Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006229

Physical Location & Seq

Genomic Coordinates Reverse (-)

58850578 .. 58851349

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0463100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCACCATCTTTGAGAGACGTGAATTTACCACCACCGTTTATCAAAGGTATGAAAACAGAACCTACCGAAGCAAATCCTGCGTGGACGTACTTCCGATCAAATTCTACCGGTGGAAGACATATTCAGACCATAACCCAGATATGCAAGTTTTTGACACTAAACCTCCAATTTTGTCATCTACAAAAGTTCTCAAGTTGCGGTTCTCGAGGGAGAGGGCAAGTGGAAATGCAAGGACAACGATGGAGAGACTTGCTAGGTATCAAAGGGTCATAGCTGGGTCTCCCAGGGAAGCAAACAAGTTACAGAACAAGTTGGGTAGGTACCTTACCACAACTTTGGGAATTCACGAAGATGAGCAACCGTTTGTTATTGTAAAAGTATTGGAAATGCTCCGAGAAGCCGTCCCCGATAAAATTATAGAAGTGCACTTGATAGAAATTACATTTAGAAGTACGAATTGGTCCTTTCTGTGGGGCTTCGACAAGGACGGGGACGATATACACTACAGGGCTAAGCTAGTTCCTGCTCCAAAATCATTCATCGAGTCTCTGGAGGAAGTGAGACTACTTGATGATGATAATCTGGAATTGCTTGGATTGGAGTGTCCTATTTGTTTGCAGGTGTTTGCAGAGAAAAAAGATACCAGCATTACTCGATTGCCATGCTCACACTATTATCATCGAGATTGCATTGTCCAGTGGCTCCAGATCAATCATGTCTGCCCCACTTGTCGACACCCTAATGCTCCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

B3_4 B5 tRNA-synt_2d

Protein Analysis

252

Amino Acids

29.6

Weight (kDa)

