Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009595

Physical Location & Seq

Genomic Coordinates Forward (+)

15714473 .. 15715449

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g18320.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGACAATATTAAAAAAAAATAAAAATTGTATTTGTGAATATTACTGTATAGAGTTAGGGCTAGTTTGGTATTGCTGTGCTTTTTTTTTTTTTTTTAAAAAAAACAATTTTATCGAGCGTTTGGTAAACTTTTTTTGTAAAGTGATTTTAACAAAAAAAAAAAAAACGGTAAATATCAATTTACTACCGTCACGTTTCGTGGTTTTCAACATTTATCTCATGCATCCGTTAGTCAAACTGTTAAGTTTACCGTTAACTGATGACGTGGCGCCCATGTGGACAATGACTGGGCGCCACAACCCCTTTTTTCCTTCCCCATTTATCTTCCTCACTGGAAAAGGGGTTGGATTCCTCGCCCTCGATTGGTGCGATGGTAAGCCCCTTGCGTCCCTCACCCACGCCAGCTTCCATCTCCACTCCCAAGGGGCCCACCCCTTTATTTGTGTCCCCCACCCTGTGACCCTCTTCTTTCTCTCCTTCATTCTTTCTTCTCTTAACTCTCTATGCACTGTCTCATTCTACCCGAGCACCATACACAAGCATGCAGACCACCCACCTTTTTGTAGCCTCGATGAACCCATCACCCTCGAGACTCCCTCGTCAGGATCTTCAACACGTCTAAGTCTCTCTCTTCCTTTTGCCACGGCAAGCACCGAGAGGGTGCAATGGTGCACTCCGTCGAACTCCACCATTTGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0008150 GO:0008152 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0016491 GO:0031410 GO:0031982 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055114 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

235

Amino Acids

26.53

Weight (kDa)

