Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006939

Physical Location & Seq

Genomic Coordinates Reverse (-)

24661945 .. 24668035

Gene Structure 6091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G252400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGGGCGATACCAGTGAGGCAGAGAATGTCACTGAGCTTGAAGCTATGTGCAAGGAAGACTCGTCTTGGCATCCATGTCAAGTCTCTCTCAGCTCTACCAAAGATAGCCTAATTGTAGACTTTGGGGGCCAGGAGTTAGAAGATATGGTGTTGAACACGGATGAAGCCCTTACGCGTCTCCGTTTTCGTTGTGCACCTCTTCAGGGTGATGACTGCACTCGCATTGAAGGAGAGCATGTTCTTGCCATCAACAAGTCACAGTCTAAGAGCCACTTCTTCGATGCCAAGGTGGAAAAGGTGCTCAGAGTGAGACACTCAACGAGGGTCTATTGTAGATGCACTTTTATGATCAAGTGGCTTCACCAAGACCTCAAAGGACAGATGGTGACTGTACCATCTAGTTCAATCATGAAACTGACAGGCAAAAACATCAATGTCCATCCAACTGTTTCTGCATTCTTGAAATCAGTTAAACAAATGGGTTTAGATAGTGCATCTTCCGTTCCAGTCATGCTTGAGGTTGAGGATTTTGCTGTTGAATTGGATCTTAATAAATTTCTGGAAAAGCAAATTGAAGACATCACTGTTTCAGCTAATGAATTCAGAAAAGCAATTACAATAGACATTTTAGAGGGGGTTAAAGCTGATAACAAGGGAGATATTCGATGCAAAGTAAGCATTTCAAATGCTCAGGTTTCTCATGACCAGGATCAATCAGAAAGTATTGCTCAGAGTTCTGGTGAGCTGGAAGTAAACATAGAAGATGAAGGCCCGCAAGCCCCTTGCTCATCCATACAAGAAGAGCATTCAGACTTCAGGTCCCGTCTTAGTCCTCTTGCTGCTCGTGCAGCTTTGGCTTTGCTAGTATCGAGTACTCACAAGCATATTGCTATAGGTGGGACTGAGCTATTCAACTCCCGTGACAGTGACAATATGTCTAGTAACACATTATCTTCTGAAGCAACCAAAGCCCATAAGAGTGAAAATGAGACCTCAGATGCTAGAAAAACTCTCTCAGCAGCTCAGAAAGGTTTTGAAAATCAAAACAATGATTCTCATGTGAAAGATTCTGCTGAAGAGATTAAGTTAAGGGCCTCAACCAACACAAGAAGGTTGACTCGTTCAGCAGTCCAAGAAGAAAAAGATAAATCAACTATGTCAATTAAACAAGGGTTGGAAGAGAGCAAGTCAGCTCATATTACAGGATCAATTTCCTATGAAGGAAATGTCACCATTCATGAAAGAAATGTATTGAAAAAGAAGAATGATGCATCGAAAAATAAGAAAGCAGTCTCTTCGCCACTTCATGCAGAGAGTAACATCCCTATGGAAGAAAGTAATGAAAAGCCGATGCCTGGTGATGCTGGAGCCATTCAAGATATAAATGTTCCAATGAAGACTTGCGCTAAGGACAACAAGTCAACAGTTCCAACCAACATGAGGAGGTTAACTCGTTCCGCACATTCTTCTGAGGAGAATTTAATAGTACCTGAAAACTATGGAATGGAAAAGAAAAGTGGTGGATCAAGAAAGAAGAAAGTTGTCTCTCCTTCATCTGACAAGGACAACACTATGCCTGGCGAAGAAATAAATAAAAAGAACATGTCTGGTGTTGTCACAAGACTTGGAAACATTCGACAAAGTGAAGGTTATATATGTTCATATTTACATGTGCATGTTTATATTCTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

565

Amino Acids

62.24

Weight (kDa)

