Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006229

Physical Location & Seq

Genomic Coordinates Forward (+)

4687158 .. 4692600

Gene Structure 5443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGATGAAAATGCACGTGAAACCAGAGACATCTTTGATTCGACCTCATGTCGTTTGTGCTGTGTTAAGAGGGATGACTTTCACCGAAGCAAGCTATAACAGCTTTATTGACCTCCAAGACAAGCTCCATCAAAATATCTGCCGGCGACGAACCCTAGTTGCCATTGGAACTCATGACTTGGACACAATTCAAGCTCCTTTCTCATATGAGGCTTTGCCACCCTCAAGCATAAGTTTTGTGCCACTGAAACAGGCGAAGAACTTCAGAGCTGATGAACTCATGGAATTTTACAAATCAGATTTGAAGCTGAAGAAGTTCTTGCATATAATAGAGAACTCCAAGGTTTTTCCTGTTATATATGATAACAACAGGTACAATATTTTTCTTTTCTTGTACATTTATTACTATGATCATTTCTATTTGTCTTTTGTACAGAGGAGTGCATGTATAATTGCCTGTCCATGTAATATAGCTCTATTGATAGGAATTCTTCAATTTGGCAGAACTGTTTTGTCGTTACCTCCAATTATAAATGGTGCTCATTCAGCAATCACTTTAAAGACGAAGAATGTTTTCATAGAATGTACAGCTACTGATTTGACAAAGGCCAAGATTGTTCTGAACACAATAGTGACAGCATTTTCATCATATTGTGAAAGAAAGTTTGAGATTGAACCTGTTGAAGTGTTATATCCTGATGGAAAGTCATATGTGTATCCTGATTTAACAATCTACAACATGGACGTTTCGCTATCATACATTAATCGCAAAATTGGACTATCTTTGGGGGCTGATGAGGTCATTGATTTATTGAATAAGATGCAATTGGGGGCTCAGCAGTCTGTCTCAGGCAATAAGCAGGACGATATCACTGTACTTATACCTCCAACAAGAAGTGACATCCTTCACCCTTGTGATGTCATGGAGGATGTTGCAATTGCATATGGATACAACAATATTCCGCGCACGAAGCCAGCATCTTTGCCTGGATCTTTGAAGCCACTTGTCTTGAATGAGCTTAGCGATGTCCTCAGATCTGAGATTGCAATGAATGGGTATACAGAGGTGTTGAATTTCATATTGTGCTCGTGGCGAGAAAACTTTGACATGTTACGTCGTAGAGATGACAAATCAAAGGCCGTTGTTGTTGGAAATCCTCGCTCATCTGATTTTGAGCTTGTGCGAACCACTCTGATGCCTGGCATATTGAAATCCGTGGGTCACAACAAAGATCACCCAAAGCCCATAAAGGTTTTTGAAGTGGGTGATGTGACTATGTTGGATGAGAAAAAAGATGTTGGTGCAACGAACTGTCGCCAATTAGCAGCATTATACTGTGGGGCTAGCTCTGGATTTGAGTTGATTCATGGGCTGGTGGATAGAATCATGGAAGTACTTGGGGCTGCTTTTGTTCCTAGTCGTGACAATGCAGGCTACTATTTACAACATGCAGAGGAGCCTGAGTTTCTGCCTGGTGTACAAGCAAGCATCTATTATAAAGGGAAGCAAATTGGAAATTTTGGTATTTTGCACCCTGAGGTCTTAAAGAACTTTGATATTCCTGATCCTTGCTCGTATGTGGAAATGAACATCGAGAGTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

B3_4 B5 tRNA-synt_2d

Protein Analysis

535

Amino Acids

60.32

Weight (kDa)