8.82

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67290
fragaria_vesca	FvH4_1g16760
malus_domestica	MD02G1178800.v1.1
prunus_persica	Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1 Prupe.6G229100_v2.0.a1
pyrus_communis	pycom02g14490 pycom13g07680 pycom17g18320
rosa_chinensis	RchiOBHm_Chr2g0106661
rosa_laevigata	RLG00000017527
rosa_multiflora	Rmu_co8508061.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136910
rosa_rugosa	Rorug02G0137200 Rorug02G0137300 Rorug02G0137400 Rorug02G0137500
rosa_samantha	Rh2AG188600 Rh2BG199700 Rh2CG193700 Rh2DG194900
rosa_wichuraiana	Rw2G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	601
AccB1I	GGYRCC	2 cut(s)	271, 294
AclWI	GGATC	1 cut(s)	616
AcyI	GRCGYC	2 cut(s)	272, 295
AdeI	CACNNNGTG	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	366, 605
AflIII	ACRYGT	1 cut(s)	617
AgsI	TTSAA	2 cut(s)	211, 615
AjiI	CACGTC	2 cut(s)	268, 620
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw21I	GWGCWC	2 cut(s)	533, 677
Alw26I	GTCTC	3 cut(s)	520, 587, 632
Alw44I	GTGCAC	1 cut(s)	673
AlwI	GGATC	1 cut(s)	616
Ama87I	CYCGRG	2 cut(s)	526, 590
AoxI	GGCC	1 cut(s)	429
ApaI	GGGCCC	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	673
AspLEI	GCGC	2 cut(s)	274, 297
AspS9I	GGNCC	2 cut(s)	429, 430
AsuHPI	GGTGA	2 cut(s)	388, 577
AvaI	CYCGRG	2 cut(s)	526, 590
BaeGI	GKGCMC	2 cut(s)	433, 677
BanI	GGYRCC	2 cut(s)	271, 294
BanII	GRGCYC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	533, 677
BccI	CCATC	3 cut(s)	368, 420, 590
BceAI	ACGGC	1 cut(s)	663
BcoDI	GTCTC	3 cut(s)	520, 587, 632
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	2 cut(s)	275, 298
BmeT110I	CYCGRG	2 cut(s)	526, 590
BmgBI	CACGTC	2 cut(s)	268, 620
BmgT120I	GGNCC	2 cut(s)	429, 430
BmiI	GGNNCC	4 cut(s)	273, 296, 430, 431
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BsaHI	GRCGYC	2 cut(s)	272, 295
BsaJI	CCNNGG	2 cut(s)	424, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 605
Bse1I	ACTGG	2 cut(s)	295, 340
Bse3DI	GCAATG	1 cut(s)	674
BseDI	CCNNGG	2 cut(s)	424, 645
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	366, 605
BseMI	GCAATG	1 cut(s)	674
BseNI	ACTGG	2 cut(s)	295, 340
BseSI	GKGCMC	2 cut(s)	433, 677
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	2 cut(s)	271, 294
BsiHKAI	GWGCWC	2 cut(s)	533, 677
BsiHKCI	CYCGRG	2 cut(s)	526, 590
BslFI	GGGAC	2 cut(s)	376, 434
BslI	CCNNNNNNNGG	2 cut(s)	366, 605
BsmAI	GTCTC	3 cut(s)	520, 587, 632
BsmFI	GGGAC	2 cut(s)	376, 434
BsnI	GGCC	1 cut(s)	431
BsoBI	CYCGRG	2 cut(s)	526, 590
Bsp120I	GGGCCC	1 cut(s)	429
Bsp1286I	GDGCHC	3 cut(s)	433, 533, 677
Bsp143I	GATC	1 cut(s)	608
BspANI	GGCC	1 cut(s)	431
BspLI	GGNNCC	4 cut(s)	273, 296, 430, 431
BspPI	GGATC	1 cut(s)	616
BspT107I	GGYRCC	2 cut(s)	271, 294
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	2 cut(s)	295, 340
BssECI	CCNNGG	2 cut(s)	424, 645
BssMI	GATC	1 cut(s)	608
BssNI	GRCGYC	2 cut(s)	272, 295
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	6 cut(s)	50, 172, 192, 243, 255, 514
Bst6I	CTCTTC	2 cut(s)	473, 639
BstACI	GRCGYC	2 cut(s)	272, 295
BstC8I	GCNNGC	3 cut(s)	406, 546, 652
BstDEI	CTNAG	1 cut(s)	623
BstDSI	CCRYGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	226
BstH2I	RGCGCY	2 cut(s)	275, 298
BstHHI	GCGC	2 cut(s)	274, 297
BstKTI	GATC	1 cut(s)	611
BstMAI	GTCTC	3 cut(s)	520, 587, 632
BstMBI	GATC	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	548
BstSLI	GKGCMC	2 cut(s)	433, 677
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	431
BtgI	CCRYGG	1 cut(s)	645
BtgZI	GCGATG	1 cut(s)	387
BtrI	CACGTC	2 cut(s)	268, 620
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	333, 510
Cac8I	GCNNGC	3 cut(s)	406, 546, 652
CfoI	GCGC	2 cut(s)	274, 297
Cfr13I	GGNCC	2 cut(s)	429, 430
CseI	GACGC	1 cut(s)	378
CviAII	CATG	3 cut(s)	223, 277, 545
CviJI	RGCY	5 cut(s)	64, 382, 408, 431, 570
CviKI_1	RGCY	5 cut(s)	64, 382, 408, 431, 570
DdeI	CTNAG	1 cut(s)	623
