Prupe.5G212200_v2.0.a1

phenylalanine--tRNA ligase beta

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
16813743 .. 16822788
9046 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G212200.1

Sequence Viewer

Length: 1767 bp
ATGCCTACCGTCAGCGTGGGACGGGATCGTCTGTATGCAGCACTAGGAAGAACTTACACTCAGGAAGAGTTTGAAGAAGTATGCTTCAGCTTCGGCATCGAGCTGGACGACGTCACAACTGAGAAAGCAATTATTAGAAAAGAAAAGCATTTGGACGCTGAAGTTGAGGAAGATGAAGAAGTTATTTACAAGATCGAAGTTCCCGCGAATAGATATGATTTACTTTGCCTTGAAGGGCTTGCTCAAGCCCTCCGTGTTTTCAGTAGGGAAGAGGAGATTCCTACATATAAGTTGGTGAACATTAGTAAGGAGTCAATGATTAAAATGCATGTAAAACCAGAGACATCTTCAATTCGCCCTCATGTTGTCTGTGCTGTTTTAAGAGGCGTAACCTTCACTGAAGCAAGTTATAACAGCTTTATTGATCTCCAAGACAAGCTTCATCAAAATATCTGCCGGCGAAGAACCCTAGTTGCCATTGGGACTCATGACTTGGATACATTACAAGCCCCTTTCACATATGAGGCTTTGCCACCTTCAAGTATAAATTTTGTGCCTCTGAAACAGGTGAAGAGCTTTAGAGCTGATGAGCTCATTGAATTTTACAGATCAGATTTGAAACTGAAGAAGTTTGTGCACATAATAGAGAACTCACCGGTGTTTCCTGTTTTATATGATCACAACAGAATTGTTTTGTCTTTACCCCCCATTATTAATGGTGCACATTCAGCAATCAATTTGAAGACAAAGAATGTTTTCATAGAATGTACAGCTACTGATTTGACAAAGGCCAAGATTGTTCTGAACACAATAGTGACAGCATTTTCAGCGTATTGTGAAAGAAAGTTTGAGATTGAACCTGTTGAAGTGATATATTCAGATGGAAAGTCATATGTCTATCCTGATTTATCAATCTACAACATGGATGTTTCCCTATCATACGTTAACGGTACAATTGGAGTCTCTTTGGAAGCAGAAGAGGTTACTGATTTGTTGAATCGGATGCAATTGCGTGCTGAGCAGTCTGTATCAAGCGATATCACAGTATTTGTACCTCCAACCAGAAGCGACATTCTTCATCCTTGTGATGTCATGGAGGATGTTGCAATTGCATATGGATATAATAATATCCCAAAGCGAAGTCCTGCATCTTTGAAGCCACTAGCCTTGAATGAGCTCACTGACCATATTAAATTAGAGATTGCAATGACTGGGTTTACAGAGGTGTTGACGTTTATATTGGGGTCGTGGAGAGAAAATTTTGCCATGTTAAATCGTAAAGATGATAAATCGAAGGCAGTGGTTGTTGGAAATCCTCGTTCATCTGATTTTGAACTTGTCCGAACCAGTTTGATGCCTGGCGTATTGAAAACTGTTGGTCACAACAAAGATCATCCAAAGCCCATAAAGATTTTCGAAGTGGGTGATGTAGCACTATTGGATGAGAGGAAAGATGTTGGTGCGAGAAATCAACGCCAACTAGCAGCTCTTTTCTGTGGTGCTAGCTCTGGGTTTGAGTTGATTCATGGCTTGGTGGACAGAGTTATGGAAGCGATTGGTGCTGCTTTTGTTCCTATCGGTGACCATACTGGGTACTTCATACAACCTTCGGATGAACCTGAGTTTCTTCCGGGTAGGCAAGCAAGCATCATCTATAAAGGGAAGCACATTGGAACTTTTGGCATTGTGCACCCTGAGGTGTTAAACAACTTCGACATTCCTGATCCGTGCTCGTTTGTAGAACTTAACGTTGAGAGTTTGTTGTAG

Protein Analysis

589

Amino Acids

66.02

Weight (kDa)

