Prupe.6G247100_v2.0.a1

Pectate lyase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
24357157 .. 24360301
3145 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G247100.1

Sequence Viewer

Length: 1128 bp
ATGGGCAACTCCCACGGCCACCGTAAACGCCGTAACGGCCCTGTCTCCAGTAAAACGGACAATTCGGGCTTTAAATATGGTCCGTCAGATCAATCAGCCCAAATCCCGAGCTCGTCAGCTAAGAAGACCAGCATGGTGGCCTTGCCGTACGCTCATGTCGACGCGAGCTTGCGAGCCCTCGCTGCTCAGGCCGAAGGCTTCGGCCGCCTCGCAATTGGTGGCCTCCGCGGTGCCCTTTACCACGTCACCACTCTAGCTGATGATGGTCCTGGGTCACTTAGGGACGGAAGTCGTAAGAAAGAACCACTTTGGATTGTCTTTGAAATTTCAGGCACTATCCATCTCTCATCTTACTTGAATGTGTCATCGTATAAGACTATAGATGGCCGGGGTCAGAGGATTAAACTTACAGGGAAGGGGTTGAGGCTGAAGGAATGTGAGCATGTGATTGTATGCAATTTAGAGTTTGAAGGTGGTAGAGGGCCAGATGTTGATGGCATTCAAATAAAACCCAATTCCAAGCACATATGGATAGATCGGTGCAGCCTTCGTGATTATGATGACGGGCTTATAGATATCACCAGGGGAAGCACAGATATTACAATTTCGAGGTGCCATTTTTCACAGCATGATAAGACAATGCTAATTGGATCAGACCCCTCTCATATTGATGACAGATGCATCCGGGTTACCATTCACCACTGTTTTTTCGATGCGACCCGACAGCGGCATCCTCGTGTCAGATTTGCGAAAGTACATCTATATAACAATTACACCCGAAACTGGGGCATATATGCTGTTTGTGCCAGTGTAGAATCGCAGATATTCTCTGAATGCAATATATATGAAGCGGGACAGAAGAAAGTGGCATTTAAGTACCTTACGGAGAAGGCAGCGGACAAGGAGGTGGCAATGACTGGCCACATTAAGTCTGAAGGGGACTTATTTATAACTGGAACTCAAGCTGGATTAACGCCCACGGGTGTCGAACACAGCATGTTTCATCCTAGCCAACACTATCAGACATTTACGGTAGGACCTCCCACTGATGATCTTAAACATGTTCTCCAACATTGTACAGGATGGCAGTCTGTTCCACGGCCAGCTGATCAGACAGGAGTCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

41.47

Weight (kDa)