6.25

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B5	PF03484	247 - 317	7.6e-21	tRNA synthetase B5 domain
tRNA_synthFbeta	PF17759	320 - 531	1.5e-47	Phenylalanyl tRNA synthetase beta chain CLM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72550 AT1G72550
fragaria_vesca	FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020 FvH4_5g13020
malus_domestica	MD06G1208000.v1.1 MD14G1218400.v1.1
prunus_persica	Prupe.5G041000_v2.0.a1 Prupe.5G212200_v2.0.a1
pyrus_communis	pycom12g20030
rosa_chinensis	RchiOBHm_Chr7g0184111
rosa_laevigata	RLG00000004999 RLG00000026882 RLG00000028559
rosa_multiflora	Rmu_sc0004712.1_g000004 Rmu_sc0025350.1_g000009
rosa_roxburghii	Rroxscaffold_3G00269870
rosa_rugosa	Rorug06G0463100
rosa_samantha	Rh7AG082700 Rh7BG064300 Rh7CG064900 Rh7DG064500
rosa_wichuraiana	Rw0G002490 Rw7G005290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	530, 1497
AccI	GTMKAC	1 cut(s)	1058
AccII	CGCG	1 cut(s)	964
AciI	CCGC	1 cut(s)	962
AclWI	GGATC	2 cut(s)	997, 1559
AcsI	RAATTY	4 cut(s)	284, 486, 1072, 1516
AcuI	CTGAAG	2 cut(s)	247, 329
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	7 cut(s)	374, 395, 432, 586, 876, 1395, 1479
AflIII	ACRYGT	1 cut(s)	1107
AhdI	GACNNNNNGTC	1 cut(s)	47
AjnI	CCWGG	3 cut(s)	985, 1198, 1471
AleI	CACNNNNGTG	2 cut(s)	629, 912
Alw21I	GWGCWC	2 cut(s)	541, 1088
Alw26I	GTCTC	2 cut(s)	20, 850
AlwI	GGATC	2 cut(s)	997, 1559
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	2 cut(s)	606, 1137
ApeKI	GCWGC	2 cut(s)	1325, 1403
ApoI	RAATTY	4 cut(s)	284, 486, 1072, 1516
AseI	ATTAAT	1 cut(s)	762
Asp700I	GAANNNNTTC	3 cut(s)	260, 314, 572
AspLEI	GCGC	1 cut(s)	966
AsuHPI	GGTGA	4 cut(s)	73, 899, 1226, 1277
AsuNHI	GCTAGC	1 cut(s)	1343
AxyI	CCTNAGG	1 cut(s)	1536
BanII	GRGCYC	1 cut(s)	835
BauI	CACGAG	1 cut(s)	1087
BbrPI	CACGTG	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	541, 1088
BbvI	GCAGC	2 cut(s)	1337, 1390
BccI	CCATC	2 cut(s)	135, 692
BceAI	ACGGC	1 cut(s)	1124
BciT130I	CCWGG	3 cut(s)	987, 1200, 1473
BciVI	GTATCC	2 cut(s)	726, 941
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	20, 850
BfaI	CTAG	3 cut(s)	155, 1344, 1416
BfuI	GTATCC	2 cut(s)	726, 941
BglII	AGATCT	1 cut(s)	1034
BisI	GCNGC	2 cut(s)	1326, 1404
BlpI	GCTNAGC	2 cut(s)	834, 1019
BlsI	GCNGC	2 cut(s)	1327, 1405
BmcAI	AGTACT	1 cut(s)	1395
Bme1390I	CCNGG	3 cut(s)	987, 1200, 1473
BmeRI	GACNNNNNGTC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	1458
BmrFI	CCNGG	3 cut(s)	987, 1200, 1473
BmsI	GCATC	4 cut(s)	810, 986, 1185, 1497
BmtI	GCTAGC	1 cut(s)	1347
Bpu1102I	GCTNAGC	2 cut(s)	834, 1019
BpuEI	CTTGAG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	339, 1215