5.3

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AasI GACNNNNNNGTC 1 cut(s) 27
AatII GACGTC 1 cut(s) 114
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 204
AclI AACGTT 1 cut(s) 1749
AclWI GGATC 2 cut(s) 33, 1718
AcsI RAATTY 3 cut(s) 547, 599, 1258
AcuI CTGAAG 4 cut(s) 70, 180, 420, 644
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 4 cut(s) 769, 952, 1053, 1595
AgeI ACCGGT 1 cut(s) 655
AjnI CCWGG 1 cut(s) 1357
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AleI CACNNNNGTG 1 cut(s) 812
Alw21I GWGCWC 6 cut(s) 594, 639, 724, 1179, 1692, 1733
Alw26I GTCTC 2 cut(s) 335, 967
Alw44I GTGCAC 3 cut(s) 635, 720, 1688
AlwI GGATC 2 cut(s) 33, 1718
AlwNI CAGNNNCTG 1 cut(s) 776
AoxI GGCC 1 cut(s) 789
ApaLI GTGCAC 3 cut(s) 635, 720, 1688
ApeKI GCWGC 3 cut(s) 38, 1484, 1562
ApoI RAATTY 3 cut(s) 547, 599, 1258
AseI ATTAAT 1 cut(s) 714
AsiGI ACCGGT 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 755
AsuC2I CCSGG 1 cut(s) 1632
AsuHPI GGTGA 5 cut(s) 307, 580, 645, 1436, 1592
AsuII TTCGAA 1 cut(s) 1416
AsuNHI GCTAGC 1 cut(s) 1502
AxyI CCTNAGG 1 cut(s) 1695
BaeGI GKGCMC 3 cut(s) 639, 724, 1692
BanII GRGCYC 2 cut(s) 594, 1179
BbsI GAAGAC 1 cut(s) 749
Bbv12I GWGCWC 6 cut(s) 594, 639, 724, 1179, 1692, 1733
BbvI GCAGC 3 cut(s) 50, 1496, 1549
BccI CCATC 1 cut(s) 875
BciT130I CCWGG 1 cut(s) 1359
BciVI GTATCC 1 cut(s) 490
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 1632
BcoDI GTCTC 2 cut(s) 335, 967
BfaI CTAG 5 cut(s) 44, 470, 1163, 1481, 1503
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 3 cut(s) 39, 1485, 1563
BlpI GCTNAGC 1 cut(s) 1017
BlsI GCNGC 3 cut(s) 40, 1486, 1564
Bme1390I CCNGG 2 cut(s) 1359, 1632
BmrFI CCNGG 2 cut(s) 1359, 1632
BmrI ACTGGG 2 cut(s) 1221, 1599
BmsI GCATC 5 cut(s) 105, 993, 1157, 1344, 1656
BmtI GCTAGC 1 cut(s) 1506
BmuI ACTGGG 2 cut(s) 1221, 1599
BpiI GAAGAC 1 cut(s) 749
Bpu1102I GCTNAGC 1 cut(s) 1017
Bpu14I TTCGAA 1 cut(s) 1416
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 1632
BsaHI GRCGYC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 655
Bse118I RCCGGY 2 cut(s) 456, 655
Bse1I ACTGG 3 cut(s) 1216, 1347, 1594
Bse21I CCTNAGG 1 cut(s) 1695
Bse3DI GCAATG 1 cut(s) 1212
BseBI CCWGG 1 cut(s) 1359
BseGI GGATG 7 cut(s) 931, 1008, 1078, 1105, 1393, 1447, 1618
BseMI GCAATG 1 cut(s) 1212
BseMII CTCAG 5 cut(s) 74, 111, 1008, 1611, 1686
BseNI ACTGG 3 cut(s) 1216, 1347, 1594
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 3 cut(s) 639, 724, 1692
BseXI GCAGC 3 cut(s) 50, 1496, 1549
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 791
BshTI ACCGGT 1 cut(s) 655
BsiHKAI GWGCWC 6 cut(s) 594, 639, 724, 1179, 1692, 1733
BsiSI CCGG 3 cut(s) 457, 656, 1631
BslFI GGGAC 2 cut(s) 33, 496
BsmAI GTCTC 2 cut(s) 335, 967
BsmFI GGGAC 2 cut(s) 33, 496
BsnI GGCC 1 cut(s) 791
