Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001193.1

Orthogroup ID

OG0006939

Physical Location & Seq

Genomic Coordinates Reverse (-)

52115 .. 54857

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001193.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

atggtccacagctctactgaagatagcctaattgtcgactttgggaggcaggagttagaagaaatggtgttgaacaaggatgaagcacttacgcgtcttcgttttcgttcggctcctcttcagggtgacgactgctctcgcattgaaggagagcatgttctttccatccataaatcaccatataagagccacttatatgatgccaaggtggaaaaggtgaacagagtgagacactctacaagggtcttttgcagatgcagttttatgattaagtggcttcacccagacttcaaaggacagatggtcactgtcccctctagttcaatcatgaaactagcaagcaaaagcatcaattatcatccaactgttgctgcattattgaaatcagttaagcaaatgggtttatatactgcacctccccttccaatcatgcatgaagacaatgatgttgaattcgacctcaataaattattgggaaagcaaatagaagagatcaacatttcagctaatggagtcacaaatgaaactacagtagacatattagagggggttaaagctgttgacaatggacatgttactgtgtccaaagtagtcacttcaaaagctcaggtttctcatgaccaggatcaattgaaatctgttagtaacagacctggtaacctggaagtaaacatagaagatgaggaccgacaagcccctctctcatccaaacaagaagagcattcagaacacaggtctcatattagtcctcttgcagcccgtgcagctctggcctccctagtgtcacttactcacaagcatattgctataagtgggactgaacttttcaagtccagtgacagtaataatatgtctattatggtatcttctactacaatcaaatctccaaaaaatggaaatgcgaactcaggtgttagaacaactcgctcaacagttcagaaaggttttggaattcagaacagtgatttgcatgattttactaaagccatcgagttaagggtcttaaccaacacaggaaggttgacgcgtttagcagtcaaagaagaaaaagatatatcatctatggaaattaaacaagggtcagaagaaagtgagtctgctcagattacaggatcatattgttctgaaggaactgacattgttcatgaaagcaaagtactgagaaagaagaatgatatatcaaacaaagcagtctcttcaccatttcattctgagagtaacggccctaaggaaaatctgacgtctggtgatcttgaggcgattcaagatgcatatgttcagatgaagacttgtgctaaagacaccaagtcaagtgtttcaaccaacatgaggaggttgactcgttccatggtctcttgtaaagacaatttgatagttcctgaaagccatgcagtggaaaaagaaaatcgtgaatcaaaaaagaagaaagctgtctctgcgacatctcataatgacagtacacaaggtgaagaaagtaatagaaagcacatgtccggtgctgtcagaaacagtcgacaaactgaaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

509

Amino Acids

56.26

Weight (kDa)

