Rmu_co8323147.1_g000001

Tetraspanin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8323147.1
OG0013325
Physical Location & Seq
Forward (+)
393 .. 929
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8323147.1_g000001.1.cds

Sequence Viewer

Length: 537 bp
atgttacgcataagcaacaccgtgatcgggatcctcaatgcgatgttcctcctcctgggactcgcctccatcggcgcgtcgatctacttccacctccacggcggcacagtctgccagaaggtcctccagaaccctctcctcttcgccggactcttcttcgttgtcgtgtccgtcctcggcctcgccggatcgtgctgccgactcaactctctcctctacacctacctcgtcttaatctttctcctcatcctcggactcatcgcgttcaccgtgttcgcgcttttcgtgaccaacaaggggatcggacaggccgtgtcgggacgagggtacaaggagtacaaggttggagacttctcgcattggctccagcattacgttgttaatgggaagaactgggagccgatcaagagttgtctcattgatgctcaggtttgccagagtctcggcggcgatgttcatcagaccaagtccgatttttacaagaagaacttgtctccgattcaggtatgtgggttttttacatttttaatttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

178

Amino Acids

19.64

Weight (kDa)

9.07

Isoelectric Point (pI)

23.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18520
fragaria_vesca FvH4_5g12970
malus_domestica MD06G1208400.v1.1
prunus_persica Prupe.5G212900_v2.0.a1
pyrus_communis pycom06g18620
rosa_chinensis RchiOBHm_Chr7g0184191
rosa_laevigata RLG00000004995
rosa_multiflora Rmu_co8233853.1_g000001 Rmu_co8323147.1_g000001 Rmu_sc0012221.1_g000007 Rmu_sc0013812.1_g000001
rosa_roxburghii Rroxscaffold_3G00269810
rosa_rugosa Rorug06G0463800
rosa_samantha Rh7AG082100 Rh7BG065100 Rh7CG065500 Rh7DG065200
rosa_wichuraiana Rw7G005340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 77, 263, 278
AciI CCGC 2 cut(s) 102, 447
AclWI GGATC 4 cut(s) 25, 38, 196, 308
AfaI GTAC 2 cut(s) 329, 338
AfiI CCNNNNNNNGG 3 cut(s) 27, 55, 297
AjnI CCWGG 1 cut(s) 54
Alw26I GTCTC 4 cut(s) 342, 419, 446, 498
AlwI GGATC 4 cut(s) 25, 38, 196, 308
AoxI GGCC 2 cut(s) 178, 309
ApeKI GCWGC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 77, 280
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 121
BamHI GGATCC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 77
BceAI ACGGC 2 cut(s) 115, 296
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 4 cut(s) 342, 419, 446, 498
BisI GCNGC 3 cut(s) 103, 196, 448
BlsI GCNGC 3 cut(s) 104, 197, 449
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 3 cut(s) 32, 365, 399
BmrFI CCNGG 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 403
BpmI CTGGAG 2 cut(s) 110, 350
Bpu10I CCTNAGC 1 cut(s) 426
BsaBI GATNNNNATC 2 cut(s) 29, 456
BsaJI CCNNGG 4 cut(s) 55, 97, 175, 250
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 55, 297
Bse1I ACTGG 1 cut(s) 398
Bse8I GATNNNNATC 2 cut(s) 29, 456
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 4 cut(s) 55, 97, 175, 250
BseGI GGATG 1 cut(s) 246
BseJI GATNNNNATC 2 cut(s) 29, 456
BseLI CCNNNNNNNGG 3 cut(s) 27, 55, 297
BseMII CTCAG 1 cut(s) 440
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 4 cut(s) 41, 128, 203, 233
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 3 cut(s) 77, 263, 278
BshFI GGCC 2 cut(s) 180, 311
BsiSI CCGG 2 cut(s) 147, 186
BslFI GGGAC 2 cut(s) 72, 333
BslI CCNNNNNNNGG 3 cut(s) 27, 55, 297
BsmAI GTCTC 4 cut(s) 342, 419, 446, 498
BsmFI GGGAC 2 cut(s) 72, 333
BsnI GGCC 2 cut(s) 180, 311
Bsp143I GATC 6 cut(s) 24, 30, 81, 188, 300, 402
BspACI CCGC 2 cut(s) 102, 447
BspANI GGCC 2 cut(s) 180, 311
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 3 cut(s) 77, 263, 278
BspLI GGNNCC 3 cut(s) 32, 365, 399
BspPI GGATC 4 cut(s) 25, 38, 196, 308
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 55, 97, 175, 250
BssMI GATC 6 cut(s) 24, 30, 81, 188, 300, 402
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 3 cut(s) 22, 109, 271
Bst6I CTCTTC 2 cut(s) 146, 158
BstAPI GCANNNNNTGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 3 cut(s) 77, 263, 278
