Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006838.1

Orthogroup ID

OG0013530

Physical Location & Seq

Genomic Coordinates Forward (+)

86141 .. 86557

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006838.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgttgggcgcaatctccatagctccaccttccacggttgccttacccccaaagctcctctcccccatccccaagtcctccttcaacggcctcagactccaacacgtctgccccgtcggcattcgcctccccacggcgtcgtttcggaggtccagctcgccgtcttcctccgtggttatgatggccaagagagaggaagagatgaaggaaatcagaaccaagaccaccgaagaaatcaacgaggaggtggtcgaccttaaaggagagctcttcatgcttcgcctccagaaatcggctcggaatgagttcacatccagcgagttccggcgtatgcgcaaaagggtatttcattttcaaatagcttatcataatttgaagacgattgtcaaaaatgtgggtgtagggtacttggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009295 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

138

Amino Acids

15.62

Weight (kDa)

10.27

Isoelectric Point (pI)

68.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65220
fragaria_vesca	FvH4_1g20710
malus_domestica	MD00G1199600.v1.1 MD01G1031300.v1.1
prunus_persica	Prupe.6G188000_v2.0.a1
pyrus_communis	pycom01g05890
rosa_chinensis	RchiOBHm_Chr2g0113161
rosa_laevigata	RLG00000018048
rosa_multiflora	Rmu_sc0006838.1_g000024 Rmu_sc0035384.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129560 Rroxscaffold_2G00129750
rosa_rugosa	Rorug02G0185900
rosa_samantha	Rh2AG240200 Rh2BG254100 Rh2CG244200 Rh2DG248100
rosa_wichuraiana	Rw2G018800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	133, 292
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	85, 356, 376
AjiI	CACGTC	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	23, 55, 156, 268, 362
AluI	AGCT	5 cut(s)	23, 55, 156, 268, 362
Alw21I	GWGCWC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	88, 183
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	11, 336
AspS9I	GGNCC	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	156, 383
Bbv12I	GWGCWC	1 cut(s)	270
BccI	CCATC	2 cut(s)	74, 175
BceAI	ACGGC	3 cut(s)	103, 145, 150
BglI	GCCNNNNNGGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	150
BoxI	GACNNNNGTC	1 cut(s)	383
BpiI	GAAGAC	2 cut(s)	156, 383
BpmI	CTGGAG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	33, 132, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 292
BseDI	CCNNGG	3 cut(s)	33, 132, 171
BseGI	GGATG	2 cut(s)	66, 311
BseLI	CCNNNNNNNGG	2 cut(s)	133, 292
BseMII	CTCAG	1 cut(s)	106
BseRI	GAGGAG	2 cut(s)	47, 257
BshFI	GGCC	2 cut(s)	90, 185
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	133, 292
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	90, 185
Bsp1286I	GDGCHC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	90, 185
BspCNI	CTCAG	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	33, 132, 171
BssNI	GRCGYC	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	192, 275
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	92
BstDSI	CCRYGG	3 cut(s)	33, 132, 171
BstF5I	GGATG	2 cut(s)	66, 311
BstHHI	GCGC	2 cut(s)	11, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 274
BstPAI	GACNNNNGTC	1 cut(s)	383
BstV2I	GAAGAC	2 cut(s)	156, 383
BsuRI	GGCC	2 cut(s)	90, 185
BtgI	CCRYGG	3 cut(s)	33, 132, 171
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	66, 311
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	2 cut(s)	11, 336
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	8 cut(s)	23, 55, 90, 156, 185, 268, 296, 362
CviKI_1	RGCY	8 cut(s)	23, 55, 90, 156, 185, 268, 296, 362
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	192, 275
EarI	CTCTTC	2 cut(s)	192, 275
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	20, 179, 275, 332, 369
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	2 cut(s)	53, 298
FriOI	GRGCYC	1 cut(s)	270
FspI	TGCGCA	1 cut(s)	335
GlaI	GCGC	2 cut(s)	10, 335
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	90, 185
HapII	CCGG	1 cut(s)	325
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	2 cut(s)	11, 336
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	2 cut(s)	9, 334
HinP1I	GCGC	2 cut(s)	9, 334
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	253, 309
Hpy188I	TCNGA	4 cut(s)	95, 147, 215, 300
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	253, 309
Hpy99I	CGWCG	2 cut(s)	119, 142
HpyAV	CCTTC	3 cut(s)	39, 91, 199
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 274
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	2 cut(s)	9, 334
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	28, 60
LpnPI	CCDG	4 cut(s)	166, 299, 328, 338
MaeII	ACGT	1 cut(s)	105
MboII	GAAGA	5 cut(s)	156, 209, 242, 262, 388
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	370
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	2 cut(s)	258, 415
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	117, 274
NlaIII	CATG	1 cut(s)	277
NsbI	TGCGCA	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PshAI	GACNNNNGTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	150
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	258, 415
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	150
Sse9I	AATT	1 cut(s)	370
SstI	GAGCTC	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	258, 415
Tru9I	TTAA	2 cut(s)	258, 415
TspDTI	ATGAA	3 cut(s)	218, 262, 338
TspGWI	ACGGA	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.