7.72

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100 FvH4_6g14100
malus_domestica	MD04G1125500.v1.1
prunus_persica	Prupe.6G252400_v2.0.a1 Prupe.6G252400_v2.0.a1 Prupe.6G252400_v2.0.a1 Prupe.6G252400_v2.0.a1
pyrus_communis	pycom04g11270
rosa_chinensis	RchiOBHm_Chr3g0467001
rosa_laevigata	RLG00000024537
rosa_multiflora	Rmu_sc0001193.1_g000009
rosa_roxburghii	Rroxscaffold_6G00414020
rosa_rugosa	Rorug03G0084500 Rorug03G0084600 Rorug03G0084700 Rorug03G0084800
rosa_samantha	Rh3AG132600 Rh3BG153600 Rh3DG154700
rosa_wichuraiana	Rw3G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1244
AccB7I	CCANNNNNTGG	2 cut(s)	893, 1393
AccI	GTMKAC	3 cut(s)	36, 534, 1513
AccII	CGCG	2 cut(s)	94, 1027
AclWI	GGATC	2 cut(s)	633, 1120
AcsI	RAATTY	2 cut(s)	452, 951
AcuI	CTGAAG	3 cut(s)	39, 104, 1146
AcyI	GRCGYC	1 cut(s)	1241
AdeI	CACNNNGTG	1 cut(s)	1466
AfaI	GTAC	2 cut(s)	1158, 1459
AfiI	CCNNNNNNNGG	4 cut(s)	122, 893, 1329, 1393
AflIII	ACRYGT	4 cut(s)	92, 571, 1025, 1488
AhdI	GACNNNNNGTC	2 cut(s)	302, 1306
AjnI	CCWGG	3 cut(s)	621, 652, 660
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	6 cut(s)	12, 506, 557, 605, 767, 1430
AluI	AGCT	6 cut(s)	12, 506, 557, 605, 767, 1430
Alw26I	GTCTC	5 cut(s)	223, 741, 1198, 1357, 1438
AlwI	GGATC	2 cut(s)	633, 1120
AoxI	GGCC	2 cut(s)	771, 1222
ApeKI	GCWGC	3 cut(s)	371, 755, 764
ApoI	RAATTY	2 cut(s)	452, 951
AspS9I	GGNCC	3 cut(s)	4, 685, 1223
AsuHPI	GGTGA	7 cut(s)	137, 168, 229, 272, 1191, 1259, 1478
AvaII	GGWCC	2 cut(s)	4, 685
AxyI	CCTNAGG	1 cut(s)	1227
BbsI	GAAGAC	3 cut(s)	89, 444, 1292
BbvI	GCAGC	3 cut(s)	358, 767, 776
BccI	CCATC	3 cut(s)	173, 295, 995
BceAI	ACGGC	1 cut(s)	1237
BciT130I	CCWGG	3 cut(s)	623, 654, 662
BcoDI	GTCTC	5 cut(s)	223, 741, 1198, 1357, 1438
BfaI	CTAG	3 cut(s)	318, 335, 779
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	3 cut(s)	372, 756, 765
BlsI	GCNGC	3 cut(s)	373, 757, 766
BmcAI	AGTACT	1 cut(s)	1158
Bme1390I	CCNGG	3 cut(s)	623, 654, 662
Bme18I	GGWCC	2 cut(s)	4, 685
BmeRI	GACNNNNNGTC	2 cut(s)	302, 1306
BmgT120I	GGNCC	3 cut(s)	4, 685, 1223
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	3 cut(s)	623, 654, 662
BmsI	GCATC	4 cut(s)	190, 245, 357, 1258
BpiI	GAAGAC	3 cut(s)	89, 444, 1292
BplI	GAGNNNNNCTC	2 cut(s)	1324, 1356
Bpu10I	CCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	1274
BsaHI	GRCGYC	1 cut(s)	1241
BsaI	GGTCTC	2 cut(s)	741, 1357
BsaJI	CCNNGG	2 cut(s)	204, 1347
BsaWI	WCCGGW	1 cut(s)	1493
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 400, 430
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 893, 1329, 1393
Bse1I	ACTGG	1 cut(s)	834
Bse21I	CCTNAGG	1 cut(s)	1227