8.85

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 950
AccB1I GGYRCC 2 cut(s) 230, 612
AccI GTMKAC 1 cut(s) 159
AccII CGCG 3 cut(s) 164, 228, 1124
AciI CCGC 6 cut(s) 205, 226, 228, 727, 851, 896
AclWI GGATC 1 cut(s) 658
AcoI YGGCCR 5 cut(s) 16, 202, 385, 919, 1100
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 449, 954
AfaI GTAC 4 cut(s) 149, 756, 878, 1078
AfiI CCNNNNNNNGG 3 cut(s) 726, 783, 784
AflIII ACRYGT 1 cut(s) 1060
AgsI TTSAA 4 cut(s) 323, 358, 470, 503
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 2 cut(s) 268, 581
AluBI AGCT 6 cut(s) 111, 119, 168, 257, 965, 1106
AluI AGCT 6 cut(s) 111, 119, 168, 257, 965, 1106
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 658
Ama87I CYCGRG 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 182, 543, 893
ApoI RAATTY 1 cut(s) 324
AspS9I GGNCC 5 cut(s) 38, 80, 266, 482, 1037
AsuC2I CCSGG 2 cut(s) 389, 686
AsuHPI GGTGA 3 cut(s) 238, 571, 689
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 3 cut(s) 80, 266, 1037
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 921
BanI GGYRCC 2 cut(s) 230, 612
BanII GRGCYC 2 cut(s) 113, 178
BauI CACGAG 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 169, 555, 905
BccI CCATC 5 cut(s) 257, 348, 377, 488, 1077
BceAI ACGGC 5 cut(s) 15, 31, 52, 130, 1115
BciT130I CCWGG 2 cut(s) 270, 583
BclI TGATCA 1 cut(s) 1108
BcnI CCSGG 2 cut(s) 389, 686
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 2 cut(s) 254, 1008
BfmI CTRYAG 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 5 cut(s) 183, 205, 544, 728, 894
BlsI GCNGC 5 cut(s) 184, 206, 545, 729, 895
Bme1390I CCNGG 4 cut(s) 270, 389, 583, 686
Bme18I GGWCC 3 cut(s) 80, 266, 1037
BmeT110I CYCGRG 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 5 cut(s) 38, 80, 266, 482, 1037
BmiI GGNNCC 2 cut(s) 232, 614
BmrFI CCNGG 4 cut(s) 270, 389, 583, 686
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 4 cut(s) 668, 690, 703, 739
BmuI ACTGGG 1 cut(s) 793
BoxI GACNNNNGTC 2 cut(s) 288, 1118
BpiI GAAGAC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 945
BpuMI CCSGG 2 cut(s) 389, 686
BsaJI CCNNGG 7 cut(s) 13, 226, 269, 388, 582, 978, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 1050, 1080
Bsc4I CCNNNNNNNGG 3 cut(s) 726, 783, 784
Bse1I ACTGG 5 cut(s) 48, 788, 807, 922, 958
Bse3DI GCAATG 1 cut(s) 918
BseBI CCWGG 2 cut(s) 270, 583
BseDI CCNNGG 7 cut(s) 13, 226, 269, 388, 582, 978, 1097
BseGI GGATG 4 cut(s) 681, 730, 1003, 1088
BseLI CCNNNNNNNGG 3 cut(s) 726, 783, 784
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 5 cut(s) 48, 788, 807, 922, 958
BseSI GKGCMC 1 cut(s) 235
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 3 cut(s) 169, 555, 905
BsgI GTGCAG 1 cut(s) 562
Bsh1236I CGCG 3 cut(s) 164, 228, 1124
Bsh1285I CGRYCG 1 cut(s) 205
BshNI GGYRCC 2 cut(s) 230, 612
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 388, 685
BsiWI CGTACG 1 cut(s) 147
BslFI GGGAC 3 cut(s) 296, 867, 953
BslI CCNNNNNNNGG 3 cut(s) 726, 783, 784
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 3 cut(s) 296, 867, 953
BsmI GAATGC 2 cut(s) 498, 839
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 3 cut(s) 113, 178, 235
Bsp1407I TGTACA 1 cut(s) 1076
Bsp143I GATC 5 cut(s) 88, 535, 650, 1051, 1108
BspACI CCGC 6 cut(s) 205, 226, 228, 727, 851, 896
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 3 cut(s) 164, 228, 1124
BspLI GGNNCC 2 cut(s) 232, 614
BspPI GGATC 1 cut(s) 658
BspT107I GGYRCC 2 cut(s) 230, 612
BsrDI GCAATG 1 cut(s) 918
BsrGI TGTACA 1 cut(s) 1076
BsrI ACTGG 5 cut(s) 48, 788, 807, 922, 958
BssECI CCNNGG 7 cut(s) 13, 226, 269, 388, 582, 978, 1097
BssMI GATC 5 cut(s) 88, 535, 650, 1051, 1108
BssSI CACGAG 1 cut(s) 735
