Rorug02G0137200

Oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009595
Physical Location & Seq
Forward (+)
12094679 .. 12096074
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0137200.1

Sequence Viewer

Length: 1182 bp
ATGGCAGGAAGACTTCAATTGATCAAGGCTGTTATTTATAGTATGCTTGTTTATAGCTTCCAGGTGTATGAGTGGCCGGTTTCCTTATTGCTGCGTCAGATAGAGGTTTGGTGCCGGAATTTCTTATGGTCAGGTTCAATTGACAAACGTGGAGTTCCTTTAGTTTCATGGAAGTCTTGTTGTGCTTCAGTAGATGAAGGAGGGTTGGGGCTCAGGCAACTAGTTCTGCTTAATCAATCTCTACTTCTAAAAAGGTGTTGGGAAATATATTCTTCTTCTGCCGTGAGTTGTTTGTTCATTCGAAATAGATTTTGGCGTGGCGGTTTGATGAGGCGTTCTTATGTTCCTTCATCCATATGGCCTGGGGTGAAGAAGTTTTGGTCAGTGGTTATGGAGAATGCACAATGGTTGATTGGTCAGGGTACAAATATCTCTTTTTGGAGGGATAATTTTATGGGGAAGCCTAATATTATTGACTTCTTTGGACCTCATACTATCGTGGACAATCTGCATGGGTATGTGGCTGATTATATTAGTAATGGCTCTTGGGTCATTCCTGATCTCCTTCATTTGCATTACCCTGCGTTGTGTGAGTTGATTGAAAAAGTCCTTTTAGCTATGGATCCTTCGGTGGAGGAGAAGGTAATTTGGTCTTCTGCTGCATCAGGGGAGCTCACGGCAAAGAATGCTTTTCAGTTTCTACGCCAACCTCTTCCAACAATGAATTGGGGTAAGTGTATATGGTCTAAATTTATCACTCCTAGAATGTCTTTACTTACTTGGAAGGTGCTACGGGGTAGGATACTATCAGACGATTTTTTACAAAGAAGAGGAGTGGCTTTGGCATCGAGGCAAGCAAGGAATAAAATGAAGCATGAAGGTCAGGGTTTCAATGTGACAATAATTTGCCGTTTAATTGTTGGGCATGCTCAAGCTGCAAGTCGCATTGCTTCCAGCTATATGACCAACTCTCTTCTTGATCTTCAAGTGTTGAAGCATTTCGGAGTTCAATGTAAGCCGTGCCGTACTCCGTCAGTTATTGAGGTTAATTGGTTCCCTCCTCCTGTTGGGTGGGTGAAAATAAATACTGACGGTGCTTGGAAGCAAGATCCAGGCCGTTGTGGTTATGGAGCCGTTTTTTGTGACTATAGAGGAGAATTCATAACATTCCTAGTTCGATAG

Protein Analysis

393

Amino Acids

44.88

Weight (kDa)