BsaXI	ACNNNNNCTCC	4 cut(s)	430, 460, 1448, 1478
Bse118I	RCCGGY	1 cut(s)	141
Bse21I	CCTNAGG	1 cut(s)	1536
Bse3DI	GCAATG	1 cut(s)	1053
BseBI	CCWGG	3 cut(s)	987, 1200, 1473
BseDI	CCNNGG	2 cut(s)	339, 1215
BseGI	GGATG	4 cut(s)	78, 900, 934, 1288
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	6 cut(s)	848, 861, 1029, 1045, 1452, 1527
BseRI	GAGGAG	2 cut(s)	451, 1469
BseXI	GCAGC	2 cut(s)	1337, 1390
Bsh1236I	CGCG	1 cut(s)	964
BshFI	GGCC	2 cut(s)	608, 1139
BsiHKAI	GWGCWC	2 cut(s)	541, 1088
BsiSI	CCGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	20, 850
BsnI	GGCC	2 cut(s)	608, 1139
Bsp1286I	GDGCHC	3 cut(s)	541, 835, 1088
Bsp1407I	TGTACA	4 cut(s)	393, 430, 584, 1477
Bsp143I	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
Bsp1720I	GCTNAGC	2 cut(s)	834, 1019
BspACI	CCGC	1 cut(s)	962
BspANI	GGCC	2 cut(s)	608, 1139
BspCNI	CTCAG	6 cut(s)	847, 860, 1030, 1044, 1453, 1528
BspFNI	CGCG	1 cut(s)	964
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	1458
BspOI	GCTAGC	1 cut(s)	1347
BspPI	GGATC	2 cut(s)	997, 1559
BsrDI	GCAATG	1 cut(s)	1053
BsrFI	RCCGGY	1 cut(s)	141
BsrGI	TGTACA	4 cut(s)	393, 430, 584, 1477
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	339, 1215
BssMI	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
BssNAI	GTATAC	1 cut(s)	1059
BssSI	CACGAG	1 cut(s)	1087
BssT1I	CCWWGG	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	1059
Bst2BI	CACGAG	1 cut(s)	1087
Bst2UI	CCWGG	3 cut(s)	987, 1200, 1473
Bst4CI	ACNGT	4 cut(s)	508, 874, 1313, 1337
BstAUI	TGTACA	4 cut(s)	393, 430, 584, 1477
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	6 cut(s)	91, 143, 975, 1345, 1432, 1486
BstDEI	CTNAG	7 cut(s)	834, 847, 1019, 1031, 1038, 1461, 1536
BstDSI	CCRYGG	1 cut(s)	1215
BstF5I	GGATG	4 cut(s)	78, 900, 934, 1288
BstFNI	CGCG	1 cut(s)	964
BstHHI	GCGC	1 cut(s)	966
BstKTI	GATC	5 cut(s)	412, 992, 1037, 1234, 1567
BstMAI	GTCTC	2 cut(s)	20, 850
BstMBI	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 545, 970
BstNI	CCWGG	3 cut(s)	987, 1200, 1473
BstNSI	RCATGY	3 cut(s)	447, 1111, 1451
BstSCI	CCNGG	3 cut(s)	985, 1198, 1471
BstUI	CGCG	1 cut(s)	964
BstV1I	GCAGC	2 cut(s)	1337, 1390
BstX2I	RGATCY	2 cut(s)	989, 1034
BstYI	RGATCY	2 cut(s)	989, 1034
BstZ17I	GTATAC	1 cut(s)	1059
Bsu36I	CCTNAGG	1 cut(s)	1536
BsuI	GTATCC	2 cut(s)	726, 941
BsuRI	GGCC	2 cut(s)	608, 1139
BtgI	CCRYGG	1 cut(s)	1215
BtgZI	GCGATG	1 cut(s)	1038
BtsCI	GGATG	4 cut(s)	78, 900, 934, 1288
BtsIMutI	CAGTG	2 cut(s)	242, 870
Cac8I	GCNNGC	6 cut(s)	91, 143, 975, 1345, 1432, 1486
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	966
Cfr10I	RCCGGY	1 cut(s)	141