Bsp119I TTCGAA 1 cut(s) 1416
Bsp1286I GDGCHC 6 cut(s) 594, 639, 724, 1179, 1692, 1733
Bsp1407I TGTACA 1 cut(s) 767
Bsp143I GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
Bsp1720I GCTNAGC 1 cut(s) 1017
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 5 cut(s) 73, 112, 1009, 1612, 1687
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 487
BspOI GCTAGC 1 cut(s) 1506
BspPI GGATC 2 cut(s) 33, 1718
BspQI GCTCTTC 1 cut(s) 566
BspT104I TTCGAA 1 cut(s) 1416
BsrDI GCAATG 1 cut(s) 1212
BsrFI RCCGGY 2 cut(s) 456, 655
BsrGI TGTACA 1 cut(s) 767
BsrI ACTGG 3 cut(s) 1216, 1347, 1594
BssAI RCCGGY 2 cut(s) 456, 655
BssMI GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
BssNI GRCGYC 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 1359
Bst4CI ACNGT 4 cut(s) 10, 950, 1045, 1375
Bst6I CTCTTC 4 cut(s) 60, 264, 566, 972
BstACI GRCGYC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 767
BstBI TTCGAA 1 cut(s) 1416
BstC8I GCNNGC 6 cut(s) 240, 458, 1014, 1504, 1641, 1645
BstDEI CTNAG 5 cut(s) 60, 120, 1017, 1620, 1695
BstEII GGTNACC 1 cut(s) 1580
BstF5I GGATG 7 cut(s) 931, 1008, 1078, 1105, 1393, 1447, 1618
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 7 cut(s) 28, 195, 427, 611, 679, 1393, 1726
BstMAI GTCTC 2 cut(s) 335, 967
BstMBI GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
BstMWI GCNNNNNNNGC 4 cut(s) 728, 827, 1018, 1559
BstNI CCWGG 1 cut(s) 1359
BstNSI RCATGY 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 1580
BstSCI CCNGG 2 cut(s) 1357, 1630
BstSLI GKGCMC 3 cut(s) 639, 724, 1692
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 50, 1496, 1549
BstV2I GAAGAC 1 cut(s) 749
Bsu36I CCTNAGG 1 cut(s) 1695
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 791
BtsCI GGATG 7 cut(s) 931, 1008, 1078, 1105, 1393, 1447, 1618
BtsI GCAGTG 1 cut(s) 1305
BtsIMutI CAGTG 3 cut(s) 396, 1179, 1305
Cac8I GCNNGC 6 cut(s) 240, 458, 1014, 1504, 1641, 1645
CaiI CAGNNNCTG 1 cut(s) 776
CciI TCATGA 1 cut(s) 487
Cfr10I RCCGGY 2 cut(s) 456, 655
CseI GACGC 1 cut(s) 164
Csp6I GTAC 4 cut(s) 768, 951, 1052, 1594
CspAI ACCGGT 1 cut(s) 655
CspCI CAANNNNNGTGG 2 cut(s) 1149, 1184
CviAII CATG 7 cut(s) 329, 362, 488, 922, 1093, 1267, 1526
CviQI GTAC 4 cut(s) 768, 951, 1052, 1594
DdeI CTNAG 5 cut(s) 60, 120, 1017, 1620, 1695
DpnI GATC 7 cut(s) 27, 194, 426, 610, 678, 1392, 1725
DpnII GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
DrdI GACNNNNNNGTC 1 cut(s) 27
DseDI GACNNNNNNGTC 1 cut(s) 27
Eam1104I CTCTTC 4 cut(s) 60, 264, 566, 972
EarI CTCTTC 4 cut(s) 60, 264, 566, 972
Ecl136II GAGCTC 2 cut(s) 592, 1177
Eco24I GRGCYC 2 cut(s) 594, 1179
Eco32I GATATC 1 cut(s) 1039
Eco53kI GAGCTC 2 cut(s) 592, 1177
Eco57I CTGAAG 4 cut(s) 70, 180, 420, 644
Eco81I CCTNAGG 1 cut(s) 1695
Eco91I GGTNACC 1 cut(s) 1580
EcoICRI GAGCTC 2 cut(s) 592, 1177
