pycom01g05890

50S ribosomal protein L29

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013530
Physical Location & Seq
Forward (+)
5803673 .. 5804776
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05890.2

Sequence Viewer

Length: 528 bp
ATGTTGGGCGCAATCTCCATAGCTCCACCTTCAACGGTTACATTTCCCTCAAAGCTGCTGTCGCCAGTCTCCAAGTCCTCCTTCAATGGCATGCGAGTCCAACGCCTTTGCCCAAACATCGGCGTTCGTCTTCCGACGGAGTCATCTCGGAGGCCGTGCTCGCCGTCGTCTTCGGTTGTGATGATGGCCAAGAGAGAGGAAGAAATGAAGGAAATCAGGACCAAAACCACCGAAGAAATCAACGAGGAGGTGGTCGACCTCAAAGGAGAGCTCTTCATGCTTCGCCTCCAGAAATCGGCTCGCAACGAGTTCACTTCCAGCGAGTTCCGTCGAATGCGCAAAAGGATTGCTCGCTTGCTTACTGTTAAACGGGAAAGAGAAATTGAGGAGGGAATTGGTAAGAGGCTATCAAGAAAGTTCGATCGACAATGGAAGAAAAGCATTGTTGTTAGACCGCCTCCGTCGTTGAAGAAGTTGCAAGAGGAAGAAGCAGCTGCAGAAGCTGCTGAGAAGGCTGCATCTGCATGA

Protein Analysis

176

Amino Acids

19.87

Weight (kDa)

10.2

Isoelectric Point (pI)