8.62

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	202 - 246	2e-13	Ring finger domain
zf-RING_11	PF17123	202 - 232	7.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	202 - 245	5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	203 - 245	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	203 - 243	6.4e-06	RING-type zinc-finger
zf-rbx1	PF12678	206 - 246	1.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72550 AT1G72550
fragaria_vesca	FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020
malus_domestica	MD06G1208000.v1.1 MD14G1218400.v1.1
prunus_persica	Prupe.5G041000_v2.0.a1 Prupe.5G212200_v2.0.a1
pyrus_communis	pycom12g20030
rosa_chinensis	RchiOBHm_Chr7g0184111
rosa_laevigata	RLG00000004999 RLG00000026882 RLG00000028559
rosa_multiflora	Rmu_sc0004712.1_g000004 Rmu_sc0025350.1_g000009
rosa_roxburghii	Rroxscaffold_3G00269870
rosa_rugosa	Rorug06G0463100
rosa_samantha	Rh7AG082700 Rh7BG064300 Rh7CG064900 Rh7DG064500
rosa_wichuraiana	Rw0G002490 Rw7G005290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	736
AciI	CCGC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	26, 104, 345
AfaI	GTAC	3 cut(s)	93, 326, 457
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgeI	ACCGGT	1 cut(s)	111
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	287
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	2 cut(s)	278, 520
AluI	AGCT	2 cut(s)	278, 520
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	5 cut(s)	13, 244, 288, 555, 559
Alw44I	GTGCAC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	428
ApoI	RAATTY	3 cut(s)	26, 104, 345
AsiGI	ACCGGT	1 cut(s)	111
Asp718I	GGTACC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	324
BarI	GAAGNNNNNNTAC	2 cut(s)	552, 584
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	2 cut(s)	17, 238
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	648, 682
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BfaI	CTAG	2 cut(s)	258, 521
BfmI	CTRYAG	1 cut(s)	508
BfuAI	ACCTGC	1 cut(s)	613
BlpI	GCTNAGC	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	465
BmeT110I	CYCGRG	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	2 cut(s)	326, 707
BmrFI	CCNGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	2 cut(s)	575, 692
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	287, 288
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	287, 288
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	700
BseSI	GKGCMC	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	324
BshTI	ACCGGT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	392, 509
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	392, 509
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	99, 711
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	326, 707
BspMI	ACCTGC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	287, 288
BssMI	GATC	2 cut(s)	99, 711
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	40, 366
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	516
BstKTI	GATC	2 cut(s)	102, 714
BstMAI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BstMBI	GATC	2 cut(s)	99, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	707
BveI	ACCTGC	1 cut(s)	613
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	465
Csp6I	GTAC	3 cut(s)	92, 325, 456
CspAI	ACCGGT	1 cut(s)	111
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	2 cut(s)	666, 719
CviJI	RGCY	7 cut(s)	5, 278, 404, 480, 515, 520, 706
CviKI_1	RGCY	7 cut(s)	5, 278, 404, 480, 515, 520, 706
CviQI	GTAC	3 cut(s)	92, 325, 456
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	2 cut(s)	101, 713
DpnII	GATC	2 cut(s)	99, 711
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	2 cut(s)	669, 722
FaiI	YATR	9 cut(s)	54, 124, 135, 146, 275, 422, 503, 667, 720
FaqI	GGGAC	2 cut(s)	392, 509
FatI	CATG	2 cut(s)	665, 718
FblI	GTMKAC	1 cut(s)	736
FspBI	CTAG	2 cut(s)	258, 521
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	575, 692
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	669, 722
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	88, 430, 737
Hpy188I	TCNGA	4 cut(s)	99, 130, 398, 753
Hpy188III	TCNNGA	6 cut(s)	208, 350, 554, 587, 686, 709
Hpy8I	GTNNAC	3 cut(s)	88, 430, 737
HpyCH4III	ACNGT	2 cut(s)	40, 366
HpyCH4IV	ACGT	2 cut(s)	22, 90
HpyCH4V	TGCA	6 cut(s)	148, 233, 430, 622, 632, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	2 cut(s)	22, 90
Hsp92II	CATG	2 cut(s)	669, 722
KpnI	GGTACC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	99, 711
LmnI	GCTCC	4 cut(s)	399, 535, 711, 754
MaeI	CTAG	2 cut(s)	258, 521
MaeII	ACGT	2 cut(s)	22, 90
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	2 cut(s)	101, 713
MboI	GATC	2 cut(s)	99, 711
MboII	GAAGA	2 cut(s)	130, 365
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	26, 104, 171, 345, 417, 441, 460, 590
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	557
MnlI	CCTC	4 cut(s)	177, 204, 210, 550
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	354, 744
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	2 cut(s)	99, 711
NlaIII	CATG	2 cut(s)	669, 722
NlaIV	GGNNCC	2 cut(s)	326, 707
PaeR7I	CTCGAG	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	613
PasI	CCCWGGG	1 cut(s)	288
PinAI	ACCGGT	1 cut(s)	111
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	326, 707
PspPI	GGNCC	1 cut(s)	465
RsaI	GTAC	3 cut(s)	93, 326, 457
RsaNI	GTAC	3 cut(s)	92, 325, 456
RseI	CAYNNNNRTG	2 cut(s)	354, 744
SalI	GTCGAC	1 cut(s)	735
Sau3AI	GATC	2 cut(s)	99, 711
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	508
Sfr274I	CTCGAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	354, 744
SmlI	CTYRAG	2 cut(s)	194, 208
SmoI	CTYRAG	2 cut(s)	194, 208
Sse9I	AATT	8 cut(s)	26, 104, 171, 345, 417, 441, 460, 590
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	2 cut(s)	258, 521
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	40, 366
TaiI	ACGT	2 cut(s)	25, 93
TaqI	TCGA	6 cut(s)	209, 483, 546, 658, 685, 736
TasI	AATT	8 cut(s)	26, 104, 171, 345, 417, 441, 460, 590
TscAI	CASTG	1 cut(s)	707
TspDTI	ATGAA	2 cut(s)	69, 532
TspRI	CASTG	1 cut(s)	707
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	3 cut(s)	26, 104, 345
XhoI	CTCGAG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	736
XspI	CTAG	2 cut(s)	258, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.