Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006229

Physical Location & Seq

Genomic Coordinates Reverse (-)

24325734 .. 24326598

Gene Structure 865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGAGAAACTAATCAATACCAAAGTCAACTTATCAAAAACGGAGCGATCGACGGCAGTTTCGCTTCTGATAGACTGGTGACTCGGATCTCTGGTGTTAGGGGCGGTCTCGGCTCTCTGGTGGTCGTCGGCGCTCTGCGATTGGGGTTCGGCGTACATGAGTTCAATGTTGGTCGGCCTCTGCTCGCCGGCGTCGAAGCCTTCCTTCATCCTCCAGTGTTGGTTTCAGGTCCAGCTAGTCGGCGACGAGAGCAGGAGCCTCTCAGAGGATTCCGGTACGGGTCATGTGGCTTCAAGAGTTGGGTTCGTTGGGTCACTGGCATCCTGTCGTCCTCTGTGGTACAGGATGCTGATGATGACGAGAAATTCGATGAGGACGAAGTTGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.24

Weight (kDa)

5.41

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72550 AT1G72550
fragaria_vesca	FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020
malus_domestica	MD06G1208000.v1.1 MD14G1218400.v1.1
prunus_persica	Prupe.5G041000_v2.0.a1 Prupe.5G212200_v2.0.a1
pyrus_communis	pycom12g20030
rosa_chinensis	RchiOBHm_Chr7g0184111
rosa_laevigata	RLG00000004999 RLG00000026882 RLG00000028559
rosa_multiflora	Rmu_sc0004712.1_g000004 Rmu_sc0025350.1_g000009
rosa_roxburghii	Rroxscaffold_3G00269870
rosa_rugosa	Rorug06G0463100
rosa_samantha	Rh7AG082700 Rh7BG064300 Rh7CG064900 Rh7DG064500
rosa_wichuraiana	Rw0G002490 Rw7G005290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	156, 278, 342
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	166, 295
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	365
ArsI	GACNNNNNNTTYG	4 cut(s)	44, 76, 350, 382
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	2 cut(s)	330, 337
BpmI	CTGGAG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	81, 215, 322
BseGI	GGATG	3 cut(s)	208, 321, 352
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	3 cut(s)	81, 215, 322
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	189, 274
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	48, 87
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	3 cut(s)	81, 215, 322
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	2 cut(s)	48, 87
BssNI	GRCGYC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	186, 190
BstDEI	CTNAG	1 cut(s)	263
BstENI	CCTNNNNNAGG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	208, 321, 352
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	51, 90
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	48, 87
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 250
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	208, 321, 352
BtsIMutI	CAGTG	2 cut(s)	222, 315
Cac8I	GCNNGC	2 cut(s)	186, 190
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	155, 277, 341
CviAII	CATG	2 cut(s)	158, 285
CviJI	RGCY	6 cut(s)	114, 178, 200, 236, 259, 291
CviKI_1	RGCY	6 cut(s)	114, 178, 200, 236, 259, 291
CviQI	GTAC	3 cut(s)	155, 277, 341
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	2 cut(s)	50, 89
DpnII	GATC	2 cut(s)	48, 87
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	161, 288
FaiI	YATR	2 cut(s)	159, 286
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	2 cut(s)	157, 284
FokI	GGATG	3 cut(s)	195, 308, 359
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	189, 274
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	161, 288
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	82, 270
HpaII	CCGG	2 cut(s)	189, 274
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	70, 87, 266
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	4 cut(s)	56, 131, 197, 249
HpyAV	CCTTC	2 cut(s)	211, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 250
HpyF3I	CTNAG	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	161, 288
HspAI	GCGC	1 cut(s)	132
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	48, 87
LmnI	GCTCC	2 cut(s)	44, 256
LweI	GCATC	2 cut(s)	330, 337
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	79, 313
MalI	GATC	2 cut(s)	50, 89
MboI	GATC	2 cut(s)	48, 87
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	6 cut(s)	189, 222, 260, 270, 343, 367
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspI	CCGG	2 cut(s)	189, 274
MwoI	GCNNNNNNNGC	2 cut(s)	111, 250
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	2 cut(s)	48, 87
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	161, 288
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	79, 313
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 192, 366, 375
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	270
Ple19I	CGATCG	1 cut(s)	51
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	87
PvuI	CGATCG	1 cut(s)	51
RsaI	GTAC	3 cut(s)	156, 278, 342
RsaNI	GTAC	3 cut(s)	155, 277, 341
Sau3AI	GATC	2 cut(s)	48, 87
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	76
SetI	ASST	2 cut(s)	232, 238
SfaNI	GCATC	2 cut(s)	330, 337
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	237
TaqI	TCGA	3 cut(s)	51, 195, 369
TasI	AATT	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	270
TscAI	CASTG	2 cut(s)	222, 322
TseFI	GTSAC	2 cut(s)	79, 313
Tsp45I	GTSAC	2 cut(s)	79, 313
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	222, 322
VpaK11BI	GGWCC	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	264
XapI	RAATTY	1 cut(s)	365
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.