6.1

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100
malus_domestica	MD04G1125500.v1.1
prunus_persica	Prupe.6G252400_v2.0.a1 Prupe.6G252400_v2.0.a1 Prupe.6G252400_v2.0.a1 Prupe.6G252400_v2.0.a1
pyrus_communis	pycom04g11270
rosa_chinensis	RchiOBHm_Chr3g0467001
rosa_laevigata	RLG00000024537
rosa_multiflora	Rmu_sc0001193.1_g000009
rosa_roxburghii	Rroxscaffold_6G00414020
rosa_rugosa	Rorug03G0084500 Rorug03G0084600 Rorug03G0084700 Rorug03G0084800
rosa_samantha	Rh3AG132600 Rh3BG153600 Rh3DG154700
rosa_wichuraiana	Rw3G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	175
AciI	CCGC	2 cut(s)	773, 1458
AclWI	GGATC	4 cut(s)	552, 717, 1213, 1531
AcsI	RAATTY	3 cut(s)	554, 599, 1477
AcuI	CTGAAG	4 cut(s)	185, 799, 978, 1095
AfaI	GTAC	3 cut(s)	393, 874, 1488
AfiI	CCNNNNNNNGG	3 cut(s)	203, 1355, 1440
AflIII	ACRYGT	3 cut(s)	173, 1602, 1669
AhdI	GACNNNNNGTC	3 cut(s)	817, 934, 1417
AjnI	CCWGG	4 cut(s)	129, 705, 1354, 1576
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
Alw21I	GWGCWC	2 cut(s)	196, 303
Alw26I	GTCTC	6 cut(s)	88, 182, 304, 983, 1297, 1549
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	4 cut(s)	552, 717, 1213, 1531
AoxI	GGCC	3 cut(s)	127, 769, 1092
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	839, 848, 1019
ApoI	RAATTY	3 cut(s)	554, 599, 1477
AspLEI	GCGC	1 cut(s)	1406
AspS9I	GGNCC	4 cut(s)	127, 770, 819, 1092
AsuHPI	GGTGA	6 cut(s)	218, 353, 397, 752, 1222, 1370
AvaII	GGWCC	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	196
BauI	CACGAG	1 cut(s)	843
BbsI	GAAGAC	3 cut(s)	63, 582, 1403
Bbv12I	GWGCWC	2 cut(s)	196, 303
BbvI	GCAGC	3 cut(s)	826, 860, 1031
BccI	CCATC	4 cut(s)	254, 376, 403, 447
BcgI	CGANNNNNNTGC	2 cut(s)	1278, 1312
BciT130I	CCWGG	4 cut(s)	131, 707, 1356, 1578
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	6 cut(s)	88, 182, 304, 983, 1297, 1549
BfaI	CTAG	5 cut(s)	399, 863, 939, 1002, 1693
BfmI	CTRYAG	1 cut(s)	891
BisI	GCNGC	3 cut(s)	840, 849, 1020
BlsI	GCNGC	3 cut(s)	841, 850, 1021
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	4 cut(s)	131, 707, 1356, 1578
Bme18I	GGWCC	1 cut(s)	819
BmeRI	GACNNNNNGTC	3 cut(s)	817, 934, 1417
BmgT120I	GGNCC	4 cut(s)	127, 770, 819, 1092
BmiI	GGNNCC	3 cut(s)	128, 821, 1369
BmrFI	CCNGG	4 cut(s)	131, 707, 1356, 1578
BpiI	GAAGAC	3 cut(s)	63, 582, 1403
BplI	GAGNNNNNCTC	2 cut(s)	1435, 1467
BpmI	CTGGAG	1 cut(s)	1386
Bpu10I	CCTNAGC	2 cut(s)	690, 1407
BpuEI	CTTGAG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	983
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 1355, 1440
Bse1I	ACTGG	2 cut(s)	12, 506
