Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031461.1

Orthogroup ID

OG0009024

Physical Location & Seq

Genomic Coordinates Forward (+)

68 .. 2606

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031461.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgggcaactcccacggccaccgcaaacaccgtaacgacgcgaaccgccccgtaacgcccaatccaccctttaaatatggtccgtccgatccgcaagcacatatccccagctcagctaagcccaccatggcggtgtccttgccttactctcatgttgactccacccttcgcgccatcgctgcccaagctgaaggctttggccgcttagccatcggcggcctccatggtcctctttaccacgttactactctagccgatgatggtccagggtcacttagggaaggctgtcgaaagaaagagccactttggattgtctttgatatttcgggcactatccatctctcgtcttacttgaatgtgtcgtcacataagacaattgatggccggggtcagaggattaagtttactgggaaggggttgaggctgaaggaatgtgagcatgtgattatatgcaatctagagtttgaaggtggtagaggaccagatgttgatggtattcagataaaaccaaactctaagcacatatggatagaccggtgcagccttcgtgattatgaagacggacttatagatatcaccagatgcagcacggatattacaatttcgaggtgtcatttctcgcagcatgataagacaatgctaatcggagcagacccctctcatgtagatgacagatgcatccgggttacaattcaccactgtttctttgatgggacccgacagcggcatcctcgtgttagattcgccaaagtacatctatacaacaattacacccgaaactggggcatatatgctgtttgtgccagtgtagaatcacagatatactctcaatgcaatatatatgaagcaggacagaagaaaatagcgtttaaataccttacagagaaggcagtggacagggaggcggcaacgactggcttcattaggtcggaaggggacttattcataactggaactcaagcaggattagccaccgagggtggtgaaaattgcatgtttcatcctagccaacactaccagacatggacagtaggacctccagtggatgatctgaaacatgttctccaacattgcaccggatggcagtccattccccggccagctgatcaggcaagtgtagcacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

375

Amino Acids

41.79

Weight (kDa)

