Rorug02G0137500

Oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009595
Physical Location & Seq
Reverse (-)
12115971 .. 12116503
533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0137500.1

Sequence Viewer

Length: 351 bp
ATGCGTCCAGGTCGAATGGATGTGCACATTCACTTGTCATATTGCACTCCAAGTGGGTTCAGAACCTTGGCCTCTAACTACCTTGGCATTCATGAAACCAACACTCATCACCTCTGTGGAGAAATTGAAGGCTTAATAGAGAGTGCAGAGGTCACCCCTGCAGTTGTAGCCAAGGAGCTTATGAAGAGTAATGATACCGATGTTGTTCTTGATGGGCTCGTCAAGTTCCTCAAAGAAAAGAAGGTCAAGATTGATAAAGAGAAGTTAAAAAAGGCTAAAAAAGCCGATGAGGAAGGGACTAAGAAAGCAGAGAAGCAGGAAAGGGAGGAGGATGCAAACAAAAACTGCTAG

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

6.96

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_At3g28540 PF25568 15 - 85 1.6e-20 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 7
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 23
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 101, 145
BaeGI GKGCMC 1 cut(s) 27
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 9
BfaI CTAG 1 cut(s) 349
BfmI CTRYAG 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 66, 82, 171
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 66, 82, 171
BseGI GGATG 2 cut(s) 25, 337
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 27, 219
BspANI GGCC 1 cut(s) 71
BspHI TCATGA 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 163
BssECI CCNNGG 3 cut(s) 66, 82, 171
BssT1I CCWWGG 3 cut(s) 66, 82, 171
Bst2UI CCWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 300
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 2 cut(s) 25, 337
BstMWI GCNNNNNNNGC 2 cut(s) 167, 281
BstNI CCWGG 1 cut(s) 9
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 25, 337
CciI TCATGA 1 cut(s) 91
CviAII CATG 1 cut(s) 92
CviJI RGCY 7 cut(s) 71, 132, 170, 178, 217, 275, 284
CviKI_1 RGCY 7 cut(s) 71, 132, 170, 178, 217, 275, 284
DdeI CTNAG 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 3 cut(s) 66, 82, 171
Eco24I GRGCYC 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 66, 82, 171
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 3 cut(s) 66, 82, 171
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 40, 93, 182
FaqI GGGAC 1 cut(s) 310
FatI CATG 1 cut(s) 91
FokI GGATG 2 cut(s) 32, 344
FriOI GRGCYC 1 cut(s) 219
FspBI CTAG 1 cut(s) 349
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 95
HphI GGTGA 2 cut(s) 101, 145
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 3 cut(s) 92, 209, 247
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 122, 235, 287
HpyCH4V TGCA 5 cut(s) 25, 45, 146, 161, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 281
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 95
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 3 cut(s) 21, 171, 302
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 151
MboII GAAGA 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 27, 219
MluCI AATT 1 cut(s) 123
MnlI CCTC 7 cut(s) 82, 122, 142, 239, 283, 319, 322
MseI TTAA 2 cut(s) 134, 266
MslI CAYNNNNRTG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 167, 281
NlaIII CATG 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 151
OliI CACNNNNGTG 1 cut(s) 114
PagI TCATGA 1 cut(s) 91
PctI GAATGC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 7
PspEI GGTNACC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 7
PstI CTGCAG 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 134, 266
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 2 cut(s) 27, 219
SetI ASST 7 cut(s) 13, 68, 84, 114, 153, 180, 246
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 123
SspMI CTAG 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 3 cut(s) 66, 82, 171
TaqI TCGA 1 cut(s) 13
TasI AATT 1 cut(s) 123
Tru1I TTAA 2 cut(s) 134, 266
Tru9I TTAA 2 cut(s) 134, 266
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 80, 108, 197
VneI GTGCAC 1 cut(s) 23
XspI CTAG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.