Rh3DG154700

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006939
Physical Location & Seq
Forward (+)
13273839 .. 13277672
3834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG154700.1

Sequence Viewer

Length: 1737 bp
ATGGACTCTATCAGAGAAGCGGAGAGTGCCACTGAACTTGAAGCCTTGTGCAAGCAGGATTCTTCTTGGTATCCCTGCCAGGTCTCCCTCAGCTCTACTGAAGATAGCCTAATTGTCGACTTTGGGAGGCAGGAGTTAGAAGATATGGTGTTGGACAAGGATGAAGCACTTACGCGTCTTCGTTTTCGTTCGGCTCCTCTTCAGGGCGACGACTGCTCTCGCATTGAAGGAGAGCATGTTCTTTCCATCCATAAATCACCATATAAGAGCCACTTATATGATGCCAAGGTGGAAAAGGTGACCAGAGTGAGACACTCTACAAGGGTCTATTGCAGATGCAGTTTTATGATTAAGTGGCTTCACCCAGACTTCAAAGGACAGATGGTCACTGTCCCCTCTAGTTCAATCATGAAACTAGCAAGCAAAAGCATCAATTCTCATCCAACTGTTGCTGCATTATTGAAATCAGTTAAGCAAATGGGTTTATATACTGCACCTCCCCTTCCAATCATGCATGAAGACAATGATGTTGAATTCGACCTCAATAAATTATTGGGAAAGCAAATAGAAGAGATCAACATTTCAGCTAATGGAGTCACAAATGAAACTACAGTAGACATATTAGAGGGGGTTAAAGCTGTTGACAATGGACATGTTACTGTGTCCAAAGTAGGCACTTCAAAAGCTCAGGTTTCTCATGACCAGGATCAATTGAAATCTGTTAGTAACAGACCTGGTAACCTGGAAGTAAACATAGAAGATGAGGACCCACAAGCCCCTCTCTCATCCAAACAAGAAGAGCATTCAGAACACAGGTCTCATATTAGTCCTCTTGCTGCCCGTGCAGCTCTGGCCTCCCTAGTGTCGCTTACTCACAAGCATATTGCTATAAGTGGGACTGAACTTTTCAAGTCCAGTGACAGTAATAATATGTCTATTATGGTATCTTCTACTACAATCAAATCTCCAAAAAATGGAAATGCGAACTCAGGTGTTAGAACAACTCTCTCAACAGTTCAGAAAGGTTTTGGAATTCAGAACAGTGATTTGCATGATTCTACTGAAGCCATCGAGTTAAGGGTCTTAACCAACACAGGAAGGTTGACACATTTAGCAGTCAAAGAAGAAAAAGATATATCATCTATGGAAATTAAACAAGGGTCGGAAGAAAGTGGGTCTGCTCAGAGTACAGGATCATATTCTTCTGAAGGAACTGACATTGTTCATGAAAGCAAAGTACTGAGAAAGAAGAATGATATATCAAACAAAGCAGTCTCTTCACCATTTCATTCAGAGAGTAACGGCCCTAAGGAAAATCTGACGTCTGGTGATCTTGAGGCGATTCAAGATGCATATGTTCAGATGAAGACTTGTGCTAAAGACACCAAGTCAAGTGTTTCAACCAACATGAGGAGGTTGACTCGTTCCATGGTCTCTTCTAAAGACAATTTGATAGTTCCTGAAAGCCATGCAGTGGAAAAGGAAAATCGTGAATCAAAAAAGAAGAAAGCTGTCTCTGCGACATCTCATAATGACAGTACACAAGGTGAAGAAAGTAATAGAAAGCACATGTCCGGTGCTGTCAGAAACAGTCGACAAACTGAAGGAAAAATGTCAGGCAGTGGTGACAATAGTCAAGGCCAGAAGAGGAAGTCTACTTCTTTGAGTAGGCAAGAGCAACGGTTTTCTCCACGATTAAGGTTTCTCCCTCGCACTCGTTCACAAAACAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

578

Amino Acids

63.66

Weight (kDa)

