Oxidoreductase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G67290 |
| fragaria_vesca | FvH4_1g16760 |
| malus_domestica | MD02G1178800.v1.1 |
| prunus_persica | Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1 |
| pyrus_communis | pycom02g14490 pycom13g07680 pycom17g18320 |
| rosa_chinensis | RchiOBHm_Chr2g0106661 |
| rosa_laevigata | RLG00000017527 |
| rosa_multiflora | Rmu_co8508061.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00136910 |
| rosa_rugosa | Rorug02G0137200 Rorug02G0137300 Rorug02G0137400 Rorug02G0137500 |
| rosa_samantha | Rh2AG188600 Rh2BG199700 Rh2CG193700 Rh2DG194900 |
| rosa_wichuraiana | Rw2G014820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 209, 1087 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 707 |
| AccI | GTMKAC | 1 cut(s) | 585 |
| AccIII | TCCGGA | 3 cut(s) | 257, 443, 952 |
| AclWI | GGATC | 3 cut(s) | 88, 384, 923 |
| AcsI | RAATTY | 1 cut(s) | 713 |
| AcyI | GRCGYC | 3 cut(s) | 168, 210, 582 |
| AfaI | GTAC | 3 cut(s) | 746, 866, 1057 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 13, 96, 288, 707, 836, 1079, 1157 |
| AflII | CTTAAG | 1 cut(s) | 1244 |
| AgsI | TTSAA | 1 cut(s) | 334 |
| AjiI | CACGTC | 1 cut(s) | 589 |
| AjnI | CCWGG | 2 cut(s) | 522, 1090 |
| AluBI | AGCT | 9 cut(s) | 78, 330, 432, 538, 639, 721, 1163, 1177, 1196 |
| AluI | AGCT | 9 cut(s) | 78, 330, 432, 538, 639, 721, 1163, 1177, 1196 |
| Alw21I | GWGCWC | 3 cut(s) | 434, 612, 641 |
| Alw26I | GTCTC | 3 cut(s) | 429, 506, 837 |
| AlwI | GGATC | 3 cut(s) | 88, 384, 923 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 53 |
| Aor13HI | TCCGGA | 3 cut(s) | 257, 443, 952 |
| AoxI | GGCC | 4 cut(s) | 302, 367, 476, 698 |
| ApaI | GGGCCC | 1 cut(s) | 306 |
| ApeKI | GCWGC | 2 cut(s) | 251, 1163 |
| ApoI | RAATTY | 1 cut(s) | 713 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 541, 573 |
| AspLEI | GCGC | 5 cut(s) | 6, 212, 251, 694, 811 |
| AsuC2I | CCSGG | 2 cut(s) | 480, 547 |
| AsuHPI | GGTGA | 8 cut(s) | 15, 30, 125, 388, 403, 604, 893, 1036 |
| AsuII | TTCGAA | 1 cut(s) | 560 |
| AsuNHI | GCTAGC | 1 cut(s) | 1196 |
| AvaII | GGWCC | 7 cut(s) | 87, 127, 504, 526, 549, 853, 1148 |
| AxyI | CCTNAGG | 1 cut(s) | 789 |
| BaeGI | GKGCMC | 1 cut(s) | 306 |
| BanI | GGYRCC | 2 cut(s) | 209, 1087 |
| BanII | GRGCYC | 3 cut(s) | 306, 434, 641 |
| Bbv12I | GWGCWC | 3 cut(s) | 434, 612, 641 |
| BbvCI | CCTCAGC | 1 cut(s) | 534 |
| BbvI | GCAGC | 2 cut(s) | 238, 1150 |
| BccI | CCATC | 5 cut(s) | 467, 506, 537, 1058, 1181 |
| BceAI | ACGGC | 4 cut(s) | 313, 382, 397, 445 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 949, 983 |
| BciT130I | CCWGG | 2 cut(s) | 524, 1092 |
| BcnI | CCSGG | 2 cut(s) | 480, 547 |
| BcoDI | GTCTC | 3 cut(s) | 429, 506, 837 |
