Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009595

Physical Location & Seq

Genomic Coordinates Forward (+)

12108174 .. 12113709

Gene Structure 5536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0137400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTCTAATGAACGCATGGATTTCCAATACAATGATGATGTTATCGCATCGCTGAATGACCACGTCCCATATGAGGATAGTGAAACTCAAGATGTAGGTCGTTTATTTGTGAATGAACGAACAACAAGTCCCCAAAACAGAAATAGTGGAGGTAATGAGAGTAATAAGAAAAATACAAGAGGGAAAACCATTATTAAATGGGGTGTGAACGGAGTGCGAGAAAGAGTCAAGTGGGGAAAATCTGGTGCACCAGTGTGGCCGAGGGATAAGTGTGCACACTACTCAAAATTCATTGGTAGTCTAGCGGCTGATTGTGGATATTACCCTATTGACGTTAAGGATTGGCGGCATTTTGAGGAGGATGTCCATAGCAATGCATGGACACGTATTGAGGGGACAATTGATTGGACAGACCAAGCAACTTCCAGTAAAAGATCCAAAATCAAGTCGTATGCATTTGAAAGACTTGCAGATCGCTGGAAGCAACACAAGGCAAATCTGAAAAAAGTGTTTTGGTTACCTAAGCAAGGGACTGATGACCGTTTTAGCTGCCCTTACGCTGCCATTGACAGAGATCAATGGGTAAGGTGGGTTTCTCACTTGGATGAAGAGGATACTCAGACCAAGGCTGCTATAAATGTGAGTAATCGCTCGCAACGGGTAATGCATCATAGTACTGGCACAAGAACCTTTCCAGCAGTTGTTTATGAATGGCAACTTGAGAATGGGGTTGAGGAGGAACCTGATAGGCTAGAAATATTCAAGTTGACACATCGTAAGAAGGGGAAAAAAAATGAGTATGTAGATGCTGCATCTACCAAAGCAGTGCAAGATTTGGAAAAAGCTGAAGAGGAGAGAAGGAATTTGAATGTTGAAATAACTCCACAAGTTAGAGAAGATATCTATGCAGAGGTTCTTGGGGTAGAGAAGCGTAACCGAGTGAGGGGTCTTGGAGCGGGTGTCTGCTGGCGTGATGTTCCATATGTTCATACCGAGAAAAGAGGTGTTTCAAGCATTGTGGAAGCATTGACAGCAACAATTCAAGAACAACGCATGGAGACTGCAAGATTGAGGAGTGAAGCTGAAAAAGAGAGAATTGAAGCTGCCCAAAGGGAGGAAAGAATTAGGAAGGAAGCTGCTGACCTGGACAAAAAGTTCACAGCCCAAATGGAGCAGTTTAAGATACAGCAAGAGGCAATGATGGCAAGGAAGGTGAAGGAACTAGCAACACTTGAAATGGGTAGATGGATGAAAGAAGCTGGGTTTTCGGGGATTGACACAGCATCACAAGTAGATATTGAGCCAATGACTAAAGGTAGTAGACCCGTGATCCCAACCCCAGCCATCACTGATAGTGTATATCGCCCAGAAATGCCTCAAACTGTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0008150 GO:0008152 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0016491 GO:0031410 GO:0031982 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055114 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

463

Amino Acids

53.45

Weight (kDa)