7.72

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 11 - 137 1.4e-22 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1325
AccB7I CCANNNNNTGG 2 cut(s) 974, 1474
AccI GTMKAC 4 cut(s) 117, 615, 1594, 1655
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 714, 1201
AcsI RAATTY 2 cut(s) 533, 1032
AcuI CTGAAG 5 cut(s) 120, 185, 1083, 1227, 1623
AcyI GRCGYC 1 cut(s) 1322
AdeI CACNNNGTG 1 cut(s) 1547
AfaI GTAC 3 cut(s) 1189, 1239, 1540
AfiI CCNNNNNNNGG 4 cut(s) 203, 974, 1410, 1474
AflIII ACRYGT 3 cut(s) 173, 652, 1569
AhdI GACNNNNNGTC 2 cut(s) 383, 1387
AjnI CCWGG 4 cut(s) 78, 702, 733, 741
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 6 cut(s) 93, 587, 638, 686, 848, 1511
AluI AGCT 6 cut(s) 93, 587, 638, 686, 848, 1511
Alw26I GTCTC 6 cut(s) 88, 304, 822, 1279, 1438, 1519
AlwI GGATC 2 cut(s) 714, 1201
AoxI GGCC 3 cut(s) 852, 1303, 1639
ApeKI GCWGC 3 cut(s) 452, 836, 845
ApoI RAATTY 2 cut(s) 533, 1032
AspS9I GGNCC 2 cut(s) 766, 1304
AsuHPI GGTGA 7 cut(s) 249, 310, 353, 1272, 1340, 1559, 1637
AvaII GGWCC 1 cut(s) 766
AxyI CCTNAGG 1 cut(s) 1308
BbsI GAAGAC 3 cut(s) 170, 525, 1373
BbvCI CCTCAGC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 439, 823, 857
BccI CCATC 3 cut(s) 254, 376, 1076
BceAI ACGGC 1 cut(s) 1318
BciT130I CCWGG 4 cut(s) 80, 704, 735, 743
BciVI GTATCC 1 cut(s) 81
BcoDI GTCTC 6 cut(s) 88, 304, 822, 1279, 1438, 1519
BfaI CTAG 3 cut(s) 399, 416, 860
BfmI CTRYAG 1 cut(s) 609
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 3 cut(s) 453, 837, 846
BlsI GCNGC 3 cut(s) 454, 838, 847
BmcAI AGTACT 1 cut(s) 1239
Bme1390I CCNGG 4 cut(s) 80, 704, 735, 743
Bme18I GGWCC 1 cut(s) 766
BmeRI GACNNNNNGTC 2 cut(s) 383, 1387
BmgT120I GGNCC 2 cut(s) 766, 1304
BmiI GGNNCC 2 cut(s) 195, 768
BmrFI CCNGG 4 cut(s) 80, 704, 735, 743
BmsI GCATC 4 cut(s) 271, 326, 438, 1339
BoxI GACNNNNGTC 1 cut(s) 1632
BpiI GAAGAC 3 cut(s) 170, 525, 1373
BplI GAGNNNNNCTC 2 cut(s) 1405, 1437
Bpu10I CCTNAGC 2 cut(s) 89, 687
BpuEI CTTGAG 1 cut(s) 1355
BsaHI GRCGYC 1 cut(s) 1322
BsaI GGTCTC 3 cut(s) 88, 822, 1438
BsaJI CCNNGG 2 cut(s) 285, 1428
BsaWI WCCGGW 1 cut(s) 1574
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 481, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 974, 1410, 1474
Bse1I ACTGG 1 cut(s) 915
Bse21I CCTNAGG 1 cut(s) 1308
BseBI CCWGG 4 cut(s) 80, 704, 735, 743
BseDI CCNNGG 2 cut(s) 285, 1428
BseGI GGATG 4 cut(s) 166, 246, 439, 785
BseLI CCNNNNNNNGG 4 cut(s) 203, 974, 1410, 1474
BseMII CTCAG 5 cut(s) 103, 701, 1002, 1196, 1232
BseNI ACTGG 1 cut(s) 915
BseRI GAGGAG 2 cut(s) 186, 1426
BseXI GCAGC 3 cut(s) 439, 823, 857
BsgI GTGCAG 2 cut(s) 477, 864