DinI	GGCGCC	2 cut(s)	273, 296
DpnI	GATC	1 cut(s)	610
DpnII	GATC	1 cut(s)	608
DraI	TTTAAA	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	473, 639
EarI	CTCTTC	2 cut(s)	473, 639
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	433
Eco88I	CYCGRG	2 cut(s)	526, 590
EcoO109I	RGGNCCY	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	433
EgeI	GGCGCC	2 cut(s)	273, 296
EheI	GGCGCC	2 cut(s)	273, 296
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	3 cut(s)	226, 280, 548
FaiI	YATR	6 cut(s)	53, 224, 278, 508, 536, 546
FaqI	GGGAC	2 cut(s)	376, 434
FatI	CATG	3 cut(s)	222, 276, 544
FokI	GGATG	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	433
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	273, 296
HaeII	RGCGCY	2 cut(s)	275, 298
HaeIII	GGCC	1 cut(s)	431
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	2 cut(s)	274, 297
Hin1I	GRCGYC	2 cut(s)	272, 295
Hin1II	CATG	3 cut(s)	226, 280, 548
Hin6I	GCGC	2 cut(s)	272, 295
HinP1I	GCGC	2 cut(s)	272, 295
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	351, 595
HpaI	GTTAAC	1 cut(s)	258
HphI	GGTGA	2 cut(s)	388, 577
Hpy166II	GTNNAC	5 cut(s)	130, 251, 258, 282, 675
Hpy188III	TCNNGA	2 cut(s)	592, 606
Hpy8I	GTNNAC	5 cut(s)	130, 251, 258, 282, 675
Hpy99I	CGWCG	1 cut(s)	685
HpyAV	CCTTC	2 cut(s)	324, 490
HpyCH4III	ACNGT	6 cut(s)	50, 172, 192, 243, 255, 514
HpyCH4IV	ACGT	3 cut(s)	196, 267, 619
HpyCH4V	TGCA	5 cut(s)	226, 510, 548, 667, 675
HpyF3I	CTNAG	1 cut(s)	623
HpySE526I	ACGT	3 cut(s)	196, 267, 619
Hsp92I	GRCGYC	2 cut(s)	272, 295
Hsp92II	CATG	3 cut(s)	226, 280, 548
HspAI	GCGC	2 cut(s)	272, 295
KasI	GGCGCC	2 cut(s)	271, 294
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	608
LpnPI	CCDG	5 cut(s)	276, 321, 418, 471, 591
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	3 cut(s)	196, 267, 619
MaeIII	GTNAC	2 cut(s)	192, 460
MalI	GATC	1 cut(s)	610
MboI	GATC	1 cut(s)	608
MboII	GAAGA	6 cut(s)	16, 319, 460, 483, 603, 626
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	3 cut(s)	433, 533, 677
MluCI	AATT	3 cut(s)	28, 109, 181
Mly113I	GGCGCC	2 cut(s)	272, 295
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	9 cut(s)	341, 365, 371, 404, 476, 581, 599, 610, 654
Mph1103I	ATGCAT	1 cut(s)	228
MseI	TTAA	6 cut(s)	14, 99, 152, 245, 257, 498
MslI	CAYNNNNRTG	1 cut(s)	543
NarI	GGCGCC	2 cut(s)	272, 295
NdeII	GATC	1 cut(s)	608
NlaIII	CATG	3 cut(s)	226, 280, 548
NlaIV	GGNNCC	4 cut(s)	273, 296, 430, 431
NmuCI	GTSAC	2 cut(s)	192, 460
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	351
PleI	GAGTC	1 cut(s)	589
PluTI	GGCGCC	2 cut(s)	275, 298
PpsI	GAGTC	1 cut(s)	589
PspN4I	GGNNCC	4 cut(s)	273, 296, 430, 431
PspOMI	GGGCCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	429, 430
PsuI	RGATCY	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	6 cut(s)	14, 99, 152, 245, 257, 498
Sau3AI	GATC	1 cut(s)	608
Sau96I	GGNCC	2 cut(s)	429, 430
SchI	GAGTC	1 cut(s)	589
SduI	GDGCHC	3 cut(s)	433, 533, 677
SetI	ASST	5 cut(s)	199, 270, 410, 562, 622
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	2 cut(s)	273, 296
Sfr274I	CTCGAG	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SphI	GCATGC	1 cut(s)	548
Sse9I	AATT	3 cut(s)	28, 109, 181
SspDI	GGCGCC	2 cut(s)	271, 294
SspI	AATATT	2 cut(s)	12, 44
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	6 cut(s)	50, 172, 192, 243, 255, 514
TaiI	ACGT	3 cut(s)	199, 270, 622
TaqI	TCGA	5 cut(s)	117, 363, 573, 591, 683
TasI	AATT	3 cut(s)	28, 109, 181
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	6 cut(s)	14, 99, 152, 245, 257, 498
Tru9I	TTAA	6 cut(s)	14, 99, 152, 245, 257, 498
TscAI	CASTG	2 cut(s)	340, 517
TseFI	GTSAC	2 cut(s)	192, 460
Tsp45I	GTSAC	2 cut(s)	192, 460
TspDTI	ATGAA	3 cut(s)	17, 472, 591
TspGWI	ACGGA	2 cut(s)	219, 669
TspRI	CASTG	2 cut(s)	340, 517
VneI	GTGCAC	1 cut(s)	673
XceI	RCATGY	1 cut(s)	548
XhoI	CTCGAG	1 cut(s)	590
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.