Rh3CG159800

Pectate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009024
Physical Location & Seq
Reverse (-)
13443606 .. 13447030
3425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG159800.1

Sequence Viewer

Length: 930 bp
ATGGGCAACTCCCACGGCCACCGCAAACACCGTAACGGCGCGAACCGCCCCGTAACGCCCAATCCACCCTTTAAATATGGCCCGTCCGATCCCCAAGCACATATCCCCAGCTCATCTAAGCCCACCATGGCGGTGTCCTTGCCTTACTCTCATGTTGACTCCACCCTTCGCGCGCTCGCTGCCCAAGCTGAAGGCTTTGGCCGCTTAGCAATCGGCGGCCTCCATGGTCCTCTTTACCACGTTACTACTCTAGCCGATGATGGTCCAGGGTCACTTAGGGAAGCCTGTCGAAAGAAAGAGCCACTTTGGATTGTCTTTGATATTTCGGGCACTATCCATCTCTCGTCTTACTTGAATGTGTCGTCACATAAGACAATTGATGGCCGGGGTCAGAGGATTAAGTTTACTGGGAAGGGGTTGAGGCTGAAGGAATGTGAGCATGTGATTATATGCAATCTAGAGTTTGAAGGTGGTAGAGGACCAGATGTTGATGGTATTCAGATAAAACCAAACTCTAAGCACATATGGATAGACCGGTGCAGCCTTCGGGATTATGAAGACGGACTTATAGATATCACCAGATGCAGCACGGATATTACAATTTCGAGGTGTCATTTCTCGCAGCATGATAAGACAATGCTAATCGGAGCAGACCCCTCTCATGTAGATGACAGATGCATCCGGGTTACAGTTCACCACTGTTTCTTTGATGGGACCCGACAGCGGCATCCTCGTGTTAGATTCGCCAAAGTACATCTATACAACAATTACACCCGAAACTGGGGCATATATGCTGTTTGTGCCAGTGTAGAATCGCAGATATACTCTCAATGCAATATATATGAAGCAGGACAGAAGAAAATAGCGTTTAAATACCTTACAGAGAAGGTATGCCCCTTTTTATTTTTGGTTACTAACTACATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko02024 map00040 map02024
Pfam Domains
Protein Families
Pec_lyase_C

Protein Analysis

309

Amino Acids

34.75

Weight (kDa)

