Prupe.5G212900_v2.0.a1

Tetraspanin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013325
Physical Location & Seq
Forward (+)
16840580 .. 16841853
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G212900.1

Sequence Viewer

Length: 831 bp
ATGTTTCGCGTAAGCAACACGGTGATCGGGATCCTGAACTCGCTGTTCCTGCTACTGGGGCTGGCCTCCATCGGGGCGTCGATCTACTTCCACGTCCATGGCGGGACCAACTGCCAGAAAGTTCTCCAAAACCCTCTCCTGATCCTCGGCATCTTCTTCTTCGTGGTCTCTCTCCTGGGGCTACTGGGTTCGTGCTGCCGCCTCAACTCGCTCCTCTACATATACCTGGCCGTGATATTCTTGGTGATCGTGGGGCTCATCGGGTTCACAGTTTTCGCGATATTCGTGACGAACAAGGGGATTGGGCAGGCGGTGTCGGGGAGAGGGTACAAGGAGTATAAGATCGGAGACTTCTCGCATTGGCTGCAGCATTATGTGGTGAACGGGAAGAACTGGGGGCCCATCAAGAGTTGTTTGATCGATGCGCAGGTTTGCAGGAGCCTTGGCAACGATGTTCATCAGACCCAGTCCGACTTTTACAAAAAGAACTTGTCTCCTATACAGTCTGGTTGTTGCAAGCCCCCGTCCTACTGCGGTTACGAGTTCAAGAATGCAACGTTCTGGGTGGTGCCGAAATCGGGACCGGAAGTGGAAGACAGTGACTGCAAGACATGGAGCAATGAGCAGAAGGTGTTATGCTACGATTGCCAGTCATGCAAGGGAGGAGTGCTGGCCAACATTAGGAAGGAGTGGAGGCGTTTGGCTCTTTTCAACACTTGTCTACTTGTCCTCGTCACCCTCGTCTACTGCGTTGGCTGCTGTGCTTCCAAGAACAACCGCTTCTCTACTTATAACGTCTACAACAAATATAGAGGCAGAGGCGGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

277

Amino Acids

30.7

Weight (kDa)

9.14

Isoelectric Point (pI)