BstHHI GCGC 2 cut(s) 77, 280
BstKTI GATC 6 cut(s) 27, 33, 84, 191, 303, 405
BstMAI GTCTC 4 cut(s) 342, 419, 446, 498
BstMBI GATC 6 cut(s) 24, 30, 81, 188, 300, 402
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstUI CGCG 3 cut(s) 77, 263, 278
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 2 cut(s) 180, 311
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 3 cut(s) 56, 244, 465
BtsCI GGATG 1 cut(s) 246
CfoI GCGC 2 cut(s) 77, 280
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 328, 337
CviJI RGCY 4 cut(s) 180, 311, 364, 400
CviKI_1 RGCY 4 cut(s) 180, 311, 364, 400
CviQI GTAC 2 cut(s) 328, 337
DdeI CTNAG 1 cut(s) 426
DpnI GATC 6 cut(s) 26, 32, 83, 190, 302, 404
DpnII GATC 6 cut(s) 24, 30, 81, 188, 300, 402
Eam1104I CTCTTC 2 cut(s) 146, 158
EarI CTCTTC 2 cut(s) 146, 158
Eco47I GGWCC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 54
FaiI YATR 2 cut(s) 11, 508
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 2 cut(s) 72, 333
Fnu4HI GCNGC 3 cut(s) 103, 196, 448
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 103, 196, 448
GlaI GCGC 2 cut(s) 76, 279
GluI GCNGC 3 cut(s) 103, 196, 448
GsuI CTGGAG 2 cut(s) 110, 350
HaeIII GGCC 2 cut(s) 180, 311
HapII CCGG 2 cut(s) 147, 186
HgaI GACGC 1 cut(s) 66
HhaI GCGC 2 cut(s) 77, 280
Hin6I GCGC 2 cut(s) 75, 278
HinP1I GCGC 2 cut(s) 75, 278
HinfI GANTC 6 cut(s) 60, 150, 201, 255, 439, 499
HpaII CCGG 2 cut(s) 147, 186
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 5 cut(s) 254, 305, 462, 472, 498
Hpy188III TCNNGA 5 cut(s) 28, 127, 286, 318, 406
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 3 cut(s) 22, 109, 271
HpyCH4IV ACGT 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 1 cut(s) 375
HspAI GCGC 2 cut(s) 75, 278
Kzo9I GATC 6 cut(s) 24, 30, 81, 188, 300, 402
LmnI GCTCC 2 cut(s) 369, 397
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 412
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 3, 286
MalI GATC 6 cut(s) 26, 32, 83, 190, 302, 404
MboI GATC 6 cut(s) 24, 30, 81, 188, 300, 402
MboII GAAGA 5 cut(s) 133, 145, 148, 400, 496
MflI RGATCY 1 cut(s) 30
MluCI AATT 1 cut(s) 528
MlyI GAGTC 5 cut(s) 54, 144, 195, 249, 448
MmeI TCCRAC 1 cut(s) 325
MseI TTAA 3 cut(s) 233, 381, 527
MspI CCGG 2 cut(s) 147, 186
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 3 cut(s) 77, 263, 278
MwoI GCNNNNNNNGC 1 cut(s) 111
NdeII GATC 6 cut(s) 24, 30, 81, 188, 300, 402
NlaIV GGNNCC 3 cut(s) 32, 365, 399
NmeAIII GCCGAG 2 cut(s) 156, 423
NmuCI GTSAC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 3 cut(s) 267, 282, 309
PfeI GAWTC 1 cut(s) 499
PflFI GACNNNGTC 1 cut(s) 466
PkrI GCNGC 3 cut(s) 104, 197, 449
PleI GAGTC 5 cut(s) 54, 144, 195, 249, 447
PpsI GAGTC 5 cut(s) 54, 144, 195, 249, 447
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 32, 365, 399
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 30
PsyI GACNNNGTC 1 cut(s) 466
RsaI GTAC 2 cut(s) 329, 338
RsaNI GTAC 2 cut(s) 328, 337
SaqAI TTAA 3 cut(s) 233, 381, 527
SatI GCNGC 3 cut(s) 103, 196, 448
Sau3AI GATC 6 cut(s) 24, 30, 81, 188, 300, 402
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 5 cut(s) 54, 144, 195, 249, 448
ScrFI CCNGG 1 cut(s) 56
SetI ASST 8 cut(s) 96, 123, 224, 228, 345, 378, 432, 507
SfaNI GCATC 1 cut(s) 412
SinI GGWCC 1 cut(s) 121
Sse9I AATT 1 cut(s) 528
SsiI CCGC 2 cut(s) 102, 447
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 3 cut(s) 22, 109, 271
TaiI ACGT 1 cut(s) 378
TaqI TCGA 1 cut(s) 80
TasI AATT 1 cut(s) 528
TatI WGTACW 1 cut(s) 336
TauI GCSGC 2 cut(s) 105, 450
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 3 cut(s) 233, 381, 527
Tru9I TTAA 3 cut(s) 233, 381, 527
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.