Bst2BI CACGAG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 270, 583
Bst4CI ACNGT 3 cut(s) 23, 704, 1033
BstAUI TGTACA 1 cut(s) 1076
BstC8I GCNNGC 4 cut(s) 166, 170, 174, 1104
BstDEI CTNAG 3 cut(s) 120, 186, 278
BstDSI CCRYGG 4 cut(s) 13, 226, 978, 1097
BstEII GGTNACC 1 cut(s) 688
BstF5I GGATG 4 cut(s) 681, 730, 1003, 1088
BstFNI CGCG 3 cut(s) 164, 228, 1124
BstKTI GATC 5 cut(s) 91, 538, 653, 1054, 1111
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 5 cut(s) 88, 535, 650, 1051, 1108
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 5 cut(s) 36, 182, 188, 204, 803
BstNI CCWGG 2 cut(s) 270, 583
BstNSI RCATGY 3 cut(s) 446, 1000, 1064
BstPAI GACNNNNGTC 2 cut(s) 288, 1118
BstPI GGTNACC 1 cut(s) 688
BstSCI CCNGG 4 cut(s) 268, 387, 581, 684
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 3 cut(s) 164, 228, 1124
BstV1I GCAGC 3 cut(s) 169, 555, 905
BstV2I GAAGAC 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 136
BstZI CGGCCG 1 cut(s) 202
BtgI CCRYGG 4 cut(s) 13, 226, 978, 1097
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 4 cut(s) 681, 730, 1003, 1088
BtsIMutI CAGTG 3 cut(s) 700, 814, 1044
Cac8I GCNNGC 4 cut(s) 166, 170, 174, 1104
Cfr13I GGNCC 5 cut(s) 38, 80, 266, 482, 1037
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 1 cut(s) 170
Csp6I GTAC 4 cut(s) 148, 755, 877, 1077
CviAII CATG 6 cut(s) 133, 155, 443, 629, 997, 1061
CviQI GTAC 4 cut(s) 148, 755, 877, 1077
DdeI CTNAG 3 cut(s) 120, 186, 278
DpnI GATC 5 cut(s) 90, 537, 652, 1053, 1110
DpnII GATC 5 cut(s) 88, 535, 650, 1051, 1108
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 5 cut(s) 16, 202, 385, 919, 1100
EagI CGGCCG 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 111
EclXI CGGCCG 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 113, 178
Eco32I GATATC 1 cut(s) 577
Eco47I GGWCC 3 cut(s) 80, 266, 1037
Eco52I CGGCCG 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 111
Eco57I CTGAAG 2 cut(s) 449, 954
Eco88I CYCGRG 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 1037
EcoO65I GGTNACC 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 268, 581
EcoRV GATATC 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 683
EcoT38I GRGCYC 2 cut(s) 113, 178
FaeI CATG 6 cut(s) 136, 158, 446, 632, 1000, 1064
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 3 cut(s) 296, 867, 953
FatI CATG 6 cut(s) 132, 154, 442, 628, 996, 1060
FauI CCCGC 1 cut(s) 844
FauNDI CATATG 1 cut(s) 527
FbaI TGATCA 1 cut(s) 1108
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 183, 205, 544, 728, 894
FokI GGATG 4 cut(s) 668, 717, 990, 1095
FriOI GRGCYC 2 cut(s) 113, 178
Fsp4HI GCNGC 5 cut(s) 183, 205, 544, 728, 894
FspBI CTAG 2 cut(s) 254, 1008
GluI GCNGC 5 cut(s) 183, 205, 544, 728, 894
GsuI CTGGAG 1 cut(s) 31
HapII CCGG 2 cut(s) 388, 685
HgaI GACGC 1 cut(s) 170
Hin1II CATG 6 cut(s) 136, 158, 446, 632, 1000, 1064
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 2 cut(s) 815, 1119
HpaII CCGG 2 cut(s) 388, 685
HphI GGTGA 3 cut(s) 238, 571, 689
Hpy166II GTNNAC 2 cut(s) 26, 160
Hpy188I TCNGA 8 cut(s) 88, 396, 655, 743, 832, 934, 1023, 1113
Hpy188III TCNNGA 2 cut(s) 106, 551
Hpy8I GTNNAC 2 cut(s) 26, 160
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 7 cut(s) 188, 409, 424, 464, 557, 883, 929
HpyCH4III ACNGT 3 cut(s) 23, 704, 1033
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 456, 543, 681, 837
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 182, 188, 204, 803
HpyF3I CTNAG 3 cut(s) 120, 186, 278
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 6 cut(s) 136, 158, 446, 632, 1000, 1064
Ksp22I TGATCA 1 cut(s) 1108
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 5 cut(s) 88, 535, 650, 1051, 1108
Lsp1109I GCAGC 3 cut(s) 169, 555, 905
