Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013530

Physical Location & Seq

Genomic Coordinates Forward (+)

19633629 .. 19635290

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G188000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTGGGCGCAATCTCCATAGCTCCATCTTCAACGGTTACATTCCCGGCAAGGCTGCTCTCGCCAATCCCCAAGTCCTCGTTCAATGGCCTGCGATTCCAACGCGCTTGCCCGAACACTGTCGTTCGTCTCCCAACGGCGTCGTTTCGGAGGCCTTGCTCGTCGTCTTCGGTGGTGATGATGGCCAAGAGAGAAGAAGAGATGAAGGAAATCAGAACCAAAACCACCGAAGAAATCAACGAGGAGGTGGTTGAGCTCAAAGGTGAGCTCTTCATGCTTCGCCTCCAGAAATCGGCTCGCAACGAGTTCACATCCAGCGAGTTCCGTCGAATGCGCAAAAGGATTGCTCGCTTGCTCACTGTTAAACGAGAAAGAGAGATTGAGGAGGGAATCGGTAAGAGGTTGTCAAGGAAGTTCGATCGACAATGGAAGAGGAGCATTGTTGTCAGACCACCTCCGTCATTGATTAAGTTGCAAGAGGAAGAAGCAGCTGCAGAAGCAGCTGAGAAGGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009295 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

173

Amino Acids

19.69

Weight (kDa)

10.43

Isoelectric Point (pI)

