Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006229

Physical Location & Seq

Genomic Coordinates Reverse (-)

6750550 .. 6751850

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAATAAGATCCCCCACAAAAGGCGGAACGATGGAAGTGGAGCCGGTTTTTCGGGTCTGAGCGGAGCGGTCAACGGCAGTTTCGCTTCTGATGGACTGGTGACTCAGATCTCTGGTGTTAGGGGCGGTCTCGGCTCTCTGGTGGTCGTCGGCGCTCTGCGATTGGGGTTCGGCGTACATGAGTTCAATGTTGGTCGGCCTCTGCTCGCCGGCGTCGAAGCCTTCCTTCATCCTCCGGTGCTAGTTTCAGGTCCAGCTCATCTGCGTCGAGAGCAGGAGCCTCTCGGAGGATTCAGGTACGGGTCATGTGGCTTCAAGAGTTGGGTTCATTGGGTCGCTGGCATCCTGTCGTCCTCTGTGGTACAGGATGCTGATGATGACAAGAAATTCGATGAGGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.03

Weight (kDa)

6.96

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72550 AT1G72550
fragaria_vesca	FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020
malus_domestica	MD06G1208000.v1.1 MD14G1218400.v1.1
prunus_persica	Prupe.5G041000_v2.0.a1 Prupe.5G212200_v2.0.a1
pyrus_communis	pycom12g20030
rosa_chinensis	RchiOBHm_Chr7g0184111
rosa_laevigata	RLG00000004999 RLG00000026882 RLG00000028559
rosa_multiflora	Rmu_sc0004712.1_g000004 Rmu_sc0025350.1_g000009
rosa_roxburghii	Rroxscaffold_3G00269870
rosa_rugosa	Rorug06G0463100
rosa_samantha	Rh7AG082700 Rh7BG064300 Rh7CG064900 Rh7DG064500
rosa_wichuraiana	Rw0G002490 Rw7G005290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	63, 68
AciI	CCGC	4 cut(s)	25, 63, 68, 126
AclWI	GGATC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	3 cut(s)	177, 299, 363
AfiI	CCNNNNNNNGG	2 cut(s)	21, 287
AgsI	TTSAA	2 cut(s)	187, 316
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	386
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	251
BccI	CCATC	2 cut(s)	26, 86
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	156
BglII	AGATCT	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	43, 279
BmsI	GCATC	3 cut(s)	351, 358, 388
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 287
Bse118I	RCCGGY	2 cut(s)	44, 209
Bse1I	ACTGG	1 cut(s)	102
BseGI	GGATG	4 cut(s)	229, 342, 373, 403
BseLI	CCNNNNNNNGG	2 cut(s)	21, 287
BseMII	CTCAG	2 cut(s)	50, 119
BseNI	ACTGG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	45, 210, 236
BslI	CCNNNNNNNGG	2 cut(s)	21, 287
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	9, 108
BspACI	CCGC	4 cut(s)	25, 63, 68, 126
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	51, 118
BspLI	GGNNCC	2 cut(s)	43, 279
BspPI	GGATC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	134
BsrBI	CCGCTC	2 cut(s)	63, 68
BsrFI	RCCGGY	2 cut(s)	44, 209
BsrI	ACTGG	1 cut(s)	102
BssAI	RCCGGY	2 cut(s)	44, 209
BssMI	GATC	2 cut(s)	9, 108
BssNI	GRCGYC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	207, 211, 340
BstDEI	CTNAG	2 cut(s)	59, 105
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	4 cut(s)	229, 342, 373, 403
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	12, 111
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	9, 108
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 271
BstX2I	RGATCY	2 cut(s)	9, 108
BstYI	RGATCY	2 cut(s)	9, 108
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	4 cut(s)	229, 342, 373, 403
Cac8I	GCNNGC	3 cut(s)	207, 211, 340
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	44, 209
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	2 cut(s)	202, 254
Csp6I	GTAC	3 cut(s)	176, 298, 362
CviAII	CATG	3 cut(s)	179, 306, 402
CviJI	RGCY	7 cut(s)	44, 135, 199, 221, 257, 280, 312
CviKI_1	RGCY	7 cut(s)	44, 135, 199, 221, 257, 280, 312
CviQI	GTAC	3 cut(s)	176, 298, 362
DdeI	CTNAG	2 cut(s)	59, 105
DpnI	GATC	2 cut(s)	11, 110
DpnII	GATC	2 cut(s)	9, 108
EciI	GGCGGA	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	403
FaeI	CATG	3 cut(s)	182, 309, 405
FaiI	YATR	3 cut(s)	180, 307, 403
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	178, 305, 401
FokI	GGATG	3 cut(s)	216, 329, 380
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	3 cut(s)	45, 210, 236
HgaI	GACGC	2 cut(s)	202, 254
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	182, 309, 405
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	103, 291
HpaII	CCGG	3 cut(s)	45, 210, 236
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	4 cut(s)	60, 91, 108, 287
Hpy188III	TCNNGA	2 cut(s)	269, 316
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	3 cut(s)	152, 218, 270
HpyAV	CCTTC	2 cut(s)	232, 236
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 271
HpyF3I	CTNAG	2 cut(s)	59, 105
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	182, 309, 405
HspAI	GCGC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	9, 108
LmnI	GCTCC	3 cut(s)	41, 65, 277
LweI	GCATC	3 cut(s)	351, 358, 388
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	11, 110
MbiI	CCGCTC	2 cut(s)	63, 68
MboI	GATC	2 cut(s)	9, 108
MflI	RGATCY	2 cut(s)	9, 108
MluCI	AATT	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	6 cut(s)	210, 243, 281, 291, 364, 388
Mph1103I	ATGCAT	1 cut(s)	403
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	209
MspI	CCGG	3 cut(s)	45, 210, 236
MwoI	GCNNNNNNNGC	2 cut(s)	132, 271
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	2 cut(s)	9, 108
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	182, 309, 405
NlaIV	GGNNCC	2 cut(s)	43, 279
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	291
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	43, 279
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	9, 108
RsaI	GTAC	3 cut(s)	177, 299, 363
RsaNI	GTAC	3 cut(s)	176, 298, 362
Sau3AI	GATC	2 cut(s)	9, 108
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	97
SetI	ASST	3 cut(s)	253, 259, 299
SfaNI	GCATC	3 cut(s)	351, 358, 388
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	4 cut(s)	25, 63, 68, 126
SspMI	CTAG	1 cut(s)	242
TaqI	TCGA	3 cut(s)	216, 268, 390
TasI	AATT	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	17, 218, 317
VpaK11BI	GGWCC	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	285
XapI	RAATTY	1 cut(s)	386
XspI	CTAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.