9.07

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectate_lyase_4 PF00544 117 - 287 6.4e-28 Pectate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 41, 171, 173
AciI CCGC 6 cut(s) 22, 46, 131, 202, 216, 724
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 3 cut(s) 16, 199, 382
AcuI CTGAAG 2 cut(s) 210, 446
AfaI GTAC 1 cut(s) 753
AfiI CCNNNNNNNGG 3 cut(s) 723, 780, 781
AflIII ACRYGT 1 cut(s) 921
AgeI ACCGGT 1 cut(s) 534
AgsI TTSAA 2 cut(s) 355, 467
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 2 cut(s) 111, 188
AluI AGCT 2 cut(s) 111, 188
AlwI GGATC 1 cut(s) 83
AoxI GGCC 5 cut(s) 16, 79, 199, 217, 382
ApeKI GCWGC 4 cut(s) 179, 540, 585, 622
AsiGI ACCGGT 1 cut(s) 534
AspLEI GCGC 3 cut(s) 41, 173, 175
AspS9I GGNCC 5 cut(s) 80, 227, 263, 479, 714
AsuC2I CCSGG 2 cut(s) 386, 683
AsuHPI GGTGA 2 cut(s) 568, 686
AvaII GGWCC 4 cut(s) 227, 263, 479, 714
BaeGI GKGCMC 1 cut(s) 332
BauI CACGAG 1 cut(s) 732
BbsI GAAGAC 1 cut(s) 564
BbvI GCAGC 4 cut(s) 166, 552, 597, 634
BccI CCATC 5 cut(s) 254, 345, 374, 485, 704
BceAI ACGGC 2 cut(s) 31, 52
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 2 cut(s) 386, 683
BfaI CTAG 2 cut(s) 251, 458
BisI GCNGC 7 cut(s) 180, 202, 217, 541, 586, 623, 725
BlpI GCTNAGC 1 cut(s) 205
BlsI GCNGC 7 cut(s) 181, 203, 218, 542, 587, 624, 726
Bme1390I CCNGG 3 cut(s) 267, 386, 683
Bme18I GGWCC 4 cut(s) 227, 263, 479, 714
BmgT120I GGNCC 5 cut(s) 80, 227, 263, 479, 714
BmiI GGNNCC 2 cut(s) 715, 716
BmrFI CCNGG 3 cut(s) 267, 386, 683
BmrI ACTGGG 2 cut(s) 417, 790
BmsI GCATC 4 cut(s) 572, 665, 687, 736
BmuI ACTGGG 2 cut(s) 417, 790
BpiI GAAGAC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 205
BpuMI CCSGG 2 cut(s) 386, 683
BsaJI CCNNGG 5 cut(s) 13, 126, 223, 266, 385
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 3 cut(s) 723, 780, 781
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 3 cut(s) 412, 785, 804
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 5 cut(s) 13, 126, 223, 266, 385
BseGI GGATG 2 cut(s) 678, 727
BseLI CCNNNNNNNGG 3 cut(s) 723, 780, 781
BseNI ACTGG 3 cut(s) 412, 785, 804
BsePI GCGCGC 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 4 cut(s) 166, 552, 597, 634
BseYI CCCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 559
Bsh1236I CGCG 3 cut(s) 41, 171, 173
BshFI GGCC 5 cut(s) 18, 81, 201, 219, 384
BshTI ACCGGT 1 cut(s) 534
BsiSI CCGG 3 cut(s) 385, 535, 682
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 3 cut(s) 723, 780, 781
BsmFI GGGAC 1 cut(s) 727
BsnI GGCC 5 cut(s) 18, 81, 201, 219, 384
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 1 cut(s) 88
Bsp1720I GCTNAGC 1 cut(s) 205
Bsp19I CCATGG 2 cut(s) 126, 223
BspACI CCGC 6 cut(s) 22, 46, 131, 202, 216, 724
BspANI GGCC 5 cut(s) 18, 81, 201, 219, 384
BspFNI CGCG 3 cut(s) 41, 171, 173
BspLI GGNNCC 2 cut(s) 715, 716
BspPI GGATC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 534
BsrI ACTGG 3 cut(s) 412, 785, 804
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 5 cut(s) 13, 126, 223, 266, 385
BssHII GCGCGC 1 cut(s) 171
BssMI GATC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 732
BssT1I CCWWGG 2 cut(s) 126, 223
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 32, 691, 701
BstC8I GCNNGC 2 cut(s) 173, 177
BstDEI CTNAG 4 cut(s) 117, 205, 275, 516
BstDSI CCRYGG 3 cut(s) 13, 126, 223
BstF5I GGATG 2 cut(s) 678, 727
BstFNI CGCG 3 cut(s) 41, 171, 173
BstHHI GCGC 3 cut(s) 41, 173, 175
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 5 cut(s) 45, 179, 185, 201, 800
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 2 cut(s) 443, 925
BstSCI CCNGG 3 cut(s) 265, 384, 681
BstSLI GKGCMC 1 cut(s) 332
BstUI CGCG 3 cut(s) 41, 171, 173
BstV1I GCAGC 4 cut(s) 166, 552, 597, 634
BstV2I GAAGAC 1 cut(s) 564
BsuRI GGCC 5 cut(s) 18, 81, 201, 219, 384
BtgI CCRYGG 3 cut(s) 13, 126, 223
BtsCI GGATG 2 cut(s) 678, 727
BtsIMutI CAGTG 2 cut(s) 697, 811
Cac8I GCNNGC 2 cut(s) 173, 177
CfoI GCGC 3 cut(s) 41, 173, 175
Cfr10I RCCGGY 1 cut(s) 534
Cfr13I GGNCC 5 cut(s) 80, 227, 263, 479, 714
Csp6I GTAC 1 cut(s) 752
CspAI ACCGGT 1 cut(s) 534
CviAII CATG 7 cut(s) 127, 152, 224, 440, 626, 662, 922
CviQI GTAC 1 cut(s) 752
DdeI CTNAG 4 cut(s) 117, 205, 275, 516
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 2 cut(s) 73, 871
EaeI YGGCCR 3 cut(s) 16, 199, 382
Eco130I CCWWGG 2 cut(s) 126, 223
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 4 cut(s) 227, 263, 479, 714
Eco57I CTGAAG 2 cut(s) 210, 446
EcoO109I RGGNCCY 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 126, 223