BseBI	CCWGG	3 cut(s)	623, 654, 662
BseDI	CCNNGG	2 cut(s)	204, 1347
BseGI	GGATG	4 cut(s)	85, 165, 358, 704
BseLI	CCNNNNNNNGG	4 cut(s)	122, 893, 1329, 1393
BseMII	CTCAG	5 cut(s)	620, 921, 1115, 1151, 1203
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	2 cut(s)	105, 1345
BseXI	GCAGC	3 cut(s)	358, 767, 776
BsgI	GTGCAG	2 cut(s)	396, 783
Bsh1236I	CGCG	2 cut(s)	94, 1027
BshFI	GGCC	2 cut(s)	773, 1224
BsiSI	CCGG	1 cut(s)	1494
BslFI	GGGAC	2 cut(s)	296, 829
BslI	CCNNNNNNNGG	4 cut(s)	122, 893, 1329, 1393
BsmAI	GTCTC	5 cut(s)	223, 741, 1198, 1357, 1438
BsmFI	GGGAC	2 cut(s)	296, 829
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	773, 1224
Bso31I	GGTCTC	2 cut(s)	741, 1357
Bsp143I	GATC	4 cut(s)	492, 625, 1112, 1249
Bsp19I	CCATGG	1 cut(s)	1347
BspANI	GGCC	2 cut(s)	773, 1224
BspCNI	CTCAG	5 cut(s)	619, 920, 1114, 1152, 1204
BspFNI	CGCG	2 cut(s)	94, 1027
BspHI	TCATGA	3 cut(s)	327, 616, 1144
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	633, 1120
BspQI	GCTCTTC	1 cut(s)	711
BspTNI	GGTCTC	2 cut(s)	741, 1357
BsrI	ACTGG	1 cut(s)	834
BssECI	CCNNGG	2 cut(s)	204, 1347
BssMI	GATC	4 cut(s)	492, 625, 1112, 1249
BssNI	GRCGYC	1 cut(s)	1241
BssT1I	CCWWGG	2 cut(s)	204, 1347
Bst2UI	CCWGG	3 cut(s)	623, 654, 662
Bst4CI	ACNGT	9 cut(s)	310, 367, 532, 580, 842, 934, 962, 1457, 1511
Bst6I	CTCTTC	4 cut(s)	123, 483, 711, 1201
BstACI	GRCGYC	1 cut(s)	1241
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	6 cut(s)	606, 907, 1101, 1160, 1212, 1227
BstDSI	CCRYGG	1 cut(s)	1347
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	4 cut(s)	85, 165, 358, 704
BstFNI	CGCG	2 cut(s)	94, 1027
BstKTI	GATC	4 cut(s)	495, 628, 1115, 1252
BstMAI	GTCTC	5 cut(s)	223, 741, 1198, 1357, 1438
BstMBI	GATC	4 cut(s)	492, 625, 1112, 1249
BstMWI	GCNNNNNNNGC	4 cut(s)	761, 764, 770, 1436
BstNI	CCWGG	3 cut(s)	623, 654, 662
BstNSI	RCATGY	3 cut(s)	158, 575, 1492
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	3 cut(s)	621, 652, 660
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	2 cut(s)	94, 1027
BstV1I	GCAGC	3 cut(s)	358, 767, 776
BstV2I	GAAGAC	3 cut(s)	89, 444, 1292
Bsu36I	CCTNAGG	1 cut(s)	1227
BsuRI	GGCC	2 cut(s)	773, 1224
BtgI	CCRYGG	1 cut(s)	1347
BtsCI	GGATG	4 cut(s)	85, 165, 358, 704
BtsI	GCAGTG	1 cut(s)	1398
BtsIMutI	CAGTG	4 cut(s)	306, 841, 967, 1398
Cac8I	GCNNGC	1 cut(s)	340
CciI	TCATGA	3 cut(s)	327, 616, 1144
Cfr13I	GGNCC	3 cut(s)	4, 685, 1223
CseI	GACGC	2 cut(s)	83, 1033
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	1157, 1458
CviQI	GTAC	2 cut(s)	1157, 1458
DdeI	CTNAG	6 cut(s)	606, 907, 1101, 1160, 1212, 1227
DpnI	GATC	4 cut(s)	494, 627, 1114, 1251