7.67

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	190 - 320	5.6e-19	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67290
fragaria_vesca	FvH4_1g16760
malus_domestica	MD02G1178800.v1.1
prunus_persica	Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1
pyrus_communis	pycom02g14490 pycom13g07680 pycom17g18320
rosa_chinensis	RchiOBHm_Chr2g0106661
rosa_laevigata	RLG00000017527
rosa_multiflora	Rmu_co8508061.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136910
rosa_rugosa	Rorug02G0137200 Rorug02G0137300 Rorug02G0137400 Rorug02G0137500
rosa_samantha	Rh2AG188600 Rh2BG199700 Rh2CG193700 Rh2DG194900
rosa_wichuraiana	Rw2G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	956
AccI	GTMKAC	1 cut(s)	1321
AciI	CCGC	3 cut(s)	305, 346, 956
AclWI	GGATC	2 cut(s)	429, 1324
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	287, 862
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	4 cut(s)	73, 527, 943, 1114
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	8 cut(s)	461, 763, 868, 875, 1011, 1043, 1100, 1235
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	1143
AleI	CACNNNNGTG	1 cut(s)	253
AloI	GAACNNNNNNTCC	4 cut(s)	112, 144, 1139, 1171
AluBI	AGCT	6 cut(s)	549, 845, 1082, 1103, 1136, 1259
AluI	AGCT	6 cut(s)	549, 845, 1082, 1103, 1136, 1259
Alw21I	GWGCWC	2 cut(s)	250, 277
Alw26I	GTCTC	1 cut(s)	1052
Alw44I	GTGCAC	2 cut(s)	246, 273
AlwI	GGATC	2 cut(s)	429, 1324
AoxI	GGCC	1 cut(s)	257
ApaLI	GTGCAC	2 cut(s)	246, 273
ApeKI	GCWGC	6 cut(s)	549, 560, 629, 809, 1103, 1136
ApoI	RAATTY	2 cut(s)	287, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AsuHPI	GGTGA	1 cut(s)	1225
BaeGI	GKGCMC	2 cut(s)	250, 277
Bbv12I	GWGCWC	2 cut(s)	250, 277
BbvI	GCAGC	6 cut(s)	536, 547, 616, 796, 1090, 1123
BccI	CCATC	3 cut(s)	1195, 1239, 1352
BciT130I	CCWGG	1 cut(s)	1145
BciVI	GTATCC	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	1052
BfaI	CTAG	3 cut(s)	302, 752, 1223
BfuI	GTATCC	1 cut(s)	607
BisI	GCNGC	8 cut(s)	306, 347, 550, 561, 630, 810, 1104, 1137
BlsI	GCNGC	8 cut(s)	307, 348, 551, 562, 631, 811, 1105, 1138
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	1 cut(s)	1145
BmgBI	CACGTC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	1 cut(s)	1145
BmsI	GCATC	5 cut(s)	56, 676, 796, 821, 1292
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	72, 740
BsaAI	YACGTR	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	260, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	945, 975
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 527, 943, 1114
Bse1I	ACTGG	3 cut(s)	251, 426, 682
Bse3DI	GCAATG	2 cut(s)	379, 1203
BseBI	CCWGG	1 cut(s)	1145
BseDI	CCNNGG	2 cut(s)	260, 624
BseGI	GGATG	3 cut(s)	367, 610, 1254
BseLI	CCNNNNNNNGG	4 cut(s)	73, 527, 943, 1114
BseMI	GCAATG	2 cut(s)	379, 1203
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	3 cut(s)	251, 426, 682
BseRI	GAGGAG	4 cut(s)	371, 749, 866, 1087
BseSI	GKGCMC	2 cut(s)	250, 277
BseXI	GCAGC	6 cut(s)	536, 547, 616, 796, 1090, 1123
BseYI	CCCAGC	2 cut(s)	1259, 1339