8.4

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09540 AT3G09540 AT3G09540
fragaria_vesca	FvH4_6g14680 FvH4_6g14680
malus_domestica	MD04G1117700.v1.1 MD12G1133200.v1.1
prunus_persica	Prupe.6G247100_v2.0.a1
pyrus_communis	pycom04g10760 pycom12g12870
rosa_chinensis	RchiOBHm_Chr3g0467861
rosa_laevigata	RLG00000024471
rosa_multiflora	Rmu_sc0001793.1_g000034 Rmu_sc0031461.1_g000001 Rmu_sc0031462.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413410
rosa_rugosa	Rorug03G0090000
rosa_samantha	Rh3AG138400 Rh3BG159800 Rh3CG159800 Rh3DG160400
rosa_wichuraiana	Rw3G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	41, 171
AciI	CCGC	8 cut(s)	22, 46, 92, 131, 202, 216, 724, 905
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	4 cut(s)	16, 199, 382, 1097
AcuI	CTGAAG	2 cut(s)	210, 446
AfaI	GTAC	1 cut(s)	753
AfiI	CCNNNNNNNGG	4 cut(s)	723, 780, 781, 1095
AflIII	ACRYGT	1 cut(s)	1057
AgeI	ACCGGT	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	355, 467
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	4 cut(s)	111, 116, 188, 1103
AluI	AGCT	4 cut(s)	111, 116, 188, 1103
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	5 cut(s)	16, 199, 217, 382, 1097
ApeKI	GCWGC	4 cut(s)	179, 540, 585, 622
AsiGI	ACCGGT	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	6 cut(s)	80, 227, 263, 479, 714, 1034
AsuC2I	CCSGG	3 cut(s)	386, 683, 1096
AsuHPI	GGTGA	3 cut(s)	568, 686, 995
AvaII	GGWCC	6 cut(s)	80, 227, 263, 479, 714, 1034
BaeGI	GKGCMC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	166, 552, 597, 634
BccI	CCATC	8 cut(s)	182, 218, 254, 345, 374, 485, 704, 1074
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	1105
BcnI	CCSGG	3 cut(s)	386, 683, 1096
BfaI	CTAG	3 cut(s)	251, 458, 1005
BisI	GCNGC	8 cut(s)	180, 202, 217, 541, 586, 623, 725, 906
BlpI	GCTNAGC	3 cut(s)	112, 117, 205
BlsI	GCNGC	8 cut(s)	181, 203, 218, 542, 587, 624, 726, 907
Bme1390I	CCNGG	4 cut(s)	267, 386, 683, 1096
Bme18I	GGWCC	6 cut(s)	80, 227, 263, 479, 714, 1034
BmgT120I	GGNCC	6 cut(s)	80, 227, 263, 479, 714, 1034
BmiI	GGNNCC	2 cut(s)	715, 716
BmrFI	CCNGG	4 cut(s)	267, 386, 683, 1096
BmrI	ACTGGG	2 cut(s)	417, 790
BmsI	GCATC	4 cut(s)	572, 665, 687, 736
BmuI	ACTGGG	2 cut(s)	417, 790
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	1023
Bpu1102I	GCTNAGC	3 cut(s)	112, 117, 205
BpuEI	CTTGAG	1 cut(s)	942
BpuMI	CCSGG	3 cut(s)	386, 683, 1096
BsaJI	CCNNGG	7 cut(s)	13, 126, 223, 266, 385, 975, 1094
BsaWI	WCCGGW	2 cut(s)	534, 1076
BsaXI	ACNNNNNCTCC	2 cut(s)	1047, 1077
Bsc4I	CCNNNNNNNGG	4 cut(s)	723, 780, 781, 1095
Bse118I	RCCGGY	1 cut(s)	534
Bse1I	ACTGG	6 cut(s)	412, 785, 804, 919, 955, 1040
Bse3DI	GCAATG	1 cut(s)	1069
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	7 cut(s)	13, 126, 223, 266, 385, 975, 1094
BseGI	GGATG	5 cut(s)	678, 727, 1000, 1051, 1085
BseLI	CCNNNNNNNGG	4 cut(s)	723, 780, 781, 1095
BseMI	GCAATG	1 cut(s)	1069
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	6 cut(s)	412, 785, 804, 919, 955, 1040
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	166, 552, 597, 634
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	559
Bsh1236I	CGCG	2 cut(s)	41, 171
BshFI	GGCC	5 cut(s)	18, 201, 219, 384, 1099
BshTI	ACCGGT	1 cut(s)	534
BsiSI	CCGG	5 cut(s)	385, 535, 682, 1077, 1096
BslFI	GGGAC	2 cut(s)	727, 950
BslI	CCNNNNNNNGG	4 cut(s)	723, 780, 781, 1095
BsmFI	GGGAC	2 cut(s)	727, 950
BsnI	GGCC	5 cut(s)	18, 201, 219, 384, 1099
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	88, 1048, 1105
Bsp1720I	GCTNAGC	3 cut(s)	112, 117, 205
Bsp19I	CCATGG	2 cut(s)	126, 223
BspACI	CCGC	8 cut(s)	22, 46, 92, 131, 202, 216, 724, 905