DpnII	GATC	4 cut(s)	492, 625, 1112, 1249
DraIII	CACNNNGTG	1 cut(s)	1466
DriI	GACNNNNNGTC	2 cut(s)	302, 1306
Eam1104I	CTCTTC	4 cut(s)	123, 483, 711, 1201
Eam1105I	GACNNNNNGTC	2 cut(s)	302, 1306
EarI	CTCTTC	4 cut(s)	123, 483, 711, 1201
Eco130I	CCWWGG	2 cut(s)	204, 1347
Eco31I	GGTCTC	2 cut(s)	741, 1357
Eco47I	GGWCC	2 cut(s)	4, 685
Eco57I	CTGAAG	3 cut(s)	39, 104, 1146
Eco81I	CCTNAGG	1 cut(s)	1227
Eco91I	GGTNACC	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	656
EcoRI	GAATTC	2 cut(s)	452, 951
EcoRII	CCWGG	3 cut(s)	621, 652, 660
EcoT14I	CCWWGG	2 cut(s)	204, 1347
EcoT22I	ATGCAT	2 cut(s)	435, 1273
ErhI	CCWWGG	2 cut(s)	204, 1347
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	2 cut(s)	296, 829
FauNDI	CATATG	1 cut(s)	1273
FblI	GTMKAC	3 cut(s)	36, 534, 1513
Fnu4HI	GCNGC	3 cut(s)	372, 756, 765
FokI	GGATG	4 cut(s)	92, 152, 345, 691
Fsp4HI	GCNGC	3 cut(s)	372, 756, 765
FspBI	CTAG	3 cut(s)	318, 335, 779
GluI	GCNGC	3 cut(s)	372, 756, 765
HaeIII	GGCC	2 cut(s)	773, 1224
HapII	CCGG	1 cut(s)	1494
HgaI	GACGC	2 cut(s)	83, 1033
Hin1I	GRCGYC	1 cut(s)	1241
HincII	GTYRAC	5 cut(s)	37, 562, 1023, 1338, 1514
HindII	GTYRAC	5 cut(s)	37, 562, 1023, 1338, 1514
HinfI	GANTC	5 cut(s)	513, 1094, 1261, 1339, 1412
HpaII	CCGG	1 cut(s)	1494
HphI	GGTGA	7 cut(s)	137, 168, 229, 272, 1191, 1259, 1478
Hpy188III	TCNNGA	7 cut(s)	328, 617, 1145, 1253, 1265, 1379, 1409
HpyAV	CCTTC	5 cut(s)	140, 431, 1011, 1121, 1517
HpyCH4III	ACNGT	9 cut(s)	310, 367, 532, 580, 842, 934, 962, 1457, 1511
HpyCH4IV	ACGT	1 cut(s)	1241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	761, 764, 770, 1436
HpyF3I	CTNAG	6 cut(s)	606, 907, 1101, 1160, 1212, 1227
HpySE526I	ACGT	1 cut(s)	1241
Hsp92I	GRCGYC	1 cut(s)	1241
Kzo9I	GATC	4 cut(s)	492, 625, 1112, 1249
LguI	GCTCTTC	1 cut(s)	711
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	3 cut(s)	358, 767, 776
LweI	GCATC	4 cut(s)	190, 245, 357, 1258
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	3 cut(s)	318, 335, 779
MaeII	ACGT	1 cut(s)	1241
MalI	GATC	4 cut(s)	494, 627, 1114, 1251
MboI	GATC	4 cut(s)	492, 625, 1112, 1249
MfeI	CAATTG	1 cut(s)	629
MluCI	AATT	8 cut(s)	30, 352, 452, 467, 629, 951, 1068, 1366
MluI	ACGCGT	2 cut(s)	92, 1025
MlyI	GAGTC	3 cut(s)	522, 1103, 1333
MmeI	TCCRAC	1 cut(s)	386
Mph1103I	ATGCAT	2 cut(s)	435, 1273
MseI	TTAA	7 cut(s)	270, 390, 552, 995, 1004, 1071, 1528
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	1494
MspR9I	CCNGG	3 cut(s)	623, 654, 662
MunI	CAATTG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	3 cut(s)	623, 654, 662
MvnI	CGCG	2 cut(s)	94, 1027
MwoI	GCNNNNNNNGC	4 cut(s)	761, 764, 770, 1436