BseBI	CCWGG	4 cut(s)	131, 707, 1356, 1578
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	5 cut(s)	70, 166, 439, 788, 1320
BseLI	CCNNNNNNNGG	3 cut(s)	203, 1355, 1440
BseNI	ACTGG	2 cut(s)	12, 506
BseRI	GAGGAG	2 cut(s)	1456, 1487
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	3 cut(s)	826, 860, 1031
BsgI	GTGCAG	2 cut(s)	199, 867
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	129, 771, 1094
BsiHKAI	GWGCWC	2 cut(s)	196, 303
BslFI	GGGAC	2 cut(s)	805, 913
BslI	CCNNNNNNNGG	3 cut(s)	203, 1355, 1440
BsmAI	GTCTC	6 cut(s)	88, 182, 304, 983, 1297, 1549
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	805, 913
BsmI	GAATGC	2 cut(s)	455, 805
BsnI	GGCC	3 cut(s)	129, 771, 1094
Bso31I	GGTCTC	1 cut(s)	983
Bsp1286I	GDGCHC	2 cut(s)	196, 303
Bsp143I	GATC	5 cut(s)	348, 544, 709, 1205, 1523
BspACI	CCGC	2 cut(s)	773, 1458
BspANI	GGCC	3 cut(s)	129, 771, 1094
BspFNI	CGCG	1 cut(s)	175
BspHI	TCATGA	3 cut(s)	408, 700, 1237
BspLI	GGNNCC	3 cut(s)	128, 821, 1369
BspPI	GGATC	4 cut(s)	552, 717, 1213, 1531
BspQI	GCTCTTC	1 cut(s)	795
BspTNI	GGTCTC	1 cut(s)	983
BsrI	ACTGG	2 cut(s)	12, 506
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	5 cut(s)	348, 544, 709, 1205, 1523
BssSI	CACGAG	1 cut(s)	843
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	843
Bst2UI	CCWGG	4 cut(s)	131, 707, 1356, 1578
Bst4CI	ACNGT	6 cut(s)	261, 391, 448, 586, 926, 1426
Bst6I	CTCTTC	5 cut(s)	204, 795, 1071, 1173, 1300
BstC8I	GCNNGC	2 cut(s)	773, 777
BstF5I	GGATG	5 cut(s)	70, 166, 439, 788, 1320
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	1406
BstKTI	GATC	5 cut(s)	351, 547, 712, 1208, 1526
BstMAI	GTCTC	6 cut(s)	88, 182, 304, 983, 1297, 1549
BstMBI	GATC	5 cut(s)	348, 544, 709, 1205, 1523
BstMWI	GCNNNNNNNGC	5 cut(s)	675, 845, 848, 854, 968
BstNI	CCWGG	4 cut(s)	131, 707, 1356, 1578
BstNSI	RCATGY	4 cut(s)	239, 1606, 1673, 1679
BstSCI	CCNGG	4 cut(s)	129, 705, 1354, 1576
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	826, 860, 1031
BstV2I	GAAGAC	3 cut(s)	63, 582, 1403
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	129, 771, 1094
BtsCI	GGATG	5 cut(s)	70, 166, 439, 788, 1320
BtsIMutI	CAGTG	4 cut(s)	19, 30, 582, 931
Cac8I	GCNNGC	2 cut(s)	773, 777
CciI	TCATGA	3 cut(s)	408, 700, 1237
CfoI	GCGC	1 cut(s)	1406
Cfr13I	GGNCC	4 cut(s)	127, 770, 819, 1092
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	392, 873, 1487
CviQI	GTAC	3 cut(s)	392, 873, 1487
DpnI	GATC	5 cut(s)	350, 546, 711, 1207, 1525
DpnII	GATC	5 cut(s)	348, 544, 709, 1205, 1523
DriI	GACNNNNNGTC	3 cut(s)	817, 934, 1417
Eam1104I	CTCTTC	5 cut(s)	204, 795, 1071, 1173, 1300