78.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65220
fragaria_vesca	FvH4_1g20710
malus_domestica	MD00G1199600.v1.1 MD01G1031300.v1.1
prunus_persica	Prupe.6G188000_v2.0.a1
pyrus_communis	pycom01g05890
rosa_chinensis	RchiOBHm_Chr2g0113161
rosa_laevigata	RLG00000018048
rosa_multiflora	Rmu_sc0006838.1_g000024 Rmu_sc0035384.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129560 Rroxscaffold_2G00129750
rosa_rugosa	Rorug02G0185900
rosa_samantha	Rh2AG240200 Rh2BG254100 Rh2CG244200 Rh2DG248100
rosa_wichuraiana	Rw2G018800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	335
AccII	CGCG	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	33, 85
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	23, 256, 268, 491, 503
AluI	AGCT	5 cut(s)	23, 256, 268, 491, 503
Alw21I	GWGCWC	2 cut(s)	258, 270
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	3 cut(s)	88, 152, 183
ApeKI	GCWGC	5 cut(s)	55, 488, 491, 500, 512
AspLEI	GCGC	3 cut(s)	11, 107, 336
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	187, 275
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	258, 270
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	258, 270
BbvI	GCAGC	5 cut(s)	42, 478, 499, 500, 512
BccI	CCATC	2 cut(s)	34, 175
BceAI	ACGGC	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	5 cut(s)	56, 489, 492, 501, 513
BlsI	GCNGC	5 cut(s)	57, 490, 493, 502, 514
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	495
BseRI	GAGGAG	3 cut(s)	257, 398, 448
BseXI	GCAGC	5 cut(s)	42, 478, 499, 500, 512
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	90, 154, 185
BsiEI	CGRYCG	1 cut(s)	421
BsiHKAI	GWGCWC	2 cut(s)	258, 270
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	3 cut(s)	90, 154, 185
Bsp1286I	GDGCHC	2 cut(s)	258, 270
Bsp143I	GATC	1 cut(s)	418
BspANI	GGCC	3 cut(s)	90, 154, 185
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	496
BspQI	GCTCTTC	1 cut(s)	275
BssMI	GATC	1 cut(s)	418
BssNI	GRCGYC	1 cut(s)	140
Bst4CI	ACNGT	3 cut(s)	37, 121, 361
Bst6I	CTCTTC	3 cut(s)	192, 275, 425
BstACI	GRCGYC	1 cut(s)	140
BstC8I	GCNNGC	5 cut(s)	92, 109, 298, 349, 353
BstDEI	CTNAG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	3 cut(s)	11, 107, 336
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	418
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 274, 497, 500, 509
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	5 cut(s)	42, 478, 499, 500, 512
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	90, 154, 185
BtsCI	GGATG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	117, 357
Cac8I	GCNNGC	5 cut(s)	92, 109, 298, 349, 353
CfoI	GCGC	3 cut(s)	11, 107, 336
CseI	GACGC	1 cut(s)	129
CviAII	CATG	2 cut(s)	274, 516
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	192, 275, 425
EarI	CTCTTC	3 cut(s)	192, 275, 425
Ecl136II	GAGCTC	2 cut(s)	256, 268
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	258, 270
Eco53kI	GAGCTC	2 cut(s)	256, 268
EcoICRI	GAGCTC	2 cut(s)	256, 268
EcoT38I	GRGCYC	2 cut(s)	258, 270
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	2 cut(s)	277, 519
FaiI	YATR	3 cut(s)	20, 275, 517
FatI	CATG	2 cut(s)	273, 515
Fnu4HI	GCNGC	5 cut(s)	56, 489, 492, 501, 513
FokI	GGATG	1 cut(s)	298
FriOI	GRGCYC	2 cut(s)	258, 270
Fsp4HI	GCNGC	5 cut(s)	56, 489, 492, 501, 513
FspI	TGCGCA	1 cut(s)	335
GlaI	GCGC	3 cut(s)	10, 106, 335
GluI	GCNGC	5 cut(s)	56, 489, 492, 501, 513
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	90, 154, 185
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	3 cut(s)	11, 107, 336
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	277, 519
Hin6I	GCGC	3 cut(s)	9, 105, 334
HinP1I	GCGC	3 cut(s)	9, 105, 334
HinfI	GANTC	2 cut(s)	96, 390
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	187, 275
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	3 cut(s)	150, 215, 449
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	3 cut(s)	145, 166, 330
HpyAV	CCTTC	2 cut(s)	199, 502
HpyCH4III	ACNGT	3 cut(s)	37, 121, 361
HpyCH4V	TGCA	3 cut(s)	475, 494, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 274, 497, 500, 509
HpyF3I	CTNAG	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	277, 519
HspAI	GCGC	3 cut(s)	9, 105, 334
Kzo9I	GATC	1 cut(s)	418
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	28, 435
LpnPI	CCDG	4 cut(s)	60, 104, 299, 328
Lsp1109I	GCAGC	5 cut(s)	42, 478, 499, 500, 512
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	8 cut(s)	21, 159, 206, 209, 242, 262, 442, 494
MhlI	GDGCHC	2 cut(s)	258, 270
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	2 cut(s)	363, 468
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	491, 503
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	336
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	5 cut(s)	61, 274, 497, 500, 509
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	277, 519
NsbI	TGCGCA	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	275
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	96, 390
PkrI	GCNGC	5 cut(s)	57, 490, 493, 502, 514
Ple19I	CGATCG	1 cut(s)	421
Psp124BI	GAGCTC	2 cut(s)	258, 270
PstI	CTGCAG	1 cut(s)	496
PvuI	CGATCG	1 cut(s)	421
PvuII	CAGCTG	2 cut(s)	491, 503
SacI	GAGCTC	2 cut(s)	258, 270
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	363, 468
SatI	GCNGC	5 cut(s)	56, 489, 492, 501, 513
Sau3AI	GATC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	258, 270
SetI	ASST	9 cut(s)	25, 249, 258, 265, 270, 404, 457, 493, 505
SfcI	CTRYAG	1 cut(s)	492
SseBI	AGGCCT	1 cut(s)	154
SstI	GAGCTC	2 cut(s)	258, 270
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	37, 121, 361
TaqI	TCGA	3 cut(s)	328, 417, 421
TfiI	GAWTC	2 cut(s)	96, 390
Tru1I	TTAA	2 cut(s)	363, 468
Tru9I	TTAA	2 cut(s)	363, 468
TscAI	CASTG	2 cut(s)	124, 364
TseI	GCWGC	5 cut(s)	55, 488, 491, 500, 512
TspDTI	ATGAA	2 cut(s)	218, 262
TspGWI	ACGGA	2 cut(s)	314, 447
TspRI	CASTG	2 cut(s)	124, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.