Csp6I	GTAC	7 cut(s)	373, 394, 431, 585, 875, 1394, 1478
CspCI	CAANNNNNGTGG	2 cut(s)	990, 1025
CviQI	GTAC	7 cut(s)	373, 394, 431, 585, 875, 1394, 1478
DdeI	CTNAG	7 cut(s)	834, 847, 1019, 1031, 1038, 1461, 1536
DpnI	GATC	5 cut(s)	411, 991, 1036, 1233, 1566
DpnII	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
DraI	TTTAAA	1 cut(s)	558
DriI	GACNNNNNGTC	1 cut(s)	47
Eam1105I	GACNNNNNGTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	835
Eco32I	GATATC	1 cut(s)	868
Eco57I	CTGAAG	2 cut(s)	247, 329
Eco72I	CACGTG	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	1536
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	3 cut(s)	985, 1198, 1471
EcoRV	GATATC	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	339
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FauNDI	CATATG	3 cut(s)	205, 709, 943
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	1058
Fnu4HI	GCNGC	2 cut(s)	1326, 1404
FokI	GGATG	4 cut(s)	85, 887, 941, 1295
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	2 cut(s)	1326, 1404
FspBI	CTAG	3 cut(s)	155, 1344, 1416
GlaI	GCGC	1 cut(s)	965
GluI	GCNGC	2 cut(s)	1326, 1404
HaeIII	GGCC	2 cut(s)	608, 1139
HapII	CCGG	1 cut(s)	142
HhaI	GCGC	1 cut(s)	966
Hin6I	GCGC	1 cut(s)	964
HinP1I	GCGC	1 cut(s)	964
HinfI	GANTC	3 cut(s)	37, 1363, 1383
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	4 cut(s)	73, 899, 1226, 1277
Hpy166II	GTNNAC	2 cut(s)	1059, 1478
Hpy188I	TCNGA	7 cut(s)	266, 298, 621, 1034, 1039, 1168, 1194
Hpy188III	TCNNGA	8 cut(s)	173, 695, 719, 1009, 1350, 1421, 1562, 1594
Hpy8I	GTNNAC	2 cut(s)	1059, 1478
Hpy99I	CGWCG	2 cut(s)	150, 1119
HpyAV	CCTTC	1 cut(s)	914
HpyCH4III	ACNGT	4 cut(s)	508, 874, 1313, 1337
HpyCH4IV	ACGT	3 cut(s)	15, 744, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 545, 970
HpyF3I	CTNAG	7 cut(s)	834, 847, 1019, 1031, 1038, 1461, 1536
HpySE526I	ACGT	3 cut(s)	15, 744, 1114
HspAI	GCGC	1 cut(s)	964
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
LmnI	GCTCC	3 cut(s)	129, 199, 1456
Lsp1109I	GCAGC	2 cut(s)	1337, 1390
LweI	GCATC	4 cut(s)	810, 986, 1185, 1497
MaeI	CTAG	3 cut(s)	155, 1344, 1416
MaeII	ACGT	3 cut(s)	15, 744, 1114
MaeIII	GTNAC	7 cut(s)	516, 631, 896, 1110, 1220, 1270, 1421
MalI	GATC	5 cut(s)	411, 991, 1036, 1233, 1566
MboI	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
MboII	GAAGA	4 cut(s)	268, 322, 482, 577
MfeI	CAATTG	2 cut(s)	824, 936
MflI	RGATCY	2 cut(s)	989, 1034
MhlI	GDGCHC	3 cut(s)	541, 835, 1088
MmeI	TCCRAC	3 cut(s)	911, 1129, 1260
MroNI	GCCGGC	1 cut(s)	141
MroXI	GAANNNNTTC	3 cut(s)	260, 314, 572
MseI	TTAA	5 cut(s)	65, 557, 725, 762, 1544
MslI	CAYNNNNRTG	3 cut(s)	629, 912, 1193