| BfaI | CTAG | 1 cut(s) | 1197 |
| BfoI | RGCGCY | 2 cut(s) | 213, 695 |
| BfrI | CTTAAG | 1 cut(s) | 1244 |
| BglII | AGATCT | 1 cut(s) | 1207 |
| BisI | GCNGC | 8 cut(s) | 160, 163, 166, 208, 252, 271, 567, 1164 |
| BlpI | GCTNAGC | 1 cut(s) | 1173 |
| BlsI | GCNGC | 8 cut(s) | 161, 164, 167, 209, 253, 272, 568, 1165 |
| Bme1390I | CCNGG | 4 cut(s) | 480, 524, 547, 1092 |
| Bme18I | GGWCC | 7 cut(s) | 87, 127, 504, 526, 549, 853, 1148 |
| BmgBI | CACGTC | 1 cut(s) | 589 |
| BmiI | GGNNCC | 9 cut(s) | 211, 304, 305, 370, 505, 699, 777, 855, 1089 |
| BmrFI | CCNGG | 4 cut(s) | 480, 524, 547, 1092 |
| BmrI | ACTGGG | 1 cut(s) | 1128 |
| BmsI | GCATC | 2 cut(s) | 29, 122 |
| BmtI | GCTAGC | 1 cut(s) | 1200 |
| BmuI | ACTGGG | 1 cut(s) | 1128 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 221, 253 |
| BpmI | CTGGAG | 1 cut(s) | 1179 |
| Bpu10I | CCTNAGC | 1 cut(s) | 534 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1173 |
| Bpu14I | TTCGAA | 1 cut(s) | 560 |
| BpuEI | CTTGAG | 2 cut(s) | 339, 819 |
| BpuMI | CCSGG | 2 cut(s) | 480, 547 |
| BsaHI | GRCGYC | 3 cut(s) | 168, 210, 582 |
| BsaI | GGTCTC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 6 cut(s) | 240, 507, 522, 701, 849, 1091 |
| BsaWI | WCCGGW | 5 cut(s) | 96, 257, 443, 922, 952 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 648, 678, 1152, 1182 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 13, 96, 288, 707, 836, 1079, 1157 |
| Bse118I | RCCGGY | 1 cut(s) | 266 |
| Bse1I | ACTGG | 2 cut(s) | 1123, 1162 |
| Bse21I | CCTNAGG | 1 cut(s) | 789 |
| BseAI | TCCGGA | 3 cut(s) | 257, 443, 952 |
| BseBI | CCWGG | 2 cut(s) | 524, 1092 |
| BseDI | CCNNGG | 6 cut(s) | 240, 507, 522, 701, 849, 1091 |
| BseGI | GGATG | 4 cut(s) | 529, 906, 931, 1192 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 13, 96, 288, 707, 836, 1079, 1157 |
| BseMII | CTCAG | 8 cut(s) | 322, 418, 440, 548, 780, 809, 1164, 1225 |
| BseNI | ACTGG | 2 cut(s) | 1123, 1162 |
| BseSI | GKGCMC | 1 cut(s) | 306 |
| BseXI | GCAGC | 2 cut(s) | 238, 1150 |
| BseYI | CCCAGC | 2 cut(s) | 694, 1238 |
| Bsh1285I | CGRYCG | 1 cut(s) | 101 |
| BshFI | GGCC | 4 cut(s) | 304, 369, 478, 700 |
| BshNI | GGYRCC | 2 cut(s) | 209, 1087 |
| BsiEI | CGRYCG | 1 cut(s) | 101 |
| BsiHKAI | GWGCWC | 3 cut(s) | 434, 612, 641 |
| BsiSI | CCGG | 9 cut(s) | 97, 258, 267, 444, 479, 547, 923, 953, 1226 |
| BslFI | GGGAC | 2 cut(s) | 517, 1055 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 13, 96, 288, 707, 836, 1079, 1157 |
| BsmAI | GTCTC | 3 cut(s) | 429, 506, 837 |
| BsmBI | CGTCTC | 1 cut(s) | 837 |
| BsmFI | GGGAC | 2 cut(s) | 517, 1055 |
| BsnI | GGCC | 4 cut(s) | 304, 369, 478, 700 |
| Bso31I | GGTCTC | 1 cut(s) | 506 |
| Bsp119I | TTCGAA | 1 cut(s) | 560 |