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 854, 1305, 1641
BsiSI CCGG 1 cut(s) 1575
BslFI GGGAC 2 cut(s) 377, 910
BslI CCNNNNNNNGG 4 cut(s) 203, 974, 1410, 1474
BsmAI GTCTC 6 cut(s) 88, 304, 822, 1279, 1438, 1519
BsmFI GGGAC 2 cut(s) 377, 910
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 3 cut(s) 854, 1305, 1641
Bso31I GGTCTC 3 cut(s) 88, 822, 1438
Bsp143I GATC 4 cut(s) 573, 706, 1193, 1330
Bsp19I CCATGG 1 cut(s) 1428
BspACI CCGC 1 cut(s) 20
BspANI GGCC 3 cut(s) 854, 1305, 1641
BspCNI CTCAG 5 cut(s) 102, 700, 1001, 1195, 1233
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 3 cut(s) 408, 697, 1225
BspLI GGNNCC 2 cut(s) 195, 768
BspPI GGATC 2 cut(s) 714, 1201
BspQI GCTCTTC 1 cut(s) 792
BspTNI GGTCTC 3 cut(s) 88, 822, 1438
BsrI ACTGG 1 cut(s) 915
BssECI CCNNGG 2 cut(s) 285, 1428
BssMI GATC 4 cut(s) 573, 706, 1193, 1330
BssNI GRCGYC 1 cut(s) 1322
BssT1I CCWWGG 2 cut(s) 285, 1428
Bst2UI CCWGG 4 cut(s) 80, 704, 735, 743
Bst6I CTCTTC 6 cut(s) 204, 564, 792, 1282, 1441, 1640
BstACI GRCGYC 1 cut(s) 1322
BstC8I GCNNGC 2 cut(s) 53, 421
BstDEI CTNAG 6 cut(s) 89, 687, 988, 1182, 1241, 1308
BstDSI CCRYGG 1 cut(s) 1428
BstEII GGTNACC 2 cut(s) 298, 737
BstF5I GGATG 4 cut(s) 166, 246, 439, 785
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 4 cut(s) 576, 709, 1196, 1333
BstMAI GTCTC 6 cut(s) 88, 304, 822, 1279, 1438, 1519
BstMBI GATC 4 cut(s) 573, 706, 1193, 1330
BstMWI GCNNNNNNNGC 6 cut(s) 26, 213, 842, 845, 851, 1517
BstNI CCWGG 4 cut(s) 80, 704, 735, 743
BstNSI RCATGY 3 cut(s) 239, 656, 1573
BstPAI GACNNNNGTC 1 cut(s) 1632
BstPI GGTNACC 2 cut(s) 298, 737
BstSCI CCNGG 4 cut(s) 78, 702, 733, 741
BstSFI CTRYAG 1 cut(s) 609
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 3 cut(s) 439, 823, 857
BstV2I GAAGAC 3 cut(s) 170, 525, 1373
Bsu36I CCTNAGG 1 cut(s) 1308
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 854, 1305, 1641
BtgI CCRYGG 1 cut(s) 1428
BtsCI GGATG 4 cut(s) 166, 246, 439, 785
BtsI GCAGTG 2 cut(s) 1479, 1627
BtsIMutI CAGTG 6 cut(s) 30, 387, 922, 1048, 1479, 1627
Cac8I GCNNGC 2 cut(s) 53, 421
CciI TCATGA 3 cut(s) 408, 697, 1225
Cfr13I GGNCC 2 cut(s) 766, 1304
CseI GACGC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 3 cut(s) 1188, 1238, 1539
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviQI GTAC 3 cut(s) 1188, 1238, 1539
DdeI CTNAG 6 cut(s) 89, 687, 988, 1182, 1241, 1308
DpnI GATC 4 cut(s) 575, 708, 1195, 1332
DpnII GATC 4 cut(s) 573, 706, 1193, 1330
DraIII CACNNNGTG 1 cut(s) 1547
DriI GACNNNNNGTC 2 cut(s) 383, 1387
Eam1104I CTCTTC 6 cut(s) 204, 564, 792, 1282, 1441, 1640
Eam1105I GACNNNNNGTC 2 cut(s) 383, 1387
