Rmu_co8233853.1_g000001

Tetraspanin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8233853.1
OG0013325
Physical Location & Seq
Reverse (-)
2 .. 325
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8233853.1_g000001.1.cds

Sequence Viewer

Length: 324 bp
atggaacagtccggttgctgcaagccaccatcctactgcggatatgaattcaagaatgcaacatattgggttgttccaaagtcgggacctaaagagccggacagtgattgcatgacttggagcaacaaacagaacaagttgtgttatgactgcaagtcatgcaaaggaggaatgctggcgaacattcgcaaagagtggaggtctctggccatactcaactgctgtattctcgttctccttaccctcgtctactgcgttggttgctgtgcgaccaagaacaatcgcttcagtacttacaattacaacaagtacagaggaggcgct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

108

Amino Acids

12.23

Weight (kDa)

8.93

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18520
fragaria_vesca FvH4_5g12970
malus_domestica MD06G1208400.v1.1
prunus_persica Prupe.5G212900_v2.0.a1
pyrus_communis pycom06g18620
rosa_chinensis RchiOBHm_Chr7g0184191
rosa_laevigata RLG00000004995
rosa_multiflora Rmu_co8233853.1_g000001 Rmu_co8323147.1_g000001 Rmu_sc0012221.1_g000007 Rmu_sc0013812.1_g000001
rosa_roxburghii Rroxscaffold_3G00269810
rosa_rugosa Rorug06G0463800
rosa_samantha Rh7AG082100 Rh7BG065100 Rh7CG065500 Rh7DG065200
rosa_wichuraiana Rw7G005340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 2 cut(s) 292, 311
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 52
AhdI GACNNNNNGTC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 47
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 209
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 324
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmcAI AGTACT 1 cut(s) 292
Bme18I GGWCC 1 cut(s) 86
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 12, 98
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 2 cut(s) 61, 177
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 207
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 9, 104
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 23, 177
BstF5I GGATG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 159, 261
BstV1I GCAGC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 23, 177
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 291, 310
CviAII CATG 2 cut(s) 112, 159
CviJI RGCY 3 cut(s) 25, 97, 209
CviKI_1 RGCY 3 cut(s) 25, 97, 209
CviQI GTAC 2 cut(s) 291, 310
DriI GACNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 47
FaeI CATG 2 cut(s) 115, 162
FaiI YATR 6 cut(s) 45, 64, 113, 147, 160, 212
FaqI GGGAC 1 cut(s) 99
FatI CATG 2 cut(s) 111, 158
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 19
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 12, 98
HhaI GCGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 115, 162
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HpaII CCGG 2 cut(s) 12, 98
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 52, 84
Hpy8I GTNNAC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 9, 104
HpyCH4V TGCA 5 cut(s) 21, 59, 111, 153, 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 261
Hsp92II CATG 2 cut(s) 115, 162
HspAI GCGC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 25, 111, 161, 191
Lsp1109I GCAGC 1 cut(s) 5
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 47, 298
MluNI TGGCCA 1 cut(s) 209
MnlI CCTC 5 cut(s) 161, 192, 254, 308, 311
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 2 cut(s) 12, 98
Mva1269I GAATGC 2 cut(s) 61, 177
MwoI GCNNNNNNNGC 2 cut(s) 159, 261
NlaIII CATG 2 cut(s) 115, 162
NlaIV GGNNCC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 2 cut(s) 61, 177
PkrI GCNGC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
RsaI GTAC 2 cut(s) 292, 311
RsaNI GTAC 2 cut(s) 291, 310
SatI GCNGC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 292
SetI ASST 2 cut(s) 91, 203
SinI GGWCC 1 cut(s) 86
Sse9I AATT 2 cut(s) 47, 298
SsiI CCGC 1 cut(s) 39
TaaI ACNGT 2 cut(s) 9, 104
TasI AATT 2 cut(s) 47, 298
TatI WGTACW 2 cut(s) 290, 309
TscAI CASTG 1 cut(s) 109
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.