26.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18520
fragaria_vesca FvH4_5g12970
malus_domestica MD06G1208400.v1.1
prunus_persica Prupe.5G212900_v2.0.a1
pyrus_communis pycom06g18620
rosa_chinensis RchiOBHm_Chr7g0184191
rosa_laevigata RLG00000004995
rosa_multiflora Rmu_co8233853.1_g000001 Rmu_co8323147.1_g000001 Rmu_sc0012221.1_g000007 Rmu_sc0013812.1_g000001
rosa_roxburghii Rroxscaffold_3G00269810
rosa_rugosa Rorug06G0463800
rosa_samantha Rh7AG082100 Rh7BG065100 Rh7CG065500 Rh7DG065200
rosa_wichuraiana Rw7G005340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
Acc16I TGCGCA 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 568
AccI GTMKAC 3 cut(s) 721, 744, 798
AccII CGCG 2 cut(s) 9, 278
AciI CCGC 6 cut(s) 102, 199, 311, 534, 778, 822
AclI AACGTT 1 cut(s) 557
AclWI GGATC 3 cut(s) 25, 38, 136
AcoI YGGCCR 2 cut(s) 228, 672
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 4 cut(s) 55, 72, 578, 681
AgsI TTSAA 2 cut(s) 547, 712
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 2 cut(s) 174, 225
Alw26I GTCTC 3 cut(s) 172, 342, 498
AlwI GGATC 3 cut(s) 25, 38, 136
AlwNI CAGNNNCTG 1 cut(s) 603
AoxI GGCC 5 cut(s) 63, 228, 398, 672, 823
ApaI GGGCCC 1 cut(s) 402
ApeKI GCWGC 4 cut(s) 195, 364, 367, 756
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 5 cut(s) 105, 398, 399, 581, 824
AsuHPI GGTGA 4 cut(s) 34, 256, 391, 727
AvaII GGWCC 2 cut(s) 105, 581
BaeGI GKGCMC 1 cut(s) 402
BalI TGGCCA 1 cut(s) 674
BamHI GGATCC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 568
BanII GRGCYC 2 cut(s) 258, 402
BbsI GAAGAC 1 cut(s) 600
BbvI GCAGC 4 cut(s) 182, 351, 379, 743
BccI CCATC 2 cut(s) 77, 410
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 2 cut(s) 176, 227
BcoDI GTCTC 3 cut(s) 172, 342, 498
BfmI CTRYAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 418
BisI GCNGC 6 cut(s) 196, 199, 365, 368, 757, 823
BlsI GCNGC 6 cut(s) 197, 200, 366, 369, 758, 824
Bme1390I CCNGG 2 cut(s) 176, 227
Bme18I GGWCC 2 cut(s) 105, 581
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 5 cut(s) 105, 398, 399, 581, 824
BmiI GGNNCC 7 cut(s) 32, 106, 399, 400, 440, 570, 582
BmrFI CCNGG 2 cut(s) 176, 227
BmrI ACTGGG 4 cut(s) 65, 194, 403, 460
BmsI GCATC 2 cut(s) 159, 412
BmuI ACTGGG 4 cut(s) 65, 194, 403, 460
BpiI GAAGAC 1 cut(s) 600
Bsa29I ATCGAT 1 cut(s) 420
BsaBI GATNNNNATC 2 cut(s) 29, 456
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 4 cut(s) 97, 145, 175, 442
BsaWI WCCGGW 1 cut(s) 583
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 72, 578, 681
Bse1I ACTGG 5 cut(s) 60, 189, 398, 466, 649
Bse3DI GCAATG 1 cut(s) 625
Bse8I GATNNNNATC 2 cut(s) 29, 456
BseBI CCWGG 2 cut(s) 176, 227
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 97, 145, 175, 442
BseJI GATNNNNATC 2 cut(s) 29, 456
BseLI CCNNNNNNNGG 4 cut(s) 55, 72, 578, 681
BseMI GCAATG 1 cut(s) 625
BseNI ACTGG 5 cut(s) 60, 189, 398, 466, 649
BseRI GAGGAG 2 cut(s) 203, 678
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 4 cut(s) 182, 351, 379, 743
Bsh1236I CGCG 2 cut(s) 9, 278
BshFI GGCC 5 cut(s) 65, 230, 400, 674, 825
BshNI GGYRCC 1 cut(s) 568
BshVI ATCGAT 1 cut(s) 420
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 2 cut(s) 118, 594
BslI CCNNNNNNNGG 4 cut(s) 55, 72, 578, 681
BsmAI GTCTC 3 cut(s) 172, 342, 498
BsmFI GGGAC 2 cut(s) 118, 594
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 5 cut(s) 65, 230, 400, 674, 825
Bso31I GGTCTC 1 cut(s) 172
Bsp120I GGGCCC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 258, 402
Bsp143I GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
Bsp19I CCATGG 1 cut(s) 97
Bsp68I TCGCGA 1 cut(s) 278
BspACI CCGC 6 cut(s) 102, 199, 311, 534, 778, 822
BspANI GGCC 5 cut(s) 65, 230, 400, 674, 825
BspDI ATCGAT 1 cut(s) 420
BspFNI CGCG 2 cut(s) 9, 278
BspLI GGNNCC 7 cut(s) 32, 106, 399, 400, 440, 570, 582
BspMAI CTGCAG 1 cut(s) 369
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 3 cut(s) 25, 38, 136
BspT107I GGYRCC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 625
BsrI ACTGG 5 cut(s) 60, 189, 398, 466, 649
BssECI CCNNGG 4 cut(s) 97, 145, 175, 442
BssMI GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 97, 442
Bst2UI CCWGG 2 cut(s) 176, 227
Bst4CI ACNGT 4 cut(s) 22, 271, 504, 599
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 364
BstC8I GCNNGC 4 cut(s) 63, 309, 518, 672
BstDSI CCRYGG 1 cut(s) 97
BstFNI CGCG 2 cut(s) 9, 278
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 7 cut(s) 27, 33, 84, 144, 249, 345, 420
BstMAI GTCTC 3 cut(s) 172, 342, 498
BstMBI GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
BstMWI GCNNNNNNNGC 7 cut(s) 49, 58, 364, 645, 654, 756, 822
BstNI CCWGG 2 cut(s) 176, 227
BstSCI CCNGG 2 cut(s) 174, 225
BstSFI CTRYAG 1 cut(s) 365
BstSLI GKGCMC 1 cut(s) 402
BstUI CGCG 2 cut(s) 9, 278
BstV1I GCAGC 4 cut(s) 182, 351, 379, 743
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 5 cut(s) 65, 230, 400, 674, 825