EcoT22I ATGCAT 1 cut(s) 680
ErhI CCWWGG 2 cut(s) 126, 223
FaeI CATG 7 cut(s) 130, 155, 227, 443, 629, 665, 925
FalI AAGNNNNNCTT 4 cut(s) 288, 320, 549, 581
FaqI GGGAC 1 cut(s) 727
FatI CATG 7 cut(s) 126, 151, 223, 439, 625, 661, 921
FauNDI CATATG 1 cut(s) 524
Fnu4HI GCNGC 7 cut(s) 180, 202, 217, 541, 586, 623, 725
FokI GGATG 2 cut(s) 665, 714
Fsp4HI GCNGC 7 cut(s) 180, 202, 217, 541, 586, 623, 725
FspBI CTAG 2 cut(s) 251, 458
GlaI GCGC 3 cut(s) 40, 172, 174
GluI GCNGC 7 cut(s) 180, 202, 217, 541, 586, 623, 725
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 5 cut(s) 18, 81, 201, 219, 384
HapII CCGG 3 cut(s) 385, 535, 682
HhaI GCGC 3 cut(s) 41, 173, 175
Hin1II CATG 7 cut(s) 130, 155, 227, 443, 629, 665, 925
Hin6I GCGC 3 cut(s) 39, 171, 173
HinP1I GCGC 3 cut(s) 39, 171, 173
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 158, 741, 812
HpaII CCGG 3 cut(s) 385, 535, 682
HphI GGTGA 2 cut(s) 568, 686
Hpy166II GTNNAC 3 cut(s) 157, 405, 694
Hpy188I TCNGA 4 cut(s) 88, 393, 501, 647
Hpy188III TCNNGA 3 cut(s) 458, 548, 927
Hpy8I GTNNAC 3 cut(s) 157, 405, 694
HpyAV CCTTC 7 cut(s) 176, 185, 406, 421, 461, 554, 880
HpyCH4III ACNGT 3 cut(s) 32, 691, 701
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 5 cut(s) 453, 540, 585, 678, 834
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 179, 185, 201, 800
HpyF3I CTNAG 4 cut(s) 117, 205, 275, 516
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 7 cut(s) 130, 155, 227, 443, 629, 665, 925
HspAI GCGC 3 cut(s) 39, 171, 173
KflI GGGWCCC 1 cut(s) 714
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 4 cut(s) 166, 552, 597, 634
LweI GCATC 4 cut(s) 572, 665, 687, 736
MaeI CTAG 2 cut(s) 251, 458
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 7 cut(s) 32, 52, 241, 270, 363, 685, 910
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 569, 868
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 3 cut(s) 375, 600, 766
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 8 cut(s) 230, 240, 387, 414, 470, 600, 667, 741
Mph1103I ATGCAT 1 cut(s) 680
MseI TTAA 3 cut(s) 72, 399, 870
MslI CAYNNNNRTG 3 cut(s) 131, 666, 732
MspA1I CMGCKG 1 cut(s) 724
MspI CCGG 3 cut(s) 385, 535, 682
MspR9I CCNGG 3 cut(s) 267, 386, 683
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 3 cut(s) 41, 171, 173
MwoI GCNNNNNNNGC 5 cut(s) 45, 179, 185, 201, 800
NciI CCSGG 2 cut(s) 386, 683
NcoI CCATGG 2 cut(s) 126, 223
NdeI CATATG 1 cut(s) 524
NdeII GATC 1 cut(s) 88
NlaIII CATG 7 cut(s) 130, 155, 227, 443, 629, 665, 925
NlaIV GGNNCC 2 cut(s) 715, 716
NmuCI GTSAC 2 cut(s) 270, 363
NsiI ATGCAT 1 cut(s) 680
NspI RCATGY 2 cut(s) 443, 925
PauI GCGCGC 1 cut(s) 171
PciI ACATGT 1 cut(s) 921
PfeI GAWTC 2 cut(s) 741, 812
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 7 cut(s) 181, 203, 218, 542, 587, 624, 726
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 714
PscI ACATGT 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 265
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 715, 716
PspPI GGNCC 5 cut(s) 80, 227, 263, 479, 714
PspPPI RGGWCCY 1 cut(s) 714
PteI GCGCGC 1 cut(s) 171
RsaI GTAC 1 cut(s) 753
RsaNI GTAC 1 cut(s) 752
RseI CAYNNNNRTG 3 cut(s) 131, 666, 732
SaqAI TTAA 3 cut(s) 72, 399, 870
SatI GCNGC 7 cut(s) 180, 202, 217, 541, 586, 623, 725
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 5 cut(s) 80, 227, 263, 479, 714
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 3 cut(s) 267, 386, 683
SduI GDGCHC 1 cut(s) 332
SetI ASST 7 cut(s) 113, 190, 243, 472, 611, 879, 891
SfaNI GCATC 4 cut(s) 572, 665, 687, 736
SinI GGWCC 4 cut(s) 227, 263, 479, 714
SmiMI CAYNNNNRTG 3 cut(s) 131, 666, 732
Sse9I AATT 3 cut(s) 375, 600, 766
SsiI CCGC 6 cut(s) 22, 46, 131, 202, 216, 724
SspMI CTAG 2 cut(s) 251, 458
StyD4I CCNGG 3 cut(s) 265, 384, 681
StyI CCWWGG 2 cut(s) 126, 223
TaaI ACNGT 3 cut(s) 32, 691, 701
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 289, 605
TasI AATT 3 cut(s) 375, 600, 766
TatI WGTACW 1 cut(s) 751
TauI GCSGC 3 cut(s) 204, 219, 727
TfiI GAWTC 2 cut(s) 741, 812
Tru1I TTAA 3 cut(s) 72, 399, 870
Tru9I TTAA 3 cut(s) 72, 399, 870
TscAI CASTG 2 cut(s) 704, 811
TseFI GTSAC 2 cut(s) 270, 363
TseI GCWGC 4 cut(s) 179, 540, 585, 622
Tsp45I GTSAC 2 cut(s) 270, 363
TspDTI ATGAA 2 cut(s) 570, 858
TspGWI ACGGA 2 cut(s) 576, 605
TspRI CASTG 2 cut(s) 704, 811
VpaK11BI GGWCC 4 cut(s) 227, 263, 479, 714
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 443, 925
XspI CTAG 2 cut(s) 251, 458
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.