Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508061.1

Orthogroup ID

OG0009595

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1192

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 880 bp

atggcgccaccgcttttaagcttcagagtaacactccctccatttctccgaccaacccgaaccgcccaaccgactccgatccgatcatcctcatcagcatcaccaccaatggaccctcactctcactctcacccgaagccgcgcgtggtggtctgcggcggcggcgtaatcggcgtctgcaccgcttacttcctcgccaaaaacggcgccgtcgtcactctcgtcgagaaatcctccgtcgcctgcgccgcctccggaaaagccggcggattcctcgccctcgactggtgcgacggcgggcccctcgagtccctcgcccgcgccagcttcaatctccaccgctcgctcgctcacgagctcgacggccccgcatcctacggctaccggccgctcaacactctcagcctcaccgtaacggaatcccagacctccaagcctcactccggcaagtccgatttgccggactgggtcgacgggccgggtcggagcccgagaacgatcgggaccaccgcgaccacggcccaggtccacccccagctcttctgccgaaccctaatttccaaagcgattgaggattacggcgtgcaagtggtgattgggaaattggaggaggttggagtcgttgaagggcgagttgaatcggtggtgttggaaggagggcgagctataaactcagacgccgtcgttttggcgcttgggccgtggtgtgggaagtttgagctgttgtcgtctttgttcagagtgtatggtttgaaagctcatagcattgtgttaaggcctaaagaacctgaggccataacacctcatgctcttttcttgagttattacccagctcaaggaggaaagccattggacccagaagtgtatccacgtcccacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0008150 GO:0008152 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0016491 GO:0031410 GO:0031982 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055114 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

293

Amino Acids

31.14

Weight (kDa)