Eam1105I	GACNNNNNGTC	3 cut(s)	817, 934, 1417
EarI	CTCTTC	5 cut(s)	204, 795, 1071, 1173, 1300
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	983
Eco47I	GGWCC	1 cut(s)	819
Eco57I	CTGAAG	4 cut(s)	185, 799, 978, 1095
EcoO109I	RGGNCCY	2 cut(s)	819, 1092
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	4 cut(s)	129, 705, 1354, 1576
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	1273
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	182
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	2 cut(s)	805, 913
FauI	CCCGC	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	840, 849, 1020
FokI	GGATG	5 cut(s)	57, 173, 426, 775, 1307
Fsp4HI	GCNGC	3 cut(s)	840, 849, 1020
FspBI	CTAG	5 cut(s)	399, 863, 939, 1002, 1693
GlaI	GCGC	1 cut(s)	1405
GluI	GCNGC	3 cut(s)	840, 849, 1020
GsuI	CTGGAG	1 cut(s)	1386
HaeIII	GGCC	3 cut(s)	129, 771, 1094
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	1406
Hin6I	GCGC	1 cut(s)	1404
HinP1I	GCGC	1 cut(s)	1404
HincII	GTYRAC	3 cut(s)	1116, 1422, 1449
HindII	GTYRAC	3 cut(s)	1116, 1422, 1449
HinfI	GANTC	4 cut(s)	59, 1052, 1067, 1117
HpaI	GTTAAC	1 cut(s)	1449
HphI	GGTGA	6 cut(s)	218, 353, 397, 752, 1222, 1370
Hpy166II	GTNNAC	6 cut(s)	118, 194, 754, 1116, 1422, 1449
Hpy188III	TCNNGA	7 cut(s)	409, 460, 560, 701, 1238, 1376, 1527
Hpy8I	GTNNAC	6 cut(s)	118, 194, 754, 1116, 1422, 1449
HpyAV	CCTTC	6 cut(s)	221, 761, 1104, 1214, 1560, 1640
HpyCH4III	ACNGT	6 cut(s)	261, 391, 448, 586, 926, 1426
HpyF10VI	GCNNNNNNNGC	5 cut(s)	675, 845, 848, 854, 968
HspAI	GCGC	1 cut(s)	1404
Ksp22I	TGATCA	1 cut(s)	348
KspAI	GTTAAC	1 cut(s)	1449
Kzo9I	GATC	5 cut(s)	348, 544, 709, 1205, 1523
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	1 cut(s)	1367
Lsp1109I	GCAGC	3 cut(s)	826, 860, 1031
MaeI	CTAG	5 cut(s)	399, 863, 939, 1002, 1693
MaeIII	GTNAC	9 cut(s)	28, 255, 385, 920, 926, 941, 1228, 1316, 1615
MalI	GATC	5 cut(s)	350, 546, 711, 1207, 1525
MboI	GATC	5 cut(s)	348, 544, 709, 1205, 1523
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	2 cut(s)	196, 303
MluCI	AATT	9 cut(s)	111, 539, 554, 570, 599, 612, 1161, 1209, 1477
MluI	ACGCGT	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	53, 1111
MmeI	TCCRAC	3 cut(s)	467, 1155, 1454
Mph1103I	ATGCAT	1 cut(s)	1273
MseI	TTAA	8 cut(s)	471, 549, 639, 1083, 1088, 1164, 1448, 1481
MslI	CAYNNNNRTG	4 cut(s)	344, 978, 1325, 1674
MspR9I	CCNGG	4 cut(s)	131, 707, 1356, 1578
Mva1269I	GAATGC	2 cut(s)	455, 805
MvaI	CCWGG	4 cut(s)	131, 707, 1356, 1578
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	5 cut(s)	675, 845, 848, 854, 968