| Bsp120I | GGGCCC | 1 cut(s) | 302 |
| Bsp1286I | GDGCHC | 4 cut(s) | 306, 434, 612, 641 |
| Bsp13I | TCCGGA | 3 cut(s) | 257, 443, 952 |
| Bsp143I | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1173 |
| Bsp19I | CCATGG | 1 cut(s) | 701 |
| BspANI | GGCC | 4 cut(s) | 304, 369, 478, 700 |
| BspCNI | CTCAG | 8 cut(s) | 321, 417, 439, 547, 781, 810, 1165, 1224 |
| BspEI | TCCGGA | 3 cut(s) | 257, 443, 952 |
| BspLI | GGNNCC | 9 cut(s) | 211, 304, 305, 370, 505, 699, 777, 855, 1089 |
| BspOI | GCTAGC | 1 cut(s) | 1200 |
| BspPI | GGATC | 3 cut(s) | 88, 384, 923 |
| BspT104I | TTCGAA | 1 cut(s) | 560 |
| BspT107I | GGYRCC | 2 cut(s) | 209, 1087 |
| BspTI | CTTAAG | 1 cut(s) | 1244 |
| BspTNI | GGTCTC | 1 cut(s) | 506 |
| BsrFI | RCCGGY | 1 cut(s) | 266 |
| BsrI | ACTGG | 2 cut(s) | 1123, 1162 |
| BssAI | RCCGGY | 1 cut(s) | 266 |
| BssECI | CCNNGG | 6 cut(s) | 240, 507, 522, 701, 849, 1091 |
| BssMI | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| BssNI | GRCGYC | 3 cut(s) | 168, 210, 582 |
| BssT1I | CCWWGG | 2 cut(s) | 701, 849 |
| Bst2UI | CCWGG | 2 cut(s) | 524, 1092 |
| Bst4CI | ACNGT | 5 cut(s) | 49, 217, 344, 415, 749 |
| BstACI | GRCGYC | 3 cut(s) | 168, 210, 582 |
| BstAFI | CTTAAG | 1 cut(s) | 1244 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1235 |
| BstBI | TTCGAA | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 8 cut(s) | 247, 268, 302, 328, 351, 985, 1038, 1198 |
| BstDEI | CTNAG | 9 cut(s) | 196, 308, 404, 426, 534, 789, 818, 1173, 1211 |
| BstDSI | CCRYGG | 3 cut(s) | 240, 507, 701 |
| BstF5I | GGATG | 4 cut(s) | 529, 906, 931, 1192 |
| BstH2I | RGCGCY | 2 cut(s) | 213, 695 |
| BstHHI | GCGC | 5 cut(s) | 6, 212, 251, 694, 811 |
| BstKTI | GATC | 4 cut(s) | 96, 392, 931, 1210 |
| BstMAI | GTCTC | 3 cut(s) | 429, 506, 837 |
| BstMBI | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| BstMCI | CGRYCG | 1 cut(s) | 101 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 165, 174, 251, 1037, 1160, 1169, 1235 |
| BstNI | CCWGG | 2 cut(s) | 524, 1092 |
| BstNSI | RCATGY | 1 cut(s) | 1044 |
| BstSCI | CCNGG | 4 cut(s) | 478, 522, 545, 1090 |
| BstSLI | GKGCMC | 1 cut(s) | 306 |
| BstV1I | GCAGC | 2 cut(s) | 238, 1150 |
| BstX2I | RGATCY | 1 cut(s) | 1207 |
| BstYI | RGATCY | 1 cut(s) | 1207 |
| Bsu36I | CCTNAGG | 1 cut(s) | 789 |
| BsuRI | GGCC | 4 cut(s) | 304, 369, 478, 700 |
| BtgI | CCRYGG | 3 cut(s) | 240, 507, 701 |
| BtgZI | GCGATG | 1 cut(s) | 102 |
| BtrI | CACGTC | 1 cut(s) | 589 |
| BtsCI | GGATG | 4 cut(s) | 529, 906, 931, 1192 |
| BtsI | GCAGTG | 1 cut(s) | 994 |
| BtsIMutI | CAGTG | 2 cut(s) | 994, 1155 |
| Cac8I | GCNNGC | 8 cut(s) | 247, 268, 302, 328, 351, 985, 1038, 1198 |
| CaiI | CAGNNNCTG | 1 cut(s) | 53 |
| CfoI | GCGC | 5 cut(s) | 6, 212, 251, 694, 811 |