9.53

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 226 - 284 4e-09 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AciI CCGC 1 cut(s) 321
AclWI GGATC 3 cut(s) 617, 630, 1103
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 3 cut(s) 118, 749, 1157
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 424, 1027
AfiI CCNNNNNNNGG 1 cut(s) 1067
AgsI TTSAA 7 cut(s) 17, 138, 602, 892, 986, 994, 1010
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 3 cut(s) 60, 361, 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 5 cut(s) 57, 617, 673, 935, 957
AluI AGCT 5 cut(s) 57, 617, 673, 935, 957
Alw21I GWGCWC 1 cut(s) 675
AlwI GGATC 3 cut(s) 617, 630, 1103
AoxI GGCC 3 cut(s) 74, 359, 1114
ApeKI GCWGC 3 cut(s) 91, 659, 935
ApoI RAATTY 3 cut(s) 118, 749, 1157
Asp700I GAANNNNTTC 1 cut(s) 998
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 379, 1087
AsuII TTCGAA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 485
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 2 cut(s) 213, 675
BbsI GAAGAC 2 cut(s) 16, 645
Bbv12I GWGCWC 1 cut(s) 675
BbvI GCAGC 3 cut(s) 78, 646, 922
BceAI ACGGC 7 cut(s) 266, 693, 894, 1003, 1008, 1101, 1118
BciT130I CCWGG 3 cut(s) 62, 363, 1113
BciVI GTATCC 1 cut(s) 795
BclI TGATCA 1 cut(s) 21
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 3 cut(s) 221, 762, 1172
BfmI CTRYAG 1 cut(s) 1147
BfuI GTATCC 1 cut(s) 795
BisI GCNGC 3 cut(s) 92, 660, 936
BlsI GCNGC 3 cut(s) 93, 661, 937
Bme1390I CCNGG 3 cut(s) 62, 363, 1113
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 4 cut(s) 113, 624, 1055, 1132
BmrFI CCNGG 3 cut(s) 62, 363, 1113
BmsI GCATC 2 cut(s) 671, 854
BpiI GAAGAC 2 cut(s) 16, 645
Bpu10I CCTNAGC 1 cut(s) 212
Bpu14I TTCGAA 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 915
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 1 cut(s) 1067
Bse118I RCCGGY 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 945
BseBI CCWGG 3 cut(s) 62, 363, 1113
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 1067
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 1 cut(s) 226
BseRI GAGGAG 4 cut(s) 650, 846, 1050, 1167
BseXI GCAGC 3 cut(s) 78, 646, 922
BshFI GGCC 3 cut(s) 76, 361, 1116
BshNI GGYRCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 675
BsiSI CCGG 2 cut(s) 77, 115
BslI CCNNNNNNNGG 1 cut(s) 1067
BsmI GAATGC 2 cut(s) 403, 691
BsnI GGCC 3 cut(s) 76, 361, 1116
Bsp119I TTCGAA 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 213, 675
Bsp143I GATC 5 cut(s) 21, 559, 622, 979, 1108
BspACI CCGC 1 cut(s) 321
BspANI GGCC 3 cut(s) 76, 361, 1116
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 113, 624, 1055, 1132
BspPI GGATC 3 cut(s) 617, 630, 1103
BspT104I TTCGAA 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 945
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 5 cut(s) 21, 559, 622, 979, 1108
Bst2UI CCWGG 3 cut(s) 62, 363, 1113
Bst4CI ACNGT 1 cut(s) 1094
Bst6I CTCTTC 3 cut(s) 717, 823, 978
BstAPI GCANNNNNTGC 1 cut(s) 686
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 855, 927
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 350
BstKTI GATC 5 cut(s) 24, 562, 625, 982, 1111
BstMBI GATC 5 cut(s) 21, 559, 622, 979, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 686, 935
BstNI CCWGG 3 cut(s) 62, 363, 1113
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 3 cut(s) 60, 361, 1111
BstSFI CTRYAG 1 cut(s) 1147
BstV1I GCAGC 3 cut(s) 78, 646, 922
BstV2I GAAGAC 2 cut(s) 16, 645
BstX2I RGATCY 2 cut(s) 622, 1108
BstYI RGATCY 2 cut(s) 622, 1108
BsuI GTATCC 1 cut(s) 795
BsuRI GGCC 3 cut(s) 76, 361, 1116
BtsCI GGATG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 855, 927
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 485
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 423, 1026
CviAII CATG 4 cut(s) 168, 512, 875, 926
CviQI GTAC 2 cut(s) 423, 1026
DdeI CTNAG 1 cut(s) 212
DpnI GATC 5 cut(s) 23, 561, 624, 981, 1110
DpnII GATC 5 cut(s) 21, 559, 622, 979, 1108
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 3 cut(s) 717, 823, 978