EcoO65I GGTNACC 1 cut(s) 1580
EcoRII CCWGG 1 cut(s) 1357
EcoRV GATATC 1 cut(s) 1039
EcoT22I ATGCAT 1 cut(s) 330
EcoT38I GRGCYC 2 cut(s) 594, 1179
FaeI CATG 7 cut(s) 332, 365, 491, 925, 1096, 1270, 1529
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 2 cut(s) 33, 496
FatI CATG 7 cut(s) 328, 361, 487, 921, 1092, 1266, 1525
FauI CCCGC 1 cut(s) 211
FauNDI CATATG 3 cut(s) 520, 892, 1114
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 3 cut(s) 39, 1485, 1563
FokI GGATG 7 cut(s) 938, 1015, 1065, 1112, 1380, 1454, 1625
FriOI GRGCYC 2 cut(s) 594, 1179
Fsp4HI GCNGC 3 cut(s) 39, 1485, 1563
FspBI CTAG 5 cut(s) 44, 470, 1163, 1481, 1503
GluI GCNGC 3 cut(s) 39, 1485, 1563
HaeIII GGCC 1 cut(s) 791
HapII CCGG 3 cut(s) 457, 656, 1631
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 7 cut(s) 332, 365, 491, 925, 1096, 1270, 1529
HincII GTYRAC 2 cut(s) 946, 1230
HindII GTYRAC 2 cut(s) 946, 1230
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 6 cut(s) 277, 311, 484, 960, 997, 1522
HpaI GTTAAC 1 cut(s) 946
HpaII CCGG 3 cut(s) 457, 656, 1631
HphI GGTGA 5 cut(s) 307, 580, 645, 1436, 1592
Hpy166II GTNNAC 8 cut(s) 298, 637, 722, 946, 1218, 1230, 1537, 1690
Hpy188I TCNGA 8 cut(s) 561, 613, 804, 880, 1002, 1327, 1343, 1612
Hpy188III TCNNGA 4 cut(s) 62, 488, 902, 1721
Hpy8I GTNNAC 8 cut(s) 298, 637, 722, 946, 1218, 1230, 1537, 1690
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 227, 403, 546, 1288, 1617
HpyCH4III ACNGT 4 cut(s) 10, 950, 1045, 1375
HpyCH4IV ACGT 4 cut(s) 111, 942, 1232, 1749
HpyF10VI GCNNNNNNNGC 4 cut(s) 728, 827, 1018, 1559
HpyF3I CTNAG 5 cut(s) 60, 120, 1017, 1620, 1695
HpySE526I ACGT 4 cut(s) 111, 942, 1232, 1749
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 7 cut(s) 332, 365, 491, 925, 1096, 1270, 1529
KroI GCCGGC 1 cut(s) 456
KroNI GCCGGC 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 676
KspAI GTTAAC 1 cut(s) 946
Kzo9I GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
LguI GCTCTTC 1 cut(s) 566
Lsp1109I GCAGC 3 cut(s) 50, 1496, 1549
LweI GCATC 5 cut(s) 105, 993, 1157, 1344, 1656
MaeI CTAG 5 cut(s) 44, 470, 1163, 1481, 1503
MaeII ACGT 4 cut(s) 111, 942, 1232, 1749
MaeIII GTNAC 6 cut(s) 112, 388, 814, 982, 1379, 1580
MalI GATC 7 cut(s) 27, 194, 426, 610, 678, 1392, 1725
MboI GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
MfeI CAATTG 3 cut(s) 954, 1007, 1107
MhlI GDGCHC 6 cut(s) 594, 639, 724, 1179, 1692, 1733
MlyI GAGTC 3 cut(s) 320, 478, 969
MmeI TCCRAC 2 cut(s) 1082, 1288
Mph1103I ATGCAT 1 cut(s) 330
MroNI GCCGGC 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 8 cut(s) 321, 380, 714, 945, 1191, 1271, 1703, 1746
MslI CAYNNNNRTG 2 cut(s) 812, 1083
MspI CCGG 3 cut(s) 457, 656, 1631
MspR9I CCNGG 2 cut(s) 1359, 1632
MunI CAATTG 3 cut(s) 954, 1007, 1107
MvaI CCWGG 1 cut(s) 1359