| Cfr10I | RCCGGY | 1 cut(s) | 266 |
| CseI | GACGC | 3 cut(s) | 157, 571, 686 |
| Csp6I | GTAC | 3 cut(s) | 745, 865, 1056 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 129, 164 |
| CviAII | CATG | 3 cut(s) | 702, 806, 1041 |
| CviQI | GTAC | 3 cut(s) | 745, 865, 1056 |
| DdeI | CTNAG | 9 cut(s) | 196, 308, 404, 426, 534, 789, 818, 1173, 1211 |
| DinI | GGCGCC | 1 cut(s) | 211 |
| DpnI | GATC | 4 cut(s) | 95, 391, 930, 1209 |
| DpnII | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| EciI | GGCGGA | 1 cut(s) | 584 |
| Ecl136II | GAGCTC | 2 cut(s) | 432, 639 |
| Eco130I | CCWWGG | 2 cut(s) | 701, 849 |
| Eco24I | GRGCYC | 3 cut(s) | 306, 434, 641 |
| Eco31I | GGTCTC | 1 cut(s) | 506 |
| Eco47I | GGWCC | 7 cut(s) | 87, 127, 504, 526, 549, 853, 1148 |
| Eco53kI | GAGCTC | 2 cut(s) | 432, 639 |
| Eco81I | CCTNAGG | 1 cut(s) | 789 |
| EcoICRI | GAGCTC | 2 cut(s) | 432, 639 |
| EcoO109I | RGGNCCY | 2 cut(s) | 87, 303 |
| EcoRII | CCWGG | 2 cut(s) | 522, 1090 |
| EcoT14I | CCWWGG | 2 cut(s) | 701, 849 |
| EcoT38I | GRGCYC | 3 cut(s) | 306, 434, 641 |
| EgeI | GGCGCC | 1 cut(s) | 211 |
| EheI | GGCGCC | 1 cut(s) | 211 |
| ErhI | CCWWGG | 2 cut(s) | 701, 849 |
| Esp3I | CGTCTC | 1 cut(s) | 837 |
| FaeI | CATG | 3 cut(s) | 705, 809, 1044 |
| FaqI | GGGAC | 2 cut(s) | 517, 1055 |
| FatI | CATG | 3 cut(s) | 701, 805, 1040 |
| FauI | CCCGC | 1 cut(s) | 293 |
| FauNDI | CATATG | 1 cut(s) | 9 |
| FblI | GTMKAC | 1 cut(s) | 585 |
| Fnu4HI | GCNGC | 8 cut(s) | 160, 163, 166, 208, 252, 271, 567, 1164 |
| FokI | GGATG | 4 cut(s) | 516, 913, 938, 1199 |
| FriOI | GRGCYC | 3 cut(s) | 306, 434, 641 |
| Fsp4HI | GCNGC | 8 cut(s) | 160, 163, 166, 208, 252, 271, 567, 1164 |
| FspBI | CTAG | 1 cut(s) | 1197 |
| GlaI | GCGC | 5 cut(s) | 5, 211, 250, 693, 810 |
| GluI | GCNGC | 8 cut(s) | 160, 163, 166, 208, 252, 271, 567, 1164 |
| GsaI | CCCAGC | 2 cut(s) | 698, 1242 |
| GsuI | CTGGAG | 1 cut(s) | 1179 |
| HaeII | RGCGCY | 2 cut(s) | 213, 695 |
| HaeIII | GGCC | 4 cut(s) | 304, 369, 478, 700 |
| HapII | CCGG | 9 cut(s) | 97, 258, 267, 444, 479, 547, 923, 953, 1226 |
| HgaI | GACGC | 3 cut(s) | 157, 571, 686 |
| HhaI | GCGC | 5 cut(s) | 6, 212, 251, 694, 811 |
| Hin1I | GRCGYC | 3 cut(s) | 168, 210, 582 |
| Hin1II | CATG | 3 cut(s) | 705, 809, 1044 |
| Hin6I | GCGC | 5 cut(s) | 4, 210, 249, 692, 809 |
| HinP1I | GCGC | 5 cut(s) | 4, 210, 249, 692, 809 |
| HincII | GTYRAC | 1 cut(s) | 586 |
| HindII | GTYRAC | 1 cut(s) | 586 |
| HinfI | GANTC | 5 cut(s) | 422, 487, 671, 956, 1138 |
| HpaII | CCGG | 9 cut(s) | 97, 258, 267, 444, 479, 547, 923, 953, 1226 |
| HphI | GGTGA | 8 cut(s) | 15, 30, 125, 388, 403, 604, 893, 1036 |
| Hpy166II | GTNNAC | 4 cut(s) | 586, 622, 745, 865 |
