRTG 1 cut(s) 858
MspA1I CMGCKG 3 cut(s) 93, 802, 846
MspI CCGG 2 cut(s) 259, 660
MspR9I CCNGG 4 cut(s) 260, 331, 531, 718
MvaI CCWGG 3 cut(s) 331, 531, 718
MvnI CGCG 1 cut(s) 846
MwoI GCNNNNNNNGC 2 cut(s) 779, 782
NciI CCSGG 1 cut(s) 260
NdeII GATC 1 cut(s) 733
NlaIII CATG 4 cut(s) 208, 759, 952, 981
NlaIV GGNNCC 2 cut(s) 633, 870
NmuCI GTSAC 5 cut(s) 217, 425, 461, 478, 848
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PfeI GAWTC 4 cut(s) 29, 752, 820, 974
PflMI CCANNNNNTGG 1 cut(s) 888
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 4 cut(s) 92, 129, 775, 784
PleI GAGTC 4 cut(s) 115, 488, 514, 804
PpsI GAGTC 4 cut(s) 115, 488, 514, 804
PpuMI RGGWCCY 1 cut(s) 632
PsiI TTATAA 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 3 cut(s) 329, 529, 716
PspEI GGTNACC 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 3 cut(s) 329, 529, 716
PspN4I GGNNCC 2 cut(s) 633, 870
PspPI GGNCC 2 cut(s) 170, 632
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 680
PstNI CAGNNNCTG 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 858
SacII CCGCGG 1 cut(s) 847
SaqAI TTAA 2 cut(s) 198, 840
SatI GCNGC 4 cut(s) 91, 128, 774, 783
Sau3AI GATC 1 cut(s) 733
Sau96I GGNCC 2 cut(s) 170, 632
SchI GAGTC 4 cut(s) 116, 488, 515, 805
ScrFI CCNGG 4 cut(s) 260, 331, 531, 718
SfaNI GCATC 4 cut(s) 644, 760, 868, 883
SfcI CTRYAG 1 cut(s) 676
Sfr303I CCGCGG 1 cut(s) 847
SgrBI CCGCGG 1 cut(s) 847
SinI GGWCC 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 858
Sse9I AATT 6 cut(s) 15, 81, 295, 544, 642, 982
SsiI CCGC 5 cut(s) 389, 628, 802, 844, 846
SspI AATATT 1 cut(s) 418
SspMI CTAG 3 cut(s) 191, 942, 1015
StyD4I CCNGG 4 cut(s) 258, 329, 529, 716
TaaI ACNGT 2 cut(s) 319, 461
TaiI ACGT 2 cut(s) 526, 764
TaqI TCGA 2 cut(s) 541, 570
TasI AATT 6 cut(s) 15, 81, 295, 544, 642, 982
TfiI GAWTC 4 cut(s) 29, 752, 820, 974
Tru1I TTAA 2 cut(s) 198, 840
Tru9I TTAA 2 cut(s) 198, 840
TseFI GTSAC 5 cut(s) 217, 425, 461, 478, 848
TseI GCWGC 4 cut(s) 90, 127, 773, 782
Tsp45I GTSAC 5 cut(s) 217, 425, 461, 478, 848
TspDTI ATGAA 5 cut(s) 428, 450, 603, 738, 744
TspGWI ACGGA 2 cut(s) 599, 754
Van91I CCANNNNNTGG 1 cut(s) 888
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 2 cut(s) 295, 642
XmiI GTMKAC 1 cut(s) 520
XspI CTAG 3 cut(s) 191, 942, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.