78.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65220
fragaria_vesca FvH4_1g20710
malus_domestica MD00G1199600.v1.1 MD01G1031300.v1.1
prunus_persica Prupe.6G188000_v2.0.a1
pyrus_communis pycom01g05890
rosa_chinensis RchiOBHm_Chr2g0113161
rosa_laevigata RLG00000018048
rosa_multiflora Rmu_sc0006838.1_g000024 Rmu_sc0035384.1_g000001
rosa_roxburghii Rroxscaffold_2G00129560 Rroxscaffold_2G00129750
rosa_rugosa Rorug02G0185900
rosa_samantha Rh2AG240200 Rh2BG254100 Rh2CG244200 Rh2DG248100
rosa_wichuraiana Rw2G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 338
AccI GTMKAC 1 cut(s) 255
AciI CCGC 1 cut(s) 455
AcoI YGGCCR 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 119, 295
AgsI TTSAA 3 cut(s) 33, 85, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 5 cut(s) 23, 55, 271, 494, 503
AluI AGCT 5 cut(s) 23, 55, 271, 494, 503
Alw21I GWGCWC 2 cut(s) 161, 273
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 2 cut(s) 152, 186
ApeKI GCWGC 5 cut(s) 55, 491, 494, 503, 515
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 2 cut(s) 11, 339
AspS9I GGNCC 1 cut(s) 219
AvaII GGWCC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 188
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 122, 162
Bbv12I GWGCWC 2 cut(s) 161, 273
BbvI GCAGC 5 cut(s) 42, 481, 490, 502, 503
BccI CCATC 1 cut(s) 178
BceAI ACGGC 2 cut(s) 139, 148
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 495
BisI GCNGC 5 cut(s) 56, 492, 495, 504, 516
BlsI GCNGC 5 cut(s) 57, 493, 496, 505, 517
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BpiI GAAGAC 2 cut(s) 122, 162
BpmI CTGGAG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 295
Bse1I ACTGG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 119, 295
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 2 cut(s) 260, 401
BseXI GCAGC 5 cut(s) 42, 481, 490, 502, 503
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 2 cut(s) 154, 188
BsiEI CGRYCG 1 cut(s) 424
BsiHKAI GWGCWC 2 cut(s) 161, 273
BslI CCNNNNNNNGG 2 cut(s) 119, 295
BsmAI GTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 2 cut(s) 154, 188
Bsp1286I GDGCHC 2 cut(s) 161, 273
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 1 cut(s) 455
BspANI GGCC 2 cut(s) 154, 188
BspCNI CTCAG 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 499
BspQI GCTCTTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 65
BssMI GATC 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 37, 364
Bst6I CTCTTC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 5 cut(s) 92, 161, 301, 352, 356
BstDEI CTNAG 1 cut(s) 507
BstHHI GCGC 2 cut(s) 11, 339
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 421
BstMCI CGRYCG 1 cut(s) 424
BstMWI GCNNNNNNNGC 7 cut(s) 61, 160, 277, 500, 503, 512, 521
BstNSI RCATGY 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 5 cut(s) 42, 481, 490, 502, 503
BstV2I GAAGAC 2 cut(s) 122, 162
BsuRI GGCC 2 cut(s) 154, 188
Cac8I GCNNGC 5 cut(s) 92, 161, 301, 352, 356
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 2 cut(s) 11, 339
Cfr13I GGNCC 1 cut(s) 219
CviAII CATG 3 cut(s) 91, 277, 525
DdeI CTNAG 1 cut(s) 507
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 273
FaeI CATG 3 cut(s) 94, 280, 528
FaiI YATR 4 cut(s) 20, 92, 278, 526
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 3 cut(s) 90, 276, 524
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 5 cut(s) 56, 492, 495, 504, 516
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 5 cut(s) 56, 492, 495, 504, 516
FspI TGCGCA 1 cut(s) 338
GlaI GCGC 2 cut(s) 10, 338
GluI GCNGC 5 cut(s) 56, 492, 495, 504, 516
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 154, 188
HhaI GCGC 2 cut(s) 11, 339
Hin1II CATG 3 cut(s) 94, 280, 528
Hin6I GCGC 2 cut(s) 9, 337
HinP1I GCGC 2 cut(s) 9, 337
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 96, 140
Hpy166II GTNNAC 2 cut(s) 256, 312
Hpy188I TCNGA 2 cut(s) 135, 150
Hpy188III TCNNGA 3 cut(s) 217, 289, 411
Hpy8I GTNNAC 2 cut(s) 256, 312
Hpy99I CGWCG 4 cut(s) 139, 169, 333, 466
HpyAV CCTTC 4 cut(s) 39, 91, 202, 505
HpyCH4III ACNGT 2 cut(s) 37, 364
HpyCH4V TGCA 4 cut(s) 478, 497, 518, 524
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 160, 277, 500, 503, 512, 521
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 3 cut(s) 94, 280, 528
HspAI GCGC 2 cut(s) 9, 337
Kzo9I GATC 1 cut(s) 421
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 78, 202, 302, 331
Lsp1109I GCAGC 5 cut(s) 42, 481, 490, 502, 503
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 8 cut(s) 122, 162, 212, 245, 265, 445, 481, 497
MhlI GDGCHC 2 cut(s) 161, 273
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 2 cut(s) 381, 393
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 2 cut(s) 105, 149
MmeI TCCRAC 2 cut(s) 124, 158
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 523
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 339
MwoI GCNNNNNNNGC 7 cut(s) 61, 160, 277, 500, 503, 512, 521
NdeII GATC 1 cut(s) 421
NlaIII CATG 3 cut(s) 94, 280, 528
NsbI TGCGCA 1 cut(s) 338
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 278
PctI GAATGC 1 cut(s) 339
PflFI GACNNNGTC 1 cut(s) 139
PkrI GCNGC 5 cut(s) 57, 493, 496, 505, 517
Ple19I CGATCG 1 cut(s) 424
PleI GAGTC 2 cut(s) 104, 148
PpsI GAGTC 2 cut(s) 104, 148
Psp124BI GAGCTC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 219
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 139
PvuI CGATCG 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 523
SacI GAGCTC 1 cut(s) 273
SalI GTCGAC 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 5 cut(s) 56, 492, 495, 504, 516
Sau3AI GATC 1 cut(s) 421
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 2 cut(s) 105, 149
SduI GDGCHC 2 cut(s) 161, 273
SetI ASST 8 cut(s) 25, 31, 57, 252, 261, 273, 496, 505
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 523
SphI GCATGC 1 cut(s) 94
Sse9I AATT 2 cut(s) 381, 393
SsiI CCGC 1 cut(s) 455
SstI GAGCTC 1 cut(s) 273
TaaI ACNGT 2 cut(s) 37, 364
TaqI TCGA 4 cut(s) 255, 331, 420, 424
TasI AATT 2 cut(s) 381, 393
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseI GCWGC 5 cut(s) 55, 491, 494, 503, 515
TspDTI ATGAA 2 cut(s) 221, 265
TspGWI ACGGA 3 cut(s) 152, 317, 450
Tth111I GACNNNGTC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 219
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.