NcoI	CCATGG	1 cut(s)	1347
NdeI	CATATG	1 cut(s)	1273
NdeII	GATC	4 cut(s)	492, 625, 1112, 1249
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	6 cut(s)	125, 304, 514, 592, 783, 836
NsiI	ATGCAT	2 cut(s)	435, 1273
NspI	RCATGY	3 cut(s)	158, 575, 1492
PagI	TCATGA	3 cut(s)	327, 616, 1144
PciI	ACATGT	2 cut(s)	571, 1488
PciSI	GCTCTTC	1 cut(s)	711
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	2 cut(s)	1261, 1412
PflMI	CCANNNNNTGG	2 cut(s)	893, 1393
PkrI	GCNGC	3 cut(s)	373, 757, 766
PleI	GAGTC	3 cut(s)	521, 1102, 1333
PpsI	GAGTC	3 cut(s)	521, 1102, 1333
PscI	ACATGT	2 cut(s)	571, 1488
Psp6I	CCWGG	3 cut(s)	621, 652, 660
PspEI	GGTNACC	1 cut(s)	656
PspGI	CCWGG	3 cut(s)	621, 652, 660
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	4, 685, 1223
RsaI	GTAC	2 cut(s)	1158, 1459
RsaNI	GTAC	2 cut(s)	1157, 1458
RseI	CAYNNNNRTG	1 cut(s)	195
SalI	GTCGAC	2 cut(s)	35, 1512
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	7 cut(s)	270, 390, 552, 995, 1004, 1071, 1528
SatI	GCNGC	3 cut(s)	372, 756, 765
Sau3AI	GATC	4 cut(s)	492, 625, 1112, 1249
Sau96I	GGNCC	3 cut(s)	4, 685, 1223
ScaI	AGTACT	1 cut(s)	1158
SchI	GAGTC	3 cut(s)	522, 1103, 1333
ScrFI	CCNGG	3 cut(s)	623, 654, 662
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	4 cut(s)	190, 245, 357, 1258
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	4, 685
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	1253
SmoI	CTYRAG	1 cut(s)	1253
Sse9I	AATT	8 cut(s)	30, 352, 452, 467, 629, 951, 1068, 1366
SspMI	CTAG	3 cut(s)	318, 335, 779
StyD4I	CCNGG	3 cut(s)	621, 652, 660
StyI	CCWWGG	2 cut(s)	204, 1347
TaaI	ACNGT	9 cut(s)	310, 367, 532, 580, 842, 934, 962, 1457, 1511
TaiI	ACGT	1 cut(s)	1244
TaqI	TCGA	4 cut(s)	36, 456, 990, 1513
TaqII	GACCGA	1 cut(s)	702
TasI	AATT	8 cut(s)	30, 352, 452, 467, 629, 951, 1068, 1366
TatI	WGTACW	2 cut(s)	1156, 1457
TfiI	GAWTC	2 cut(s)	1261, 1412
Tru1I	TTAA	7 cut(s)	270, 390, 552, 995, 1004, 1071, 1528
Tru9I	TTAA	7 cut(s)	270, 390, 552, 995, 1004, 1071, 1528
TscAI	CASTG	4 cut(s)	313, 841, 967, 1398
TseFI	GTSAC	6 cut(s)	125, 304, 514, 592, 783, 836
TseI	GCWGC	3 cut(s)	371, 755, 764
Tsp45I	GTSAC	6 cut(s)	125, 304, 514, 592, 783, 836
TspDTI	ATGAA	8 cut(s)	96, 344, 450, 537, 1133, 1161, 1196, 1298
TspRI	CASTG	4 cut(s)	313, 841, 967, 1398
Van91I	CCANNNNNTGG	2 cut(s)	893, 1393
VpaK11BI	GGWCC	2 cut(s)	4, 685
XapI	RAATTY	2 cut(s)	452, 951
XceI	RCATGY	3 cut(s)	158, 575, 1492
XmiI	GTMKAC	3 cut(s)	36, 534, 1513
XspI	CTAG	3 cut(s)	318, 335, 779
ZraI	GACGTC	1 cut(s)	1242
ZrmI	AGTACT	1 cut(s)	1158
Zsp2I	ATGCAT	2 cut(s)	435, 1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.