8.71

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67290
fragaria_vesca	FvH4_1g16760
malus_domestica	MD02G1178800.v1.1
prunus_persica	Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1
pyrus_communis	pycom02g14490 pycom13g07680 pycom17g18320
rosa_chinensis	RchiOBHm_Chr2g0106661
rosa_laevigata	RLG00000017527
rosa_multiflora	Rmu_co8508061.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136910
rosa_rugosa	Rorug02G0137200 Rorug02G0137300 Rorug02G0137400 Rorug02G0137500
rosa_samantha	Rh2AG188600 Rh2BG199700 Rh2CG193700 Rh2DG194900
rosa_wichuraiana	Rw2G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 206
AccBSI	CCGCTC	2 cut(s)	342, 391
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	4 cut(s)	142, 144, 321, 512
AccIII	TCCGGA	1 cut(s)	254
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	7
AcyI	GRCGYC	4 cut(s)	5, 174, 207, 678
AfiI	CCNNNNNNNGG	4 cut(s)	285, 443, 707, 836
AgsI	TTSAA	4 cut(s)	331, 626, 638, 754
AjiI	CACGTC	1 cut(s)	872
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	8 cut(s)	21, 327, 358, 538, 665, 721, 758, 833
AluI	AGCT	8 cut(s)	21, 327, 358, 538, 665, 721, 758, 833
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	2 cut(s)	305, 490
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	8 cut(s)	299, 364, 386, 476, 519, 698, 776, 792
ApaI	GGGCCC	1 cut(s)	303
AspLEI	GCGC	6 cut(s)	7, 144, 209, 248, 323, 694
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	4 cut(s)	93, 122, 400, 604
AvaI	CYCGRG	2 cut(s)	305, 490
AvaII	GGWCC	4 cut(s)	112, 504, 526, 853
AxyI	CCTNAGG	1 cut(s)	789
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	2 cut(s)	4, 206
BanII	GRGCYC	3 cut(s)	303, 360, 491
BauI	CACGAG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	360
BceAI	ACGGC	9 cut(s)	194, 220, 310, 379, 394, 534, 595, 665, 685
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	876
BcnI	CCSGG	1 cut(s)	480
BfoI	RGCGCY	3 cut(s)	8, 210, 695
BfuI	GTATCC	1 cut(s)	876
BisI	GCNGC	6 cut(s)	140, 157, 160, 163, 249, 389
BlsI	GCNGC	6 cut(s)	141, 158, 161, 164, 250, 390
Bme1390I	CCNGG	2 cut(s)	480, 524
Bme18I	GGWCC	4 cut(s)	112, 504, 526, 853
BmeT110I	CYCGRG	2 cut(s)	305, 490
BmgBI	CACGTC	1 cut(s)	872
BmiI	GGNNCC	9 cut(s)	6, 114, 208, 301, 302, 367, 488, 505, 855
BmrFI	CCNGG	2 cut(s)	480, 524
BmrI	ACTGGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	107, 380
BmuI	ACTGGG	1 cut(s)	475
BplI	GAGNNNNNCTC	4 cut(s)	18, 50, 218, 250
BpuEI	CTTGAG	2 cut(s)	819, 838
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	4 cut(s)	5, 174, 207, 678
BsaJI	CCNNGG	3 cut(s)	516, 522, 701
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 443, 707, 836
Bse118I	RCCGGY	2 cut(s)	263, 384
Bse1I	ACTGG	2 cut(s)	290, 470
Bse21I	CCTNAGG	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	3 cut(s)	516, 522, 701
BseGI	GGATG	2 cut(s)	86, 371
BseLI	CCNNNNNNNGG	4 cut(s)	285, 443, 707, 836
BseMII	CTCAG	3 cut(s)	415, 687, 780
BseNI	ACTGG	2 cut(s)	290, 470
BseRI	GAGGAG	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	303
BseX3I	CGGCCG	1 cut(s)	386
BseYI	CCCAGC	2 cut(s)	534, 829
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	4 cut(s)	142, 144, 321, 512
Bsh1285I	CGRYCG	2 cut(s)	389, 501
BshFI	GGCC	8 cut(s)	301, 366, 388, 478, 521, 700, 778, 794
BshNI	GGYRCC	2 cut(s)	4, 206
BsiEI	CGRYCG	2 cut(s)	389, 501
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	2 cut(s)	305, 490
BsiSI	CCGG	6 cut(s)	255, 264, 385, 444, 461, 479
BslFI	GGGAC	3 cut(s)	295, 517, 858
BslI	CCNNNNNNNGG	4 cut(s)	285, 443, 707, 836
BsmFI	GGGAC	3 cut(s)	295, 517, 858