BshFI	GGCC	1 cut(s)	259
BsiHKAI	GWGCWC	2 cut(s)	250, 277
BslFI	GGGAC	4 cut(s)	50, 114, 409, 544
BslI	CCNNNNNNNGG	4 cut(s)	73, 527, 943, 1114
BsmAI	GTCTC	1 cut(s)	1052
BsmFI	GGGAC	4 cut(s)	50, 114, 409, 544
BsnI	GGCC	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	250, 277
Bsp143I	GATC	4 cut(s)	434, 472, 574, 1329
BspACI	CCGC	3 cut(s)	305, 346, 956
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	741
BspPI	GGATC	2 cut(s)	429, 1324
BsrBI	CCGCTC	1 cut(s)	956
BsrDI	GCAATG	2 cut(s)	379, 1203
BsrI	ACTGG	3 cut(s)	251, 426, 682
BssECI	CCNNGG	2 cut(s)	260, 624
BssMI	GATC	4 cut(s)	434, 472, 574, 1329
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	1145
Bst4CI	ACNGT	2 cut(s)	542, 1384
Bst6I	CTCTTC	2 cut(s)	603, 843
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	653, 968
BstDEI	CTNAG	2 cut(s)	522, 618
BstEII	GGTNACC	1 cut(s)	516
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	3 cut(s)	367, 610, 1254
BstKTI	GATC	4 cut(s)	437, 475, 577, 1332
BstMAI	GTCTC	1 cut(s)	1052
BstMBI	GATC	4 cut(s)	434, 472, 574, 1329
BstMWI	GCNNNNNNNGC	2 cut(s)	1031, 1202
BstNI	CCWGG	1 cut(s)	1145
BstPI	GGTNACC	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	1143
BstSLI	GKGCMC	2 cut(s)	250, 277
BstV1I	GCAGC	6 cut(s)	536, 547, 616, 796, 1090, 1123
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	367, 610, 1254
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	3 cut(s)	258, 831, 1347
Cac8I	GCNNGC	2 cut(s)	653, 968
Csp6I	GTAC	1 cut(s)	675
CspCI	CAANNNNNGTGG	2 cut(s)	999, 1034
CviAII	CATG	3 cut(s)	16, 378, 1054
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	2 cut(s)	522, 618
DpnI	GATC	4 cut(s)	436, 474, 576, 1331
DpnII	GATC	4 cut(s)	434, 472, 574, 1329
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	603, 843
EarI	CTCTTC	2 cut(s)	603, 843
Eco130I	CCWWGG	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	867
Eco91I	GGTNACC	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	1143
EcoRV	GATATC	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	624
EcoT22I	ATGCAT	3 cut(s)	379, 457, 669
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	3 cut(s)	19, 381, 1057
FaqI	GGGAC	4 cut(s)	50, 114, 409, 544
FatI	CATG	3 cut(s)	15, 377, 1053
FauI	CCCGC	1 cut(s)	949
FauNDI	CATATG	2 cut(s)	70, 982
FblI	GTMKAC	1 cut(s)	1321
Fnu4HI	GCNGC	8 cut(s)	306, 347, 550, 561, 630, 810, 1104, 1137
FokI	GGATG	3 cut(s)	374, 617, 1261
Fsp4HI	GCNGC	8 cut(s)	306, 347, 550, 561, 630, 810, 1104, 1137
FspBI	CTAG	3 cut(s)	302, 752, 1223
GluI	GCNGC	8 cut(s)	306, 347, 550, 561, 630, 810, 1104, 1137
GsaI	CCCAGC	2 cut(s)	1263, 1343
HaeIII	GGCC	1 cut(s)	259
Hin1II	CATG	3 cut(s)	19, 381, 1057
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HinfI	GANTC	1 cut(s)	225
HphI	GGTGA	1 cut(s)	1225
Hpy166II	GTNNAC	6 cut(s)	208, 248, 275, 768, 1158, 1322
Hpy188I	TCNGA	2 cut(s)	501, 621
Hpy188III	TCNNGA	2 cut(s)	89, 1043
Hpy8I	GTNNAC	6 cut(s)	208, 248, 275, 768, 1158, 1322
HpyAV	CCTTC	5 cut(s)	775, 852, 1123, 1204, 1210