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 728, 827, 1018, 1559
NaeI GCCGGC 1 cut(s) 458
NciI CCSGG 1 cut(s) 1632
NdeI CATATG 3 cut(s) 520, 892, 1114
NdeII GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
NgoMIV GCCGGC 1 cut(s) 456
NheI GCTAGC 1 cut(s) 1502
NlaIII CATG 7 cut(s) 332, 365, 491, 925, 1096, 1270, 1529
NmuCI GTSAC 4 cut(s) 112, 814, 1379, 1580
NsiI ATGCAT 1 cut(s) 330
NspI RCATGY 1 cut(s) 332
NspV TTCGAA 1 cut(s) 1416
OliI CACNNNNGTG 1 cut(s) 812
PagI TCATGA 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 566
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 3 cut(s) 277, 997, 1522
PflFI GACNNNGTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 655
PkrI GCNGC 3 cut(s) 40, 1486, 1564
PleI GAGTC 3 cut(s) 319, 478, 968
PpsI GAGTC 3 cut(s) 319, 478, 968
PshBI ATTAAT 1 cut(s) 714
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 2 cut(s) 594, 1179
Psp1406I AACGTT 1 cut(s) 1749
Psp6I CCWGG 1 cut(s) 1357
PspEI GGTNACC 1 cut(s) 1580
PspGI CCWGG 1 cut(s) 1357
PstNI CAGNNNCTG 1 cut(s) 776
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 4 cut(s) 769, 952, 1053, 1595
RsaNI GTAC 4 cut(s) 768, 951, 1052, 1594
RseI CAYNNNNRTG 2 cut(s) 812, 1083
SacI GAGCTC 2 cut(s) 594, 1179
SapI GCTCTTC 1 cut(s) 566
SaqAI TTAA 8 cut(s) 321, 380, 714, 945, 1191, 1271, 1703, 1746
SatI GCNGC 3 cut(s) 39, 1485, 1563
Sau3AI GATC 7 cut(s) 25, 192, 424, 608, 676, 1390, 1723
SchI GAGTC 3 cut(s) 320, 478, 969
ScrFI CCNGG 2 cut(s) 1359, 1632
SduI GDGCHC 6 cut(s) 594, 639, 724, 1179, 1692, 1733
SfaNI GCATC 5 cut(s) 105, 993, 1157, 1344, 1656
SfuI TTCGAA 1 cut(s) 1416
SgrAI CRCCGGYG 1 cut(s) 655
SmiMI CAYNNNNRTG 2 cut(s) 812, 1083
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SsiI CCGC 1 cut(s) 204
SspMI CTAG 5 cut(s) 44, 470, 1163, 1481, 1503
SstI GAGCTC 2 cut(s) 594, 1179
StyD4I CCNGG 2 cut(s) 1357, 1630
TaaI ACNGT 4 cut(s) 10, 950, 1045, 1375
TaiI ACGT 4 cut(s) 114, 945, 1235, 1752
TaqI TCGA 5 cut(s) 99, 195, 1292, 1416, 1713
TatI WGTACW 1 cut(s) 767
TfiI GAWTC 3 cut(s) 277, 997, 1522
Tru1I TTAA 8 cut(s) 321, 380, 714, 945, 1191, 1271, 1703, 1746
Tru9I TTAA 8 cut(s) 321, 380, 714, 945, 1191, 1271, 1703, 1746
TscAI CASTG 3 cut(s) 403, 1186, 1305
TseFI GTSAC 4 cut(s) 112, 814, 1379, 1580
TseI GCWGC 3 cut(s) 38, 1484, 1562
Tsp45I GTSAC 4 cut(s) 112, 814, 1379, 1580
TspDTI ATGAA 8 cut(s) 189, 431, 748, 1067, 1311, 1514, 1588, 1629
TspGWI ACGGA 2 cut(s) 242, 1716
TspRI CASTG 3 cut(s) 403, 1186, 1305
Tth111I GACNNNGTC 1 cut(s) 110
VneI GTGCAC 3 cut(s) 635, 720, 1688
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 3 cut(s) 547, 599, 1258
XceI RCATGY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 5 cut(s) 44, 470, 1163, 1481, 1503
ZraI GACGTC 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.