EarI CTCTTC 3 cut(s) 717, 823, 978
Ecl136II GAGCTC 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 213, 675
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 1157
EcoRII CCWGG 3 cut(s) 60, 361, 1111
EcoT38I GRGCYC 2 cut(s) 213, 675
FaeI CATG 4 cut(s) 171, 515, 878, 929
FatI CATG 4 cut(s) 167, 511, 874, 925
FauNDI CATATG 1 cut(s) 356
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 92, 660, 936
FokI GGATG 1 cut(s) 337
FriOI GRGCYC 2 cut(s) 213, 675
Fsp4HI GCNGC 3 cut(s) 92, 660, 936
FspBI CTAG 3 cut(s) 221, 762, 1172
GluI GCNGC 3 cut(s) 92, 660, 936
HaeIII GGCC 3 cut(s) 76, 361, 1116
HapII CCGG 2 cut(s) 77, 115
HgaI GACGC 1 cut(s) 83
Hin1II CATG 4 cut(s) 171, 515, 878, 929
HpaII CCGG 2 cut(s) 77, 115
HphI GGTGA 2 cut(s) 379, 1087
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 3 cut(s) 99, 811, 1004
Hpy188III TCNNGA 2 cut(s) 557, 977
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 7 cut(s) 191, 357, 575, 634, 636, 778, 872
HpyCH4III ACNGT 1 cut(s) 1094
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 5 cut(s) 401, 511, 574, 662, 938
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 935
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 4 cut(s) 171, 515, 878, 929
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 5 cut(s) 21, 559, 622, 979, 1108
LmnI GCTCC 2 cut(s) 670, 1130
Lsp1109I GCAGC 3 cut(s) 78, 646, 922
LweI GCATC 2 cut(s) 671, 854
MaeI CTAG 3 cut(s) 221, 762, 1172
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 895, 1142
MalI GATC 5 cut(s) 23, 561, 624, 981, 1110
MboI GATC 5 cut(s) 21, 559, 622, 979, 1108
MboII GAAGA 9 cut(s) 21, 264, 267, 382, 645, 704, 840, 965, 974
MfeI CAATTG 2 cut(s) 17, 138
MflI RGATCY 2 cut(s) 622, 1108
MhlI GDGCHC 2 cut(s) 213, 675
MmeI TCCRAC 1 cut(s) 740
MroXI GAANNNNTTC 1 cut(s) 998
MseI TTAA 3 cut(s) 231, 914, 1047
MslI CAYNNNNRTG 2 cut(s) 355, 516
MspI CCGG 2 cut(s) 77, 115
MspR9I CCNGG 3 cut(s) 62, 363, 1113
MunI CAATTG 2 cut(s) 17, 138
Mva1269I GAATGC 2 cut(s) 403, 691
MvaI CCWGG 3 cut(s) 62, 363, 1113
MwoI GCNNNNNNNGC 2 cut(s) 686, 935
NdeI CATATG 1 cut(s) 356
NdeII GATC 5 cut(s) 21, 559, 622, 979, 1108
NlaIII CATG 4 cut(s) 171, 515, 878, 929
NlaIV GGNNCC 4 cut(s) 113, 624, 1055, 1132
NmuCI GTSAC 2 cut(s) 895, 1142
NspI RCATGY 1 cut(s) 929
NspV TTCGAA 1 cut(s) 301
PaeI GCATGC 1 cut(s) 929
PctI GAATGC 2 cut(s) 403, 691
PdmI GAANNNNTTC 1 cut(s) 998
PkrI GCNGC 3 cut(s) 93, 661, 937
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 3 cut(s) 60, 361, 1111
PspGI CCWGG 3 cut(s) 60, 361, 1111
PspN4I GGNNCC 4 cut(s) 113, 624, 1055, 1132
PspPI GGNCC 1 cut(s) 485
PsuI RGATCY 2 cut(s) 622, 1108
RsaI GTAC 2 cut(s) 424, 1027
RsaNI GTAC 2 cut(s) 423, 1026
RseI CAYNNNNRTG 2 cut(s) 355, 516
SacI GAGCTC 1 cut(s) 675
SaqAI TTAA 3 cut(s) 231, 914, 1047
SatI GCNGC 3 cut(s) 92, 660, 936
Sau3AI GATC 5 cut(s) 21, 559, 622, 979, 1108
Sau96I GGNCC 1 cut(s) 485
ScrFI CCNGG 3 cut(s) 62, 363, 1113
SduI GDGCHC 2 cut(s) 213, 675
SfaNI GCATC 2 cut(s) 671, 854
SfcI CTRYAG 1 cut(s) 1147
SfuI TTCGAA 1 cut(s) 301
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 355, 516
SmlI CTYRAG 1 cut(s) 930
SmoI CTYRAG 1 cut(s) 930
SpeI ACTAGT 1 cut(s) 220
SphI GCATGC 1 cut(s) 929
SsiI CCGC 1 cut(s) 321
SspI AATATT 1 cut(s) 469
SspMI CTAG 3 cut(s) 221, 762, 1172
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 3 cut(s) 60, 361, 1111
TaaI ACNGT 1 cut(s) 1094
TaiI ACGT 1 cut(s) 151
TaqI TCGA 3 cut(s) 301, 848, 1177
Tru1I TTAA 3 cut(s) 231, 914, 1047
Tru9I TTAA 3 cut(s) 231, 914, 1047
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 2 cut(s) 895, 1142
TseI GCWGC 3 cut(s) 91, 659, 935
Tsp45I GTSAC 2 cut(s) 895, 1142
TspDTI ATGAA 9 cut(s) 156, 210, 286, 339, 557, 737, 884, 891, 1150
TspGWI ACGGA 1 cut(s) 1020
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 3 cut(s) 118, 749, 1157
XceI RCATGY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 723
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 3 cut(s) 221, 762, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.