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	987, 1200, 1473
MunI	CAATTG	2 cut(s)	824, 936
MvaI	CCWGG	3 cut(s)	987, 1200, 1473
MvnI	CGCG	1 cut(s)	964
MwoI	GCNNNNNNNGC	3 cut(s)	99, 545, 970
NaeI	GCCGGC	1 cut(s)	143
NdeI	CATATG	3 cut(s)	205, 709, 943
NdeII	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
NgoMIV	GCCGGC	1 cut(s)	141
NheI	GCTAGC	1 cut(s)	1343
NlaIV	GGNNCC	1 cut(s)	1458
NmuCI	GTSAC	5 cut(s)	631, 896, 1220, 1270, 1421
NspI	RCATGY	3 cut(s)	447, 1111, 1451
OliI	CACNNNNGTG	2 cut(s)	629, 912
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	1107
PdiI	GCCGGC	1 cut(s)	143
PdmI	GAANNNNTTC	3 cut(s)	260, 314, 572
PfeI	GAWTC	3 cut(s)	37, 1363, 1383
PkrI	GCNGC	2 cut(s)	1327, 1405
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	16
PscI	ACATGT	1 cut(s)	1107
PshBI	ATTAAT	1 cut(s)	762
PsiI	TTATAA	2 cut(s)	530, 1497
Psp6I	CCWGG	3 cut(s)	985, 1198, 1471
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	3 cut(s)	985, 1198, 1471
PspN4I	GGNNCC	1 cut(s)	1458
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	989, 1034
RsaI	GTAC	7 cut(s)	374, 395, 432, 586, 876, 1395, 1479
RsaNI	GTAC	7 cut(s)	373, 394, 431, 585, 875, 1394, 1478
RseI	CAYNNNNRTG	3 cut(s)	629, 912, 1193
SaqAI	TTAA	5 cut(s)	65, 557, 725, 762, 1544
SatI	GCNGC	2 cut(s)	1326, 1404
Sau3AI	GATC	5 cut(s)	409, 989, 1034, 1231, 1564
ScaI	AGTACT	1 cut(s)	1395
ScrFI	CCNGG	3 cut(s)	987, 1200, 1473
SduI	GDGCHC	3 cut(s)	541, 835, 1088
SfaNI	GCATC	4 cut(s)	810, 986, 1185, 1497
SmiMI	CAYNNNNRTG	3 cut(s)	629, 912, 1193
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SsiI	CCGC	1 cut(s)	962
SspI	AATATT	2 cut(s)	379, 958
SspMI	CTAG	3 cut(s)	155, 1344, 1416
StyD4I	CCNGG	3 cut(s)	985, 1198, 1471
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	4 cut(s)	508, 874, 1313, 1337
TaiI	ACGT	3 cut(s)	18, 747, 1117
TaqI	TCGA	2 cut(s)	40, 1593
TatI	WGTACW	6 cut(s)	393, 430, 584, 874, 1393, 1477
TfiI	GAWTC	3 cut(s)	37, 1363, 1383
Tru1I	TTAA	5 cut(s)	65, 557, 725, 762, 1544
Tru9I	TTAA	5 cut(s)	65, 557, 725, 762, 1544
TscAI	CASTG	2 cut(s)	249, 877
TseFI	GTSAC	5 cut(s)	631, 896, 1220, 1270, 1421
TseI	GCWGC	2 cut(s)	1325, 1403
Tsp45I	GTSAC	5 cut(s)	631, 896, 1220, 1270, 1421
TspDTI	ATGAA	8 cut(s)	20, 288, 565, 633, 1064, 1066, 1355, 1601
TspGWI	ACGGA	1 cut(s)	1204
TspRI	CASTG	2 cut(s)	249, 877
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	4 cut(s)	284, 486, 1072, 1516
XceI	RCATGY	3 cut(s)	447, 1111, 1451
XmiI	GTMKAC	1 cut(s)	1058
XmnI	GAANNNNTTC	3 cut(s)	260, 314, 572
XspI	CTAG	3 cut(s)	155, 1344, 1416
ZrmI	AGTACT	1 cut(s)	1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.