BsnI	GGCC	8 cut(s)	301, 366, 388, 478, 521, 700, 778, 794
BsoBI	CYCGRG	2 cut(s)	305, 490
Bsp120I	GGGCCC	1 cut(s)	299
Bsp1286I	GDGCHC	3 cut(s)	303, 360, 491
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	78, 83, 498
BspANI	GGCC	8 cut(s)	301, 366, 388, 478, 521, 700, 778, 794
BspCNI	CTCAG	3 cut(s)	414, 686, 781
BspEI	TCCGGA	1 cut(s)	254
BspFNI	CGCG	4 cut(s)	142, 144, 321, 512
BspLI	GGNNCC	9 cut(s)	6, 114, 208, 301, 302, 367, 488, 505, 855
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	545
BspT107I	GGYRCC	2 cut(s)	4, 206
BsrBI	CCGCTC	2 cut(s)	342, 391
BsrFI	RCCGGY	2 cut(s)	263, 384
BsrI	ACTGG	2 cut(s)	290, 470
BssAI	RCCGGY	2 cut(s)	263, 384
BssECI	CCNNGG	3 cut(s)	516, 522, 701
BssMI	GATC	3 cut(s)	78, 83, 498
BssNI	GRCGYC	4 cut(s)	5, 174, 207, 678
BssSI	CACGAG	1 cut(s)	353
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	545
BstACI	GRCGYC	4 cut(s)	5, 174, 207, 678
BstC8I	GCNNGC	9 cut(s)	244, 265, 299, 319, 325, 344, 348, 584, 663
BstDEI	CTNAG	3 cut(s)	401, 673, 789
BstDSI	CCRYGG	2 cut(s)	516, 701
BstF5I	GGATG	2 cut(s)	86, 371
BstFNI	CGCG	4 cut(s)	142, 144, 321, 512
BstH2I	RGCGCY	3 cut(s)	8, 210, 695
BstHHI	GCGC	6 cut(s)	7, 144, 209, 248, 323, 694
BstKTI	GATC	3 cut(s)	81, 86, 501
BstMBI	GATC	3 cut(s)	78, 83, 498
BstMCI	CGRYCG	2 cut(s)	389, 501
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 171, 248, 518
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	478, 522
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	4 cut(s)	142, 144, 321, 512
BstZI	CGGCCG	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	876
BsuRI	GGCC	8 cut(s)	301, 366, 388, 478, 521, 700, 778, 794
BtgI	CCRYGG	2 cut(s)	516, 701
BtrI	CACGTC	1 cut(s)	872
BtsCI	GGATG	2 cut(s)	86, 371
Cac8I	GCNNGC	9 cut(s)	244, 265, 299, 319, 325, 344, 348, 584, 663
CfoI	GCGC	6 cut(s)	7, 144, 209, 248, 323, 694
Cfr10I	RCCGGY	2 cut(s)	263, 384
CseI	GACGC	2 cut(s)	163, 686
CviAII	CATG	1 cut(s)	806
DdeI	CTNAG	3 cut(s)	401, 673, 789
DinI	GGCGCC	2 cut(s)	6, 208
DpnI	GATC	3 cut(s)	80, 85, 500
DpnII	GATC	3 cut(s)	78, 83, 498
EaeI	YGGCCR	1 cut(s)	386
EagI	CGGCCG	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	358
EclXI	CGGCCG	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	778
Eco24I	GRGCYC	3 cut(s)	303, 360, 491
Eco47I	GGWCC	4 cut(s)	112, 504, 526, 853
Eco52I	CGGCCG	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	7
Eco81I	CCTNAGG	1 cut(s)	789
Eco88I	CYCGRG	2 cut(s)	305, 490
EcoICRI	GAGCTC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	522
EcoT38I	GRGCYC	3 cut(s)	303, 360, 491
EgeI	GGCGCC	2 cut(s)	6, 208
EheI	GGCGCC	2 cut(s)	6, 208
FaeI	CATG	1 cut(s)	809
FaiI	YATR	5 cut(s)	668, 747, 762, 797, 807
FaqI	GGGAC	3 cut(s)	295, 517, 858
FatI	CATG	1 cut(s)	805
FauI	CCCGC	3 cut(s)	290, 326, 376
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	6 cut(s)	140, 157, 160, 163, 249, 389
FokI	GGATG	2 cut(s)	73, 358
FriOI	GRGCYC	3 cut(s)	303, 360, 491
Fsp4HI	GCNGC	6 cut(s)	140, 157, 160, 163, 249, 389
GlaI	GCGC	6 cut(s)	6, 143, 208, 247, 322, 693
GluI	GCNGC	6 cut(s)	140, 157, 160, 163, 249, 389
GsaI	CCCAGC	2 cut(s)	538, 833
HaeII	RGCGCY	3 cut(s)	8, 210, 695
HaeIII	GGCC	8 cut(s)	301, 366, 388, 478, 521, 700, 778, 794
HapII	CCGG	6 cut(s)	255, 264, 385, 444, 461, 479
HgaI	GACGC	2 cut(s)	163, 686
HhaI	GCGC	6 cut(s)	7, 144, 209, 248, 323, 694
Hin1I	GRCGYC	4 cut(s)	5, 174, 207, 678
Hin1II	CATG	1 cut(s)	809
Hin6I	GCGC	6 cut(s)	5, 142, 207, 246, 321, 692
HinP1I	GCGC	6 cut(s)	5, 142, 207, 246, 321, 692
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	6 cut(s)	73, 270, 308, 419, 618, 638
HpaII	CCGG	6 cut(s)	255, 264, 385, 444, 461, 479