BspANI	GGCC	5 cut(s)	18, 201, 219, 384, 1099
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	2 cut(s)	41, 171
BspLI	GGNNCC	2 cut(s)	715, 716
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	1069
BsrFI	RCCGGY	1 cut(s)	534
BsrI	ACTGG	6 cut(s)	412, 785, 804, 919, 955, 1040
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	7 cut(s)	13, 126, 223, 266, 385, 975, 1094
BssMI	GATC	3 cut(s)	88, 1048, 1105
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	2 cut(s)	126, 223
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	4 cut(s)	32, 701, 1030, 1125
BstC8I	GCNNGC	2 cut(s)	96, 1101
BstDEI	CTNAG	5 cut(s)	112, 117, 205, 275, 516
BstDSI	CCRYGG	3 cut(s)	13, 126, 223
BstF5I	GGATG	5 cut(s)	678, 727, 1000, 1051, 1085
BstFNI	CGCG	2 cut(s)	41, 171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	91, 1051, 1108
BstMBI	GATC	3 cut(s)	88, 1048, 1105
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 185, 201, 800, 968, 1109, 1118
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	3 cut(s)	443, 997, 1061
BstSCI	CCNGG	4 cut(s)	265, 384, 681, 1094
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	2 cut(s)	41, 171
BstV1I	GCAGC	4 cut(s)	166, 552, 597, 634
BstV2I	GAAGAC	1 cut(s)	564
BsuRI	GGCC	5 cut(s)	18, 201, 219, 384, 1099
BtgI	CCRYGG	3 cut(s)	13, 126, 223
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	5 cut(s)	678, 727, 1000, 1051, 1085
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	4 cut(s)	697, 811, 897, 1047
Cac8I	GCNNGC	2 cut(s)	96, 1101
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	6 cut(s)	80, 227, 263, 479, 714, 1034
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	752
CspAI	ACCGGT	1 cut(s)	534
CviAII	CATG	9 cut(s)	127, 152, 224, 440, 626, 662, 994, 1023, 1058
CviQI	GTAC	1 cut(s)	752
DdeI	CTNAG	5 cut(s)	112, 117, 205, 275, 516
DpnI	GATC	3 cut(s)	90, 1050, 1107
DpnII	GATC	3 cut(s)	88, 1048, 1105
DraI	TTTAAA	2 cut(s)	73, 871
EaeI	YGGCCR	4 cut(s)	16, 199, 382, 1097
Eco130I	CCWWGG	2 cut(s)	126, 223
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	6 cut(s)	80, 227, 263, 479, 714, 1034
Eco57I	CTGAAG	2 cut(s)	210, 446
EcoO109I	RGGNCCY	2 cut(s)	714, 1034
EcoRII	CCWGG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	126, 223
EcoT22I	ATGCAT	1 cut(s)	680
ErhI	CCWWGG	2 cut(s)	126, 223
FaeI	CATG	9 cut(s)	130, 155, 227, 443, 629, 665, 997, 1026, 1061
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 549, 581
FaqI	GGGAC	2 cut(s)	727, 950
FatI	CATG	9 cut(s)	126, 151, 223, 439, 625, 661, 993, 1022, 1057
FauNDI	CATATG	1 cut(s)	524
FbaI	TGATCA	1 cut(s)	1105
Fnu4HI	GCNGC	8 cut(s)	180, 202, 217, 541, 586, 623, 725, 906
FokI	GGATG	5 cut(s)	665, 714, 987, 1058, 1092
Fsp4HI	GCNGC	8 cut(s)	180, 202, 217, 541, 586, 623, 725, 906
FspBI	CTAG	3 cut(s)	251, 458, 1005
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	8 cut(s)	180, 202, 217, 541, 586, 623, 725, 906
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	1023
HaeIII	GGCC	5 cut(s)	18, 201, 219, 384, 1099
HapII	CCGG	5 cut(s)	385, 535, 682, 1077, 1096
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	9 cut(s)	130, 155, 227, 443, 629, 665, 997, 1026, 1061
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	3 cut(s)	158, 741, 812
HpaII	CCGG	5 cut(s)	385, 535, 682, 1077, 1096
HphI	GGTGA	3 cut(s)	568, 686, 995
Hpy166II	GTNNAC	3 cut(s)	157, 405, 895
Hpy188I	TCNGA	6 cut(s)	88, 393, 501, 647, 931, 1053
Hpy188III	TCNNGA	2 cut(s)	458, 548
Hpy8I	GTNNAC	3 cut(s)	157, 405, 895
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	9 cut(s)	176, 185, 275, 406, 421, 461, 554, 880, 926
HpyCH4III	ACNGT	4 cut(s)	32, 701, 1030, 1125