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 604
BtuMI TCGCGA 1 cut(s) 278
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 4 cut(s) 63, 309, 518, 672
CaiI CAGNNNCTG 1 cut(s) 603
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 5 cut(s) 105, 398, 399, 581, 824
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 98, 612, 654
CviQI GTAC 1 cut(s) 328
DpnI GATC 7 cut(s) 26, 32, 83, 143, 248, 344, 419
DpnII GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
EaeI YGGCCR 2 cut(s) 228, 672
Eco130I CCWWGG 2 cut(s) 97, 442
Eco24I GRGCYC 2 cut(s) 258, 402
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 105, 581
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 174, 225
EcoT14I CCWWGG 2 cut(s) 97, 442
EcoT38I GRGCYC 2 cut(s) 258, 402
ErhI CCWWGG 2 cut(s) 97, 442
FaeI CATG 3 cut(s) 101, 615, 657
FaqI GGGAC 2 cut(s) 118, 594
FatI CATG 3 cut(s) 97, 611, 653
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 3 cut(s) 721, 744, 798
Fnu4HI GCNGC 6 cut(s) 196, 199, 365, 368, 757, 823
FriOI GRGCYC 2 cut(s) 258, 402
Fsp4HI GCNGC 6 cut(s) 196, 199, 365, 368, 757, 823
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 1 cut(s) 426
GluI GCNGC 6 cut(s) 196, 199, 365, 368, 757, 823
HaeIII GGCC 5 cut(s) 65, 230, 400, 674, 825
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 66
HhaI GCGC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 3 cut(s) 101, 615, 657
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HpaII CCGG 1 cut(s) 584
HphI GGTGA 4 cut(s) 34, 256, 391, 727
Hpy166II GTNNAC 5 cut(s) 267, 382, 722, 745, 799
Hpy188I TCNGA 3 cut(s) 347, 462, 472
Hpy188III TCNNGA 8 cut(s) 28, 34, 139, 277, 286, 406, 547, 579
Hpy8I GTNNAC 5 cut(s) 267, 382, 722, 745, 799
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 622, 679
HpyCH4III ACNGT 4 cut(s) 22, 271, 504, 599
HpyCH4IV ACGT 3 cut(s) 93, 557, 795
HpyCH4V TGCA 6 cut(s) 367, 435, 516, 554, 606, 657
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 58, 364, 645, 654, 756, 822
HpySE526I ACGT 3 cut(s) 93, 557, 795
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 3 cut(s) 101, 615, 657
HspAI GCGC 1 cut(s) 425
Kzo9I GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
LmnI GCTCC 3 cut(s) 216, 438, 615
Lsp1109I GCAGC 4 cut(s) 182, 351, 379, 743
LweI GCATC 2 cut(s) 159, 412
MaeII ACGT 3 cut(s) 93, 557, 795
MaeIII GTNAC 4 cut(s) 286, 536, 599, 733
MalI GATC 7 cut(s) 26, 32, 83, 143, 248, 344, 419
MboI GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
MboII GAAGA 5 cut(s) 145, 148, 151, 400, 605
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 258, 402
MlsI TGGCCA 1 cut(s) 674
MluNI TGGCCA 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 495
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 674
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 2 cut(s) 176, 227
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 2 cut(s) 176, 227
MvnI CGCG 2 cut(s) 9, 278
MwoI GCNNNNNNNGC 7 cut(s) 49, 58, 364, 645, 654, 756, 822
NcoI CCATGG 1 cut(s) 97
NdeII GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
NlaIII CATG 3 cut(s) 101, 615, 657
NlaIV GGNNCC 7 cut(s) 32, 106, 399, 400, 440, 570, 582
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 3 cut(s) 286, 599, 733
NruI TCGCGA 1 cut(s) 278
NsbI TGCGCA 1 cut(s) 426
PcsI WCGNNNNNNNCGW 3 cut(s) 282, 738, 747
PctI GAATGC 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 466
PkrI GCNGC 6 cut(s) 197, 200, 366, 369, 758, 824
PsiI TTATAA 1 cut(s) 792
Psp1406I AACGTT 1 cut(s) 557
Psp6I CCWGG 2 cut(s) 174, 225
PspGI CCWGG 2 cut(s) 174, 225
PspN4I GGNNCC 7 cut(s) 32, 106, 399, 400, 440, 570, 582
PspOMI GGGCCC 1 cut(s) 398
PspPI GGNCC 5 cut(s) 105, 398, 399, 581, 824
PstI CTGCAG 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 603
PsuI RGATCY 1 cut(s) 30
PsyI GACNNNGTC 1 cut(s) 466
RruI TCGCGA 1 cut(s) 278
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 96
SatI GCNGC 6 cut(s) 196, 199, 365, 368, 757, 823
Sau3AI GATC 7 cut(s) 24, 30, 81, 141, 246, 342, 417
Sau96I GGNCC 5 cut(s) 105, 398, 399, 581, 824
ScrFI CCNGG 2 cut(s) 176, 227
SduI GDGCHC 2 cut(s) 258, 402
SetI ASST 6 cut(s) 96, 228, 432, 560, 633, 798
SfaNI GCATC 2 cut(s) 159, 412
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 2 cut(s) 105, 581
SmiMI CAYNNNNRTG 1 cut(s) 96
SsiI CCGC 6 cut(s) 102, 199, 311, 534, 778, 822
StyD4I CCNGG 2 cut(s) 174, 225
StyI CCWWGG 2 cut(s) 97, 442
TaaI ACNGT 4 cut(s) 22, 271, 504, 599
TaiI ACGT 3 cut(s) 96, 560, 798
TaqI TCGA 2 cut(s) 80, 420
TauI GCSGC 2 cut(s) 201, 825
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 3 cut(s) 286, 599, 733
TseI GCWGC 4 cut(s) 195, 364, 367, 756
Tsp45I GTSAC 3 cut(s) 286, 599, 733
TspDTI ATGAA 1 cut(s) 446
TspRI CASTG 1 cut(s) 604
Tth111I GACNNNGTC 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 105, 581
XmiI GTMKAC 3 cut(s) 721, 744, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.