HphI	GGTGA	4 cut(s)	93, 122, 400, 604
Hpy166II	GTNNAC	2 cut(s)	472, 529
Hpy188I	TCNGA	8 cut(s)	26, 50, 78, 83, 454, 486, 676, 740
Hpy188III	TCNNGA	5 cut(s)	226, 255, 353, 502, 817
Hpy8I	GTNNAC	2 cut(s)	472, 529
Hpy99I	CGWCG	7 cut(s)	215, 227, 242, 296, 365, 476, 686
HpyAV	CCTTC	2 cut(s)	620, 647
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	2 cut(s)	180, 586
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 171, 248, 518
HpyF3I	CTNAG	3 cut(s)	401, 673, 789
HpySE526I	ACGT	1 cut(s)	871
Hsp92I	GRCGYC	4 cut(s)	5, 174, 207, 678
Hsp92II	CATG	1 cut(s)	809
HspAI	GCGC	6 cut(s)	5, 142, 207, 246, 321, 692
KasI	GGCGCC	2 cut(s)	4, 206
Kpn2I	TCCGGA	1 cut(s)	254
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	78, 83, 498
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	1 cut(s)	486
LweI	GCATC	2 cut(s)	107, 380
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	3 cut(s)	28, 214, 412
MalI	GATC	3 cut(s)	80, 85, 500
MbiI	CCGCTC	2 cut(s)	342, 391
MboI	GATC	3 cut(s)	78, 83, 498
MboII	GAAGA	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	303, 360, 491
MluCI	AATT	2 cut(s)	555, 602
Mly113I	GGCGCC	2 cut(s)	5, 207
MlyI	GAGTC	3 cut(s)	67, 317, 627
MmeI	TCCRAC	4 cut(s)	73, 464, 595, 630
MroI	TCCGGA	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	2 cut(s)	17, 773
MspI	CCGG	6 cut(s)	255, 264, 385, 444, 461, 479
MspR9I	CCNGG	2 cut(s)	480, 524
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	4 cut(s)	142, 144, 321, 512
MwoI	GCNNNNNNNGC	4 cut(s)	162, 171, 248, 518
NaeI	GCCGGC	1 cut(s)	265
NarI	GGCGCC	2 cut(s)	5, 207
NciI	CCSGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	78, 83, 498
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	809
NlaIV	GGNNCC	9 cut(s)	6, 114, 208, 301, 302, 367, 488, 505, 855
NmuCI	GTSAC	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	3 cut(s)	210, 219, 288
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	270, 419, 638
PflFI	GACNNNGTC	2 cut(s)	467, 680
PkrI	GCNGC	6 cut(s)	141, 158, 161, 164, 250, 390
Ple19I	CGATCG	1 cut(s)	501
PleI	GAGTC	3 cut(s)	67, 316, 626
PluTI	GGCGCC	2 cut(s)	8, 210
PpsI	GAGTC	3 cut(s)	67, 316, 626
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	522
PspFI	CCCAGC	2 cut(s)	534, 829
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	9 cut(s)	6, 114, 208, 301, 302, 367, 488, 505, 855
PspOMI	GGGCCC	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	305
PsyI	GACNNNGTC	2 cut(s)	467, 680
PvuI	CGATCG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	17, 773
SatI	GCNGC	6 cut(s)	140, 157, 160, 163, 249, 389
Sau3AI	GATC	3 cut(s)	78, 83, 498
SchI	GAGTC	3 cut(s)	67, 317, 627
ScrFI	CCNGG	2 cut(s)	480, 524
SduI	GDGCHC	3 cut(s)	303, 360, 491
SfaNI	GCATC	2 cut(s)	107, 380
SfoI	GGCGCC	2 cut(s)	6, 208
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	4 cut(s)	112, 504, 526, 853
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	3 cut(s)	305, 817, 834
SmoI	CTYRAG	3 cut(s)	305, 817, 834
Sse9I	AATT	2 cut(s)	555, 602
SseBI	AGGCCT	1 cut(s)	778
SspDI	GGCGCC	2 cut(s)	4, 206
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	478, 522
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	5 cut(s)	225, 282, 306, 360, 471
TasI	AATT	2 cut(s)	555, 602
TauI	GCSGC	6 cut(s)	142, 159, 162, 165, 251, 391
TfiI	GAWTC	3 cut(s)	270, 419, 638
Tru1I	TTAA	2 cut(s)	17, 773
Tru9I	TTAA	2 cut(s)	17, 773
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspGWI	ACGGA	2 cut(s)	226, 431
Tth111I	GACNNNGTC	2 cut(s)	467, 680
VpaK11BI	GGWCC	4 cut(s)	112, 504, 526, 853
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.