Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031462.1

Orthogroup ID

OG0009024

Physical Location & Seq

Genomic Coordinates Forward (+)

68 .. 933

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031462.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgggcaactcccacggccaccgcaaacaccgtaacgacgcgaaccgccccgtaacgcccaatccaccctttaaatatggtccgtccgatccgcaagcacatatccccagctcagctaagcccaccatggcggtgtccttgccttactctcatgttgactccacccttcgcgccatcgctgcccaagctgaaggctttggccgcttagccatcggcggcctccatggtcctctttaccacgttactactctagccgatgatggtccagggtcacttagggaaggctgtcgaaagaaagagccactttggattgtctttgatatttcgggcactatccatctctcgtcttacttgaatgtgtcgtcacataagacaattgatggccggggtcagaggattaagtttactgggaaggggttgaggctgaaggaatgtgagcatgtgattatatgcaatctagagtttgaaggtggtagaggaccagatgttgatggtattcagataaaaccaaactctaagcacatatggatagaccggtgcagccttcgtgattatgaagacggacttatagatatcaccagatgcagcaccgatattacaatttcgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

203

Amino Acids

22.33

Weight (kDa)

8.83

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09540 AT3G09540 AT3G09540
fragaria_vesca	FvH4_6g14680 FvH4_6g14680
malus_domestica	MD04G1117700.v1.1 MD12G1133200.v1.1
prunus_persica	Prupe.6G247100_v2.0.a1
pyrus_communis	pycom04g10760 pycom12g12870
rosa_chinensis	RchiOBHm_Chr3g0467861
rosa_laevigata	RLG00000024471
rosa_multiflora	Rmu_sc0001793.1_g000034 Rmu_sc0031461.1_g000001 Rmu_sc0031462.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413410
rosa_rugosa	Rorug03G0090000
rosa_samantha	Rh3AG138400 Rh3BG159800 Rh3CG159800 Rh3DG160400
rosa_wichuraiana	Rw3G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	41, 171
AciI	CCGC	6 cut(s)	22, 46, 92, 131, 202, 216
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	3 cut(s)	16, 199, 382
AcuI	CTGAAG	2 cut(s)	210, 446
AgeI	ACCGGT	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	355, 467
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	3 cut(s)	111, 116, 188
AluI	AGCT	3 cut(s)	111, 116, 188
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	4 cut(s)	16, 199, 217, 382
ApeKI	GCWGC	3 cut(s)	179, 540, 585
AsiGI	ACCGGT	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	4 cut(s)	80, 227, 263, 479
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	4 cut(s)	80, 227, 263, 479
BaeGI	GKGCMC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	3 cut(s)	166, 552, 597
BccI	CCATC	6 cut(s)	182, 218, 254, 345, 374, 485
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	386
BfaI	CTAG	2 cut(s)	251, 458
BisI	GCNGC	5 cut(s)	180, 202, 217, 541, 586
BlpI	GCTNAGC	3 cut(s)	112, 117, 205
BlsI	GCNGC	5 cut(s)	181, 203, 218, 542, 587
Bme1390I	CCNGG	2 cut(s)	267, 386
Bme18I	GGWCC	4 cut(s)	80, 227, 263, 479
BmgT120I	GGNCC	4 cut(s)	80, 227, 263, 479
BmrFI	CCNGG	2 cut(s)	267, 386
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	572
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	564
Bpu1102I	GCTNAGC	3 cut(s)	112, 117, 205
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	5 cut(s)	13, 126, 223, 266, 385
BsaWI	WCCGGW	1 cut(s)	534
Bse118I	RCCGGY	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	5 cut(s)	13, 126, 223, 266, 385
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	412
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	166, 552, 597
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	559
Bsh1236I	CGCG	2 cut(s)	41, 171
BshFI	GGCC	4 cut(s)	18, 201, 219, 384
BshTI	ACCGGT	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	385, 535
BsnI	GGCC	4 cut(s)	18, 201, 219, 384
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	88
Bsp1720I	GCTNAGC	3 cut(s)	112, 117, 205
Bsp19I	CCATGG	2 cut(s)	126, 223
BspACI	CCGC	6 cut(s)	22, 46, 92, 131, 202, 216
BspANI	GGCC	4 cut(s)	18, 201, 219, 384
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	2 cut(s)	41, 171
BspPI	GGATC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	5 cut(s)	13, 126, 223, 266, 385
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	126, 223
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	5 cut(s)	112, 117, 205, 275, 516
BstDSI	CCRYGG	3 cut(s)	13, 126, 223
BstFNI	CGCG	2 cut(s)	41, 171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 185, 201