| Hpy188I | TCNGA | 7 cut(s) | 65, 429, 486, 492, 676, 740, 1143 |
| Hpy188III | TCNNGA | 8 cut(s) | 229, 258, 356, 444, 502, 817, 932, 953 |
| Hpy8I | GTNNAC | 4 cut(s) | 586, 622, 745, 865 |
| Hpy99I | CGWCG | 5 cut(s) | 230, 368, 587, 590, 733 |
| HpyAV | CCTTC | 5 cut(s) | 140, 556, 1004, 1021, 1243 |
| HpyCH4III | ACNGT | 5 cut(s) | 49, 217, 344, 415, 749 |
| HpyCH4IV | ACGT | 1 cut(s) | 588 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 183 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 165, 174, 251, 1037, 1160, 1169, 1235 |
| HpyF3I | CTNAG | 9 cut(s) | 196, 308, 404, 426, 534, 789, 818, 1173, 1211 |
| HpySE526I | ACGT | 1 cut(s) | 588 |
| Hsp92I | GRCGYC | 3 cut(s) | 168, 210, 582 |
| Hsp92II | CATG | 3 cut(s) | 705, 809, 1044 |
| HspAI | GCGC | 5 cut(s) | 4, 210, 249, 692, 809 |
| KasI | GGCGCC | 1 cut(s) | 209 |
| Kpn2I | TCCGGA | 3 cut(s) | 257, 443, 952 |
| KroI | GCCGGC | 1 cut(s) | 266 |
| KroNI | GCCGGC | 1 cut(s) | 268 |
| Kzo9I | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| LmnI | GCTCC | 3 cut(s) | 607, 775, 1160 |
| Lsp1109I | GCAGC | 2 cut(s) | 238, 1150 |
| LweI | GCATC | 2 cut(s) | 29, 122 |
| MaeI | CTAG | 1 cut(s) | 1197 |
| MaeII | ACGT | 1 cut(s) | 588 |
| MaeIII | GTNAC | 4 cut(s) | 217, 293, 415, 821 |
| MalI | GATC | 4 cut(s) | 95, 391, 930, 1209 |
| MboI | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| MflI | RGATCY | 1 cut(s) | 1207 |
| MhlI | GDGCHC | 4 cut(s) | 306, 434, 612, 641 |
| MluCI | AATT | 4 cut(s) | 373, 602, 713, 1126 |
| Mly113I | GGCGCC | 1 cut(s) | 210 |
| MlyI | GAGTC | 4 cut(s) | 431, 496, 665, 965 |
| MmeI | TCCRAC | 3 cut(s) | 88, 464, 753 |
| MroI | TCCGGA | 3 cut(s) | 257, 443, 952 |
| MroNI | GCCGGC | 1 cut(s) | 266 |
| MseI | TTAA | 4 cut(s) | 32, 1098, 1245, 1255 |
| MspCI | CTTAAG | 1 cut(s) | 1244 |
| MspI | CCGG | 9 cut(s) | 97, 258, 267, 444, 479, 547, 923, 953, 1226 |
| MspR9I | CCNGG | 4 cut(s) | 480, 524, 547, 1092 |
| MvaI | CCWGG | 2 cut(s) | 524, 1092 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 165, 174, 251, 1037, 1160, 1169, 1235 |
| NaeI | GCCGGC | 1 cut(s) | 268 |
| NarI | GGCGCC | 1 cut(s) | 210 |
| NciI | CCSGG | 2 cut(s) | 480, 547 |
| NcoI | CCATGG | 1 cut(s) | 701 |
| NdeI | CATATG | 1 cut(s) | 9 |
| NdeII | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| NgoMIV | GCCGGC | 1 cut(s) | 266 |
| NheI | GCTAGC | 1 cut(s) | 1196 |
| NlaIII | CATG | 3 cut(s) | 705, 809, 1044 |
| NlaIV | GGNNCC | 9 cut(s) | 211, 304, 305, 370, 505, 699, 777, 855, 1089 |
| NmuCI | GTSAC | 2 cut(s) | 293, 415 |
| NspI | RCATGY | 1 cut(s) | 1044 |
| NspV | TTCGAA | 1 cut(s) | 560 |
| PdiI | GCCGGC | 1 cut(s) | 268 |
| PfeI | GAWTC | 1 cut(s) | 1138 |
| PflFI | GACNNNGTC | 1 cut(s) | 680 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 707 |