LweI GCATC 4 cut(s) 668, 690, 703, 739
MaeI CTAG 2 cut(s) 254, 1008
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 4 cut(s) 32, 244, 273, 688
MalI GATC 5 cut(s) 90, 537, 652, 1053, 1110
MboI GATC 5 cut(s) 88, 535, 650, 1051, 1108
MboII GAAGA 2 cut(s) 136, 871
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 3 cut(s) 113, 178, 235
MlsI TGGCCA 1 cut(s) 921
MluCI AATT 8 cut(s) 61, 213, 324, 457, 514, 603, 645, 769
MluNI TGGCCA 1 cut(s) 921
MlyI GAGTC 1 cut(s) 1128
MmeI TCCRAC 1 cut(s) 1093
Mox20I TGGCCA 1 cut(s) 921
Mph1103I ATGCAT 1 cut(s) 683
MscI TGGCCA 1 cut(s) 921
MseI TTAA 6 cut(s) 72, 402, 873, 927, 971, 1056
MslI CAYNNNNRTG 2 cut(s) 669, 735
Msp20I TGGCCA 1 cut(s) 921
MspA1I CMGCKG 4 cut(s) 228, 727, 896, 1106
MspI CCGG 2 cut(s) 388, 685
MspR9I CCNGG 4 cut(s) 270, 389, 583, 686
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 2 cut(s) 498, 839
MvaI CCWGG 2 cut(s) 270, 583
MvnI CGCG 3 cut(s) 164, 228, 1124
MwoI GCNNNNNNNGC 5 cut(s) 36, 182, 188, 204, 803
NciI CCSGG 2 cut(s) 389, 686
NdeI CATATG 1 cut(s) 527
NdeII GATC 5 cut(s) 88, 535, 650, 1051, 1108
NlaIII CATG 6 cut(s) 136, 158, 446, 632, 1000, 1064
NlaIV GGNNCC 2 cut(s) 232, 614
NmuCI GTSAC 2 cut(s) 244, 273
NsiI ATGCAT 1 cut(s) 683
NspI RCATGY 3 cut(s) 446, 1000, 1064
PciI ACATGT 1 cut(s) 1060
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 2 cut(s) 498, 839
PfeI GAWTC 1 cut(s) 815
Pfl23II CGTACG 1 cut(s) 147
PkrI GCNGC 5 cut(s) 184, 206, 545, 729, 895
PleI GAGTC 1 cut(s) 1127
PpsI GAGTC 1 cut(s) 1127
PpuMI RGGWCCY 1 cut(s) 1037
PscI ACATGT 1 cut(s) 1060
PshAI GACNNNNGTC 2 cut(s) 288, 1118
PsiI TTATAA 1 cut(s) 950
Psp124BI GAGCTC 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 1037
Psp6I CCWGG 2 cut(s) 268, 581
PspEI GGTNACC 1 cut(s) 688
PspGI CCWGG 2 cut(s) 268, 581
PspLI CGTACG 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 232, 614
PspPI GGNCC 5 cut(s) 38, 80, 266, 482, 1037
PspPPI RGGWCCY 1 cut(s) 1037
PvuII CAGCTG 1 cut(s) 1106
RsaI GTAC 4 cut(s) 149, 756, 878, 1078
RsaNI GTAC 4 cut(s) 148, 755, 877, 1077
RseI CAYNNNNRTG 2 cut(s) 669, 735
SacI GAGCTC 1 cut(s) 113
SacII CCGCGG 1 cut(s) 229
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 6 cut(s) 72, 402, 873, 927, 971, 1056
SatI GCNGC 5 cut(s) 183, 205, 544, 728, 894
Sau3AI GATC 5 cut(s) 88, 535, 650, 1051, 1108
Sau96I GGNCC 5 cut(s) 38, 80, 266, 482, 1037
SchI GAGTC 1 cut(s) 1128
ScrFI CCNGG 4 cut(s) 270, 389, 583, 686
SduI GDGCHC 3 cut(s) 113, 178, 235
SfaNI GCATC 4 cut(s) 668, 690, 703, 739
SfcI CTRYAG 1 cut(s) 378
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 3 cut(s) 80, 266, 1037
SmiMI CAYNNNNRTG 2 cut(s) 669, 735
SmlI CTYRAG 1 cut(s) 960
SmoI CTYRAG 1 cut(s) 960
Sse9I AATT 8 cut(s) 61, 213, 324, 457, 514, 603, 645, 769
SsiI CCGC 6 cut(s) 205, 226, 228, 727, 851, 896
SspMI CTAG 2 cut(s) 254, 1008
SstI GAGCTC 1 cut(s) 113
StyD4I CCNGG 4 cut(s) 268, 387, 581, 684
TaaI ACNGT 3 cut(s) 23, 704, 1033
TaiI ACGT 1 cut(s) 246
TaqI TCGA 4 cut(s) 159, 608, 711, 987
TasI AATT 8 cut(s) 61, 213, 324, 457, 514, 603, 645, 769
TatI WGTACW 2 cut(s) 754, 1076
TauI GCSGC 2 cut(s) 207, 730
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 6 cut(s) 72, 402, 873, 927, 971, 1056
Tru9I TTAA 6 cut(s) 72, 402, 873, 927, 971, 1056
TscAI CASTG 3 cut(s) 707, 814, 1051
TseFI GTSAC 2 cut(s) 244, 273
TseI GCWGC 3 cut(s) 182, 543, 893
Tsp45I GTSAC 2 cut(s) 244, 273
TspDTI ATGAA 2 cut(s) 861, 992
TspGWI ACGGA 4 cut(s) 71, 72, 300, 899
TspRI CASTG 3 cut(s) 707, 814, 1051
VpaK11BI GGWCC 3 cut(s) 80, 266, 1037
XapI RAATTY 1 cut(s) 324
XceI RCATGY 3 cut(s) 446, 1000, 1064
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 2 cut(s) 254, 1008
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.