EarI CTCTTC 6 cut(s) 204, 564, 792, 1282, 1441, 1640
Eco130I CCWWGG 2 cut(s) 285, 1428
Eco31I GGTCTC 3 cut(s) 88, 822, 1438
Eco47I GGWCC 1 cut(s) 766
Eco57I CTGAAG 5 cut(s) 120, 185, 1083, 1227, 1623
Eco81I CCTNAGG 1 cut(s) 1308
Eco91I GGTNACC 2 cut(s) 298, 737
EcoO109I RGGNCCY 1 cut(s) 766
EcoO65I GGTNACC 2 cut(s) 298, 737
EcoRI GAATTC 2 cut(s) 533, 1032
EcoRII CCWGG 4 cut(s) 78, 702, 733, 741
EcoT14I CCWWGG 2 cut(s) 285, 1428
EcoT22I ATGCAT 2 cut(s) 516, 1354
ErhI CCWWGG 2 cut(s) 285, 1428
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 2 cut(s) 377, 910
FauNDI CATATG 1 cut(s) 1354
FblI GTMKAC 4 cut(s) 117, 615, 1594, 1655
Fnu4HI GCNGC 3 cut(s) 453, 837, 846
FokI GGATG 4 cut(s) 173, 233, 426, 772
Fsp4HI GCNGC 3 cut(s) 453, 837, 846
FspBI CTAG 3 cut(s) 399, 416, 860
GluI GCNGC 3 cut(s) 453, 837, 846
HaeIII GGCC 3 cut(s) 854, 1305, 1641
HapII CCGG 1 cut(s) 1575
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 1322
HincII GTYRAC 5 cut(s) 118, 643, 1104, 1419, 1595
HindII GTYRAC 5 cut(s) 118, 643, 1104, 1419, 1595
HinfI GANTC 7 cut(s) 5, 59, 594, 1055, 1342, 1420, 1493
HpaII CCGG 1 cut(s) 1575
HphI GGTGA 7 cut(s) 249, 310, 353, 1272, 1340, 1559, 1637
Hpy188III TCNNGA 7 cut(s) 409, 698, 1226, 1334, 1346, 1460, 1490
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 5 cut(s) 221, 512, 1092, 1202, 1598
HpyCH4IV ACGT 1 cut(s) 1322
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 213, 842, 845, 851, 1517
HpyF3I CTNAG 6 cut(s) 89, 687, 988, 1182, 1241, 1308
HpySE526I ACGT 1 cut(s) 1322
Hsp92I GRCGYC 1 cut(s) 1322
Kzo9I GATC 4 cut(s) 573, 706, 1193, 1330
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 439, 823, 857
LweI GCATC 4 cut(s) 271, 326, 438, 1339
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 3 cut(s) 399, 416, 860
MaeII ACGT 1 cut(s) 1322
MaeIII GTNAC 9 cut(s) 298, 385, 595, 655, 725, 737, 917, 1298, 1625
MalI GATC 4 cut(s) 575, 708, 1195, 1332
MboI GATC 4 cut(s) 573, 706, 1193, 1330
MfeI CAATTG 1 cut(s) 710
MluCI AATT 8 cut(s) 111, 433, 533, 548, 710, 1032, 1149, 1447
MluI ACGCGT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 603, 1414
MmeI TCCRAC 3 cut(s) 132, 467, 1143
Mph1103I ATGCAT 2 cut(s) 516, 1354
MseI TTAA 8 cut(s) 351, 471, 633, 1076, 1085, 1152, 1697, 1735
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 1575
MspR9I CCNGG 4 cut(s) 80, 704, 735, 743
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 4 cut(s) 80, 704, 735, 743
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 6 cut(s) 26, 213, 842, 845, 851, 1517
NcoI CCATGG 1 cut(s) 1428
NdeI CATATG 1 cut(s) 1354
NdeII GATC 4 cut(s) 573, 706, 1193, 1330