| PkrI | GCNGC | 8 cut(s) | 161, 164, 167, 209, 253, 272, 568, 1165 |
| PleI | GAGTC | 4 cut(s) | 430, 495, 665, 964 |
| PluTI | GGCGCC | 1 cut(s) | 213 |
| PpsI | GAGTC | 4 cut(s) | 430, 495, 665, 964 |
| PpuMI | RGGWCCY | 1 cut(s) | 87 |
| Psp124BI | GAGCTC | 2 cut(s) | 434, 641 |
| Psp5II | RGGWCCY | 1 cut(s) | 87 |
| Psp6I | CCWGG | 2 cut(s) | 522, 1090 |
| PspFI | CCCAGC | 2 cut(s) | 694, 1238 |
| PspGI | CCWGG | 2 cut(s) | 522, 1090 |
| PspN4I | GGNNCC | 9 cut(s) | 211, 304, 305, 370, 505, 699, 777, 855, 1089 |
| PspOMI | GGGCCC | 1 cut(s) | 302 |
| PspPPI | RGGWCCY | 1 cut(s) | 87 |
| PstNI | CAGNNNCTG | 1 cut(s) | 53 |
| PsuI | RGATCY | 1 cut(s) | 1207 |
| PsyI | GACNNNGTC | 1 cut(s) | 680 |
| RsaI | GTAC | 3 cut(s) | 746, 866, 1057 |
| RsaNI | GTAC | 3 cut(s) | 745, 865, 1056 |
| SacI | GAGCTC | 2 cut(s) | 434, 641 |
| SalI | GTCGAC | 1 cut(s) | 584 |
| SaqAI | TTAA | 4 cut(s) | 32, 1098, 1245, 1255 |
| SatI | GCNGC | 8 cut(s) | 160, 163, 166, 208, 252, 271, 567, 1164 |
| Sau3AI | GATC | 4 cut(s) | 93, 389, 928, 1207 |
| SchI | GAGTC | 4 cut(s) | 431, 496, 665, 965 |
| ScrFI | CCNGG | 4 cut(s) | 480, 524, 547, 1092 |
| SduI | GDGCHC | 4 cut(s) | 306, 434, 612, 641 |
| SfaNI | GCATC | 2 cut(s) | 29, 122 |
| SfoI | GGCGCC | 1 cut(s) | 211 |
| SfuI | TTCGAA | 1 cut(s) | 560 |
| SgrDI | CGTCGACG | 1 cut(s) | 584 |
| SinI | GGWCC | 7 cut(s) | 87, 127, 504, 526, 549, 853, 1148 |
| SmlI | CTYRAG | 3 cut(s) | 354, 834, 1244 |
| SmoI | CTYRAG | 3 cut(s) | 354, 834, 1244 |
| Sse9I | AATT | 4 cut(s) | 373, 602, 713, 1126 |
| SspDI | GGCGCC | 1 cut(s) | 209 |
| SspMI | CTAG | 1 cut(s) | 1197 |
| SstI | GAGCTC | 2 cut(s) | 434, 641 |
| StyD4I | CCNGG | 4 cut(s) | 478, 522, 545, 1090 |
| StyI | CCWWGG | 2 cut(s) | 701, 849 |
| TaaI | ACNGT | 5 cut(s) | 49, 217, 344, 415, 749 |
| TaiI | ACGT | 1 cut(s) | 591 |
| TaqI | TCGA | 7 cut(s) | 228, 285, 363, 434, 560, 585, 959 |
| TasI | AATT | 4 cut(s) | 373, 602, 713, 1126 |
| TauI | GCSGC | 6 cut(s) | 162, 165, 168, 210, 273, 569 |
| TfiI | GAWTC | 1 cut(s) | 1138 |
| Tru1I | TTAA | 4 cut(s) | 32, 1098, 1245, 1255 |
| Tru9I | TTAA | 4 cut(s) | 32, 1098, 1245, 1255 |
| TscAI | CASTG | 2 cut(s) | 994, 1162 |
| TseFI | GTSAC | 2 cut(s) | 293, 415 |
| TseI | GCWGC | 2 cut(s) | 251, 1163 |
| Tsp45I | GTSAC | 2 cut(s) | 293, 415 |
| TspGWI | ACGGA | 3 cut(s) | 229, 524, 819 |
| TspRI | CASTG | 2 cut(s) | 994, 1162 |
| Tth111I | GACNNNGTC | 1 cut(s) | 680 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 707 |
| Vha464I | CTTAAG | 1 cut(s) | 1244 |
| VpaK11BI | GGWCC | 7 cut(s) | 87, 127, 504, 526, 549, 853, 1148 |
| XapI | RAATTY | 1 cut(s) | 713 |
| XceI | RCATGY | 1 cut(s) | 1044 |
| XmiI | GTMKAC | 1 cut(s) | 585 |
| XspI | CTAG | 1 cut(s) | 1197 |