NdeII	GATC	5 cut(s)	348, 544, 709, 1205, 1523
NlaIV	GGNNCC	3 cut(s)	128, 821, 1369
NmuCI	GTSAC	7 cut(s)	28, 255, 385, 920, 926, 1228, 1615
NsiI	ATGCAT	1 cut(s)	1273
NspI	RCATGY	4 cut(s)	239, 1606, 1673, 1679
PagI	TCATGA	3 cut(s)	408, 700, 1237
PciI	ACATGT	2 cut(s)	1602, 1669
PciSI	GCTCTTC	1 cut(s)	795
PctI	GAATGC	2 cut(s)	455, 805
PfeI	GAWTC	2 cut(s)	1052, 1067
PkrI	GCNGC	3 cut(s)	841, 850, 1021
PleI	GAGTC	2 cut(s)	53, 1111
PpsI	GAGTC	2 cut(s)	53, 1111
PpuMI	RGGWCCY	1 cut(s)	819
PscI	ACATGT	2 cut(s)	1602, 1669
Psp5II	RGGWCCY	1 cut(s)	819
Psp6I	CCWGG	4 cut(s)	129, 705, 1354, 1576
PspGI	CCWGG	4 cut(s)	129, 705, 1354, 1576
PspN4I	GGNNCC	3 cut(s)	128, 821, 1369
PspPI	GGNCC	4 cut(s)	127, 770, 819, 1092
PspPPI	RGGWCCY	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	3 cut(s)	393, 874, 1488
RsaNI	GTAC	3 cut(s)	392, 873, 1487
RseI	CAYNNNNRTG	4 cut(s)	344, 978, 1325, 1674
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	8 cut(s)	471, 549, 639, 1083, 1088, 1164, 1448, 1481
SatI	GCNGC	3 cut(s)	840, 849, 1020
Sau3AI	GATC	5 cut(s)	348, 544, 709, 1205, 1523
Sau96I	GGNCC	4 cut(s)	127, 770, 819, 1092
ScaI	AGTACT	1 cut(s)	874
SchI	GAGTC	2 cut(s)	53, 1111
ScrFI	CCNGG	4 cut(s)	131, 707, 1356, 1578
SduI	GDGCHC	2 cut(s)	196, 303
SfcI	CTRYAG	1 cut(s)	891
SinI	GGWCC	1 cut(s)	819
SmiMI	CAYNNNNRTG	4 cut(s)	344, 978, 1325, 1674
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	9 cut(s)	111, 539, 554, 570, 599, 612, 1161, 1209, 1477
SsiI	CCGC	2 cut(s)	773, 1458
SspMI	CTAG	5 cut(s)	399, 863, 939, 1002, 1693
StyD4I	CCNGG	4 cut(s)	129, 705, 1354, 1576
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	6 cut(s)	261, 391, 448, 586, 926, 1426
TaqI	TCGA	5 cut(s)	279, 664, 869, 1274, 1636
TasI	AATT	9 cut(s)	111, 539, 554, 570, 599, 612, 1161, 1209, 1477
TatI	WGTACW	1 cut(s)	872
TfiI	GAWTC	2 cut(s)	1052, 1067
Tru1I	TTAA	8 cut(s)	471, 549, 639, 1083, 1088, 1164, 1448, 1481
Tru9I	TTAA	8 cut(s)	471, 549, 639, 1083, 1088, 1164, 1448, 1481
TscAI	CASTG	4 cut(s)	19, 37, 589, 931
TseFI	GTSAC	7 cut(s)	28, 255, 385, 920, 926, 1228, 1615
TseI	GCWGC	3 cut(s)	839, 848, 1019
Tsp45I	GTSAC	7 cut(s)	28, 255, 385, 920, 926, 1228, 1615
TspGWI	ACGGA	3 cut(s)	170, 173, 490
TspRI	CASTG	4 cut(s)	19, 37, 589, 931
VneI	GTGCAC	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	819
XapI	RAATTY	3 cut(s)	554, 599, 1477
XceI	RCATGY	4 cut(s)	239, 1606, 1673, 1679
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	5 cut(s)	399, 863, 939, 1002, 1693
ZrmI	AGTACT	1 cut(s)	874
Zsp2I	ATGCAT	1 cut(s)	1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.