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	265, 384
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	2 cut(s)	41, 171
BstV1I	GCAGC	3 cut(s)	166, 552, 597
BstV2I	GAAGAC	1 cut(s)	564
BsuRI	GGCC	4 cut(s)	18, 201, 219, 384
BtgI	CCRYGG	3 cut(s)	13, 126, 223
BtgZI	GCGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	4 cut(s)	80, 227, 263, 479
CseI	GACGC	1 cut(s)	47
CspAI	ACCGGT	1 cut(s)	534
CviAII	CATG	4 cut(s)	127, 152, 224, 440
DdeI	CTNAG	5 cut(s)	112, 117, 205, 275, 516
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	3 cut(s)	16, 199, 382
Eco130I	CCWWGG	2 cut(s)	126, 223
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	4 cut(s)	80, 227, 263, 479
Eco57I	CTGAAG	2 cut(s)	210, 446
EcoRII	CCWGG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	126, 223
ErhI	CCWWGG	2 cut(s)	126, 223
FaeI	CATG	4 cut(s)	130, 155, 227, 443
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 549, 581
FatI	CATG	4 cut(s)	126, 151, 223, 439
FauNDI	CATATG	1 cut(s)	524
Fnu4HI	GCNGC	5 cut(s)	180, 202, 217, 541, 586
Fsp4HI	GCNGC	5 cut(s)	180, 202, 217, 541, 586
FspBI	CTAG	2 cut(s)	251, 458
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	5 cut(s)	180, 202, 217, 541, 586
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	18, 201, 219, 384
HapII	CCGG	2 cut(s)	385, 535
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	4 cut(s)	130, 155, 227, 443
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	385, 535
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	157, 405
Hpy188I	TCNGA	3 cut(s)	88, 393, 501
Hpy188III	TCNNGA	2 cut(s)	458, 548
Hpy8I	GTNNAC	2 cut(s)	157, 405
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	7 cut(s)	176, 185, 275, 406, 421, 461, 554
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	453, 540, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 185, 201
HpyF3I	CTNAG	5 cut(s)	112, 117, 205, 275, 516
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	130, 155, 227, 443
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	121, 252, 279, 393, 398, 495, 548, 592
Lsp1109I	GCAGC	3 cut(s)	166, 552, 597
LweI	GCATC	1 cut(s)	572
MaeI	CTAG	2 cut(s)	251, 458
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	5 cut(s)	32, 52, 241, 270, 363
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	569
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	375, 600
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	230, 240, 387, 414, 470, 600
MseI	TTAA	2 cut(s)	72, 399
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	2 cut(s)	385, 535
MspR9I	CCNGG	2 cut(s)	267, 386
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	2 cut(s)	41, 171
MwoI	GCNNNNNNNGC	3 cut(s)	179, 185, 201
NciI	CCSGG	1 cut(s)	386
NcoI	CCATGG	2 cut(s)	126, 223
NdeI	CATATG	1 cut(s)	524
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	4 cut(s)	130, 155, 227, 443
NmuCI	GTSAC	2 cut(s)	270, 363
NspI	RCATGY	1 cut(s)	443
PinAI	ACCGGT	1 cut(s)	534
PkrI	GCNGC	5 cut(s)	181, 203, 218, 542, 587
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	4 cut(s)	80, 227, 263, 479
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	72, 399
SatI	GCNGC	5 cut(s)	180, 202, 217, 541, 586
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	4 cut(s)	80, 227, 263, 479
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	267, 386
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	6 cut(s)	113, 118, 190, 243, 472, 611
SfaNI	GCATC	1 cut(s)	572
SinI	GGWCC	4 cut(s)	80, 227, 263, 479
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	375, 600
SsiI	CCGC	6 cut(s)	22, 46, 92, 131, 202, 216
SspMI	CTAG	2 cut(s)	251, 458
StyD4I	CCNGG	2 cut(s)	265, 384
StyI	CCWWGG	2 cut(s)	126, 223
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	289, 605
TasI	AATT	2 cut(s)	375, 600
TauI	GCSGC	2 cut(s)	204, 219
Tru1I	TTAA	2 cut(s)	72, 399
Tru9I	TTAA	2 cut(s)	72, 399
TseFI	GTSAC	2 cut(s)	270, 363
TseI	GCWGC	3 cut(s)	179, 540, 585
Tsp45I	GTSAC	2 cut(s)	270, 363
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	2 cut(s)	72, 576
VpaK11BI	GGWCC	4 cut(s)	80, 227, 263, 479
XbaI	TCTAGA	1 cut(s)	457
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	2 cut(s)	251, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.