HpyCH4III	ACNGT	2 cut(s)	542, 1384
HpyCH4IV	ACGT	3 cut(s)	63, 333, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1031, 1202
HpyF3I	CTNAG	2 cut(s)	522, 618
HpySE526I	ACGT	3 cut(s)	63, 333, 385
Hsp92II	CATG	3 cut(s)	19, 381, 1057
Kzo9I	GATC	4 cut(s)	434, 472, 574, 1329
LmnI	GCTCC	2 cut(s)	953, 1171
Lsp1109I	GCAGC	6 cut(s)	536, 547, 616, 796, 1090, 1123
LweI	GCATC	5 cut(s)	56, 676, 796, 821, 1292
MaeI	CTAG	3 cut(s)	302, 752, 1223
MaeII	ACGT	3 cut(s)	63, 333, 385
MaeIII	GTNAC	3 cut(s)	516, 932, 1384
MalI	GATC	4 cut(s)	436, 474, 576, 1331
MbiI	CCGCTC	1 cut(s)	956
MboI	GATC	4 cut(s)	434, 472, 574, 1329
MboII	GAAGA	3 cut(s)	620, 860, 908
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	2 cut(s)	250, 277
MluCI	AATT	6 cut(s)	287, 399, 862, 1038, 1095, 1122
MlyI	GAGTC	1 cut(s)	234
Mph1103I	ATGCAT	3 cut(s)	379, 457, 669
MseI	TTAA	3 cut(s)	195, 336, 1179
MslI	CAYNNNNRTG	3 cut(s)	253, 372, 603
MspR9I	CCNGG	1 cut(s)	1145
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	1145
MwoI	GCNNNNNNNGC	2 cut(s)	1031, 1202
NdeI	CATATG	2 cut(s)	70, 982
NdeII	GATC	4 cut(s)	434, 472, 574, 1329
NlaIII	CATG	3 cut(s)	19, 381, 1057
NlaIV	GGNNCC	1 cut(s)	741
NmeAIII	GCCGAG	1 cut(s)	285
NsiI	ATGCAT	3 cut(s)	379, 457, 669
OliI	CACNNNNGTG	1 cut(s)	253
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	8 cut(s)	307, 348, 551, 562, 631, 811, 1105, 1138
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	1143
PspEI	GGTNACC	1 cut(s)	516
PspFI	CCCAGC	2 cut(s)	1259, 1339
PspGI	CCWGG	1 cut(s)	1143
PspN4I	GGNNCC	1 cut(s)	741
PsuI	RGATCY	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
RseI	CAYNNNNRTG	3 cut(s)	253, 372, 603
SaqAI	TTAA	3 cut(s)	195, 336, 1179
SatI	GCNGC	8 cut(s)	306, 347, 550, 561, 630, 810, 1104, 1137
Sau3AI	GATC	4 cut(s)	434, 472, 574, 1329
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	1145
SduI	GDGCHC	2 cut(s)	250, 277
SfaNI	GCATC	5 cut(s)	56, 676, 796, 821, 1292
SmiMI	CAYNNNNRTG	3 cut(s)	253, 372, 603
SmlI	CTYRAG	2 cut(s)	87, 719
SmoI	CTYRAG	2 cut(s)	87, 719
Sse9I	AATT	6 cut(s)	287, 399, 862, 1038, 1095, 1122
SsiI	CCGC	3 cut(s)	305, 346, 956
SspI	AATATT	1 cut(s)	759
SspMI	CTAG	3 cut(s)	302, 752, 1223
StyD4I	CCNGG	1 cut(s)	1143
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	542, 1384
TaiI	ACGT	3 cut(s)	66, 336, 388
TasI	AATT	6 cut(s)	287, 399, 862, 1038, 1095, 1122
TatI	WGTACW	1 cut(s)	674
TauI	GCSGC	2 cut(s)	308, 349
Tru1I	TTAA	3 cut(s)	195, 336, 1179
Tru9I	TTAA	3 cut(s)	195, 336, 1179
TscAI	CASTG	3 cut(s)	258, 831, 1354
TseI	GCWGC	6 cut(s)	549, 560, 629, 809, 1103, 1136
TspDTI	ATGAA	7 cut(s)	24, 129, 280, 621, 723, 977, 1265
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	3 cut(s)	258, 831, 1354
Tth111I	GACNNNGTC	1 cut(s)	62
VneI	GTGCAC	2 cut(s)	246, 273
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	2 cut(s)	287, 862
XmiI	GTMKAC	1 cut(s)	1321
XspI	CTAG	3 cut(s)	302, 752, 1223
ZrmI	AGTACT	1 cut(s)	676
Zsp2I	ATGCAT	3 cut(s)	379, 457, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.