NlaIV GGNNCC 2 cut(s) 195, 768
NmuCI GTSAC 5 cut(s) 298, 385, 595, 917, 1625
NsiI ATGCAT 2 cut(s) 516, 1354
NspI RCATGY 3 cut(s) 239, 656, 1573
PagI TCATGA 3 cut(s) 408, 697, 1225
PciI ACATGT 2 cut(s) 652, 1569
PciSI GCTCTTC 1 cut(s) 792
PctI GAATGC 1 cut(s) 802
PfeI GAWTC 4 cut(s) 59, 1055, 1342, 1493
PflMI CCANNNNNTGG 2 cut(s) 974, 1474
PkrI GCNGC 3 cut(s) 454, 838, 847
PleI GAGTC 2 cut(s) 602, 1414
PpsI GAGTC 2 cut(s) 602, 1414
PpuMI RGGWCCY 1 cut(s) 766
PscI ACATGT 2 cut(s) 652, 1569
PshAI GACNNNNGTC 1 cut(s) 1632
Psp5II RGGWCCY 1 cut(s) 766
Psp6I CCWGG 4 cut(s) 78, 702, 733, 741
PspEI GGTNACC 2 cut(s) 298, 737
PspGI CCWGG 4 cut(s) 78, 702, 733, 741
PspN4I GGNNCC 2 cut(s) 195, 768
PspPI GGNCC 2 cut(s) 766, 1304
PspPPI RGGWCCY 1 cut(s) 766
RsaI GTAC 3 cut(s) 1189, 1239, 1540
RsaNI GTAC 3 cut(s) 1188, 1238, 1539
RseI CAYNNNNRTG 1 cut(s) 276
SalI GTCGAC 2 cut(s) 116, 1593
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 8 cut(s) 351, 471, 633, 1076, 1085, 1152, 1697, 1735
SatI GCNGC 3 cut(s) 453, 837, 846
Sau3AI GATC 4 cut(s) 573, 706, 1193, 1330
Sau96I GGNCC 2 cut(s) 766, 1304
ScaI AGTACT 1 cut(s) 1239
SchI GAGTC 2 cut(s) 603, 1414
ScrFI CCNGG 4 cut(s) 80, 704, 735, 743
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 4 cut(s) 271, 326, 438, 1339
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 766
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 1334
SmoI CTYRAG 1 cut(s) 1334
Sse9I AATT 8 cut(s) 111, 433, 533, 548, 710, 1032, 1149, 1447
SsiI CCGC 1 cut(s) 20
SspMI CTAG 3 cut(s) 399, 416, 860
StyD4I CCNGG 4 cut(s) 78, 702, 733, 741
StyI CCWWGG 2 cut(s) 285, 1428
TaiI ACGT 1 cut(s) 1325
TaqI TCGA 4 cut(s) 117, 537, 1071, 1594
TasI AATT 8 cut(s) 111, 433, 533, 548, 710, 1032, 1149, 1447
TatI WGTACW 3 cut(s) 1187, 1237, 1538
TfiI GAWTC 4 cut(s) 59, 1055, 1342, 1493
Tru1I TTAA 8 cut(s) 351, 471, 633, 1076, 1085, 1152, 1697, 1735
Tru9I TTAA 8 cut(s) 351, 471, 633, 1076, 1085, 1152, 1697, 1735
TscAI CASTG 6 cut(s) 37, 394, 922, 1048, 1479, 1627
TseFI GTSAC 5 cut(s) 298, 385, 595, 917, 1625
TseI GCWGC 3 cut(s) 452, 836, 845
Tsp45I GTSAC 5 cut(s) 298, 385, 595, 917, 1625
TspDTI ATGAA 8 cut(s) 177, 425, 531, 618, 1214, 1242, 1277, 1379
TspRI CASTG 6 cut(s) 37, 394, 922, 1048, 1479, 1627
Van91I CCANNNNNTGG 2 cut(s) 974, 1474
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 2 cut(s) 533, 1032
XceI RCATGY 3 cut(s) 239, 656, 1573
XmiI GTMKAC 4 cut(s) 117, 615, 1594, 1655
XspI CTAG 3 cut(s) 399, 416, 860
ZraI GACGTC 1 cut(s) 1323
ZrmI AGTACT 1 cut(s) 1239
Zsp2I ATGCAT 2 cut(s) 516, 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.