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	7 cut(s)	453, 540, 585, 678, 834, 993, 1074
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 185, 201, 800, 968, 1109, 1118
HpyF3I	CTNAG	5 cut(s)	112, 117, 205, 275, 516
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	9 cut(s)	130, 155, 227, 443, 629, 665, 997, 1026, 1061
HspAI	GCGC	1 cut(s)	171
KflI	GGGWCCC	1 cut(s)	714
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	3 cut(s)	88, 1048, 1105
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	4 cut(s)	166, 552, 597, 634
LweI	GCATC	4 cut(s)	572, 665, 687, 736
MaeI	CTAG	3 cut(s)	251, 458, 1005
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	6 cut(s)	32, 52, 241, 270, 363, 685
MalI	GATC	3 cut(s)	90, 1050, 1107
MboI	GATC	3 cut(s)	88, 1048, 1105
MboII	GAAGA	2 cut(s)	569, 868
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	5 cut(s)	375, 600, 690, 766, 988
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	909, 1090
Mph1103I	ATGCAT	1 cut(s)	680
MseI	TTAA	3 cut(s)	72, 399, 870
MslI	CAYNNNNRTG	3 cut(s)	131, 666, 732
MspA1I	CMGCKG	2 cut(s)	724, 1103
MspI	CCGG	5 cut(s)	385, 535, 682, 1077, 1096
MspR9I	CCNGG	4 cut(s)	267, 386, 683, 1096
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	2 cut(s)	41, 171
MwoI	GCNNNNNNNGC	7 cut(s)	179, 185, 201, 800, 968, 1109, 1118
NciI	CCSGG	3 cut(s)	386, 683, 1096
NcoI	CCATGG	2 cut(s)	126, 223
NdeI	CATATG	1 cut(s)	524
NdeII	GATC	3 cut(s)	88, 1048, 1105
NlaIII	CATG	9 cut(s)	130, 155, 227, 443, 629, 665, 997, 1026, 1061
NlaIV	GGNNCC	2 cut(s)	715, 716
NmuCI	GTSAC	2 cut(s)	270, 363
NsiI	ATGCAT	1 cut(s)	680
NspI	RCATGY	3 cut(s)	443, 997, 1061
PciI	ACATGT	1 cut(s)	1057
PfeI	GAWTC	2 cut(s)	741, 812
PinAI	ACCGGT	1 cut(s)	534
PkrI	GCNGC	8 cut(s)	181, 203, 218, 542, 587, 624, 726, 907
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	2 cut(s)	714, 1034
PscI	ACATGT	1 cut(s)	1057
Psp5II	RGGWCCY	2 cut(s)	714, 1034
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	715, 716
PspPI	GGNCC	6 cut(s)	80, 227, 263, 479, 714, 1034
PspPPI	RGGWCCY	2 cut(s)	714, 1034
PvuII	CAGCTG	1 cut(s)	1103
RsaI	GTAC	1 cut(s)	753
RsaNI	GTAC	1 cut(s)	752
RseI	CAYNNNNRTG	3 cut(s)	131, 666, 732
SaqAI	TTAA	3 cut(s)	72, 399, 870
SatI	GCNGC	8 cut(s)	180, 202, 217, 541, 586, 623, 725, 906
Sau3AI	GATC	3 cut(s)	88, 1048, 1105
Sau96I	GGNCC	6 cut(s)	80, 227, 263, 479, 714, 1034
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	4 cut(s)	267, 386, 683, 1096
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	4 cut(s)	572, 665, 687, 736
SinI	GGWCC	6 cut(s)	80, 227, 263, 479, 714, 1034
SmiMI	CAYNNNNRTG	3 cut(s)	131, 666, 732
SmlI	CTYRAG	1 cut(s)	957
SmoI	CTYRAG	1 cut(s)	957
Sse9I	AATT	5 cut(s)	375, 600, 690, 766, 988
SsiI	CCGC	8 cut(s)	22, 46, 92, 131, 202, 216, 724, 905
SspMI	CTAG	3 cut(s)	251, 458, 1005
StyD4I	CCNGG	4 cut(s)	265, 384, 681, 1094
StyI	CCWWGG	2 cut(s)	126, 223
TaaI	ACNGT	4 cut(s)	32, 701, 1030, 1125
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	289, 605
TasI	AATT	5 cut(s)	375, 600, 690, 766, 988
TatI	WGTACW	1 cut(s)	751
TauI	GCSGC	4 cut(s)	204, 219, 727, 908
TfiI	GAWTC	2 cut(s)	741, 812
Tru1I	TTAA	3 cut(s)	72, 399, 870
Tru9I	TTAA	3 cut(s)	72, 399, 870
TscAI	CASTG	4 cut(s)	704, 811, 897, 1047
TseFI	GTSAC	2 cut(s)	270, 363
TseI	GCWGC	4 cut(s)	179, 540, 585, 622
Tsp45I	GTSAC	2 cut(s)	270, 363
TspDTI	ATGAA	5 cut(s)	570, 858, 910, 934, 989
TspGWI	ACGGA	3 cut(s)	72, 576, 605
TspRI	CASTG	4 cut(s)	704, 811, 897, 1047
VpaK11BI	GGWCC	6 cut(s)	80, 227, 263, 479, 714, 1034
XbaI	TCTAGA	1 cut(s)	457
XceI	RCATGY	3 cut(s)	443, 997, 1061
XspI	CTAG	3 cut(s)	251, 458, 1005
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.