Rorug03G0084600

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006939
Physical Location & Seq
Reverse (-)
6546049 .. 6547666
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0084600.1

Sequence Viewer

Length: 966 bp
ATGGCTTGTCGGATAATCATGTTCTACCGGTACTATGTTCCTCATCTACTACTTCGTCATCAGAATATCCAAATCTTGAAGCCCAAGCTTTCATTTCGAATTTCAAGGGCATCATCTTACCATTATTACCACAACCTTAACCCTAGTGATACCCAAACCAATTTCCCCATCAAGCAAAAACTCTCTTCCTTCATTACAGACTCTGACATCCAAGCTCAATTTTCTCACCAAGATCCGGGTGTTGCCCGGATAAACAATGGCAGCTTTGGTTGCTCCCCTGCTTTTGTTATCTCTGCATTGCAACAATGGCAACTCAAATGGCCAGGCCAACCGGACCATTTCTACTTCAATGAGCTCCACAAGGGGATACTCAAATCAAGAAACACAGTTAAAGAACTTATCAATGCAGAAGATGTTGATGAAATTTCCATTGTAGATAATGCCACCACAGCAGTAGCCATAGTCTTGCAGCAGATGCAGTGGGCCTTCTCTGAAGGCAAATTCAAGAAAGGGGATGCTGTCATCATACTGCAATGTGCTTATGGCGCGGTGTGGAACTCGATCAAGGCCTATTTTTCGCGTGCTGGCGGGTTTGAAGGCGGTATTAAGGGAATCAAAAGGAGGAATCATGATGTTGTTGTTGGGATGGGTAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCTGCCAGATATGTGTGCAAGCATGATCATGGTGGGAATACCAGCTTGTTTGGAGGTTTCAAGTGATGATGATGCTTTGAAGTTAAGGACACATTTAAGGGAGAAATTTGGTGTTGAAGTCCACATATATTACCAGATGCCAAAACATGAAGAGGTGGCAACAACAACGAGTTCAGTGGAGCCTGAAGAAGTCCATATCATGAATAACAGGAGCCATTACCTCTCCGTCTCCTGCATACTGCTAGTGGCAATGGTTTCGGTACCATTAATATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

321

Amino Acids

36.14

Weight (kDa)

8.63

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 93 - 188 7.4e-06 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 949
AccB1I GGYRCC 1 cut(s) 949
AccII CGCG 2 cut(s) 548, 580
AciI CCGC 3 cut(s) 548, 588, 600
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 4 cut(s) 99, 423, 500, 794
AcuI CTGAAG 2 cut(s) 513, 894
AfaI GTAC 2 cut(s) 32, 951
AfiI CCNNNNNNNGG 2 cut(s) 235, 684
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 8 cut(s) 79, 105, 349, 505, 596, 750, 769, 806
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 5 cut(s) 88, 215, 264, 355, 734
AluI AGCT 5 cut(s) 88, 215, 264, 355, 734
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 693, 922
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 4 cut(s) 320, 325, 483, 567
ApeKI GCWGC 2 cut(s) 261, 469
ApoI RAATTY 4 cut(s) 99, 423, 500, 794
AseI ATTAAT 1 cut(s) 956
AsiGI ACCGGT 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 949
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 334, 483
AsuC2I CCSGG 2 cut(s) 237, 247
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 334
BalI TGGCCA 1 cut(s) 322
BanI GGYRCC 1 cut(s) 949
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 273, 481
BccI CCATC 2 cut(s) 176, 640
BcgI CGANNNNNNTGC 2 cut(s) 927, 961
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 2 cut(s) 237, 247
BcoDI GTCTC 2 cut(s) 693, 922
BfaI CTAG 3 cut(s) 144, 932, 964
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 2 cut(s) 262, 470
BlsI GCNGC 2 cut(s) 263, 471
Bme1390I CCNGG 3 cut(s) 237, 247, 324
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 334, 483
BmiI GGNNCC 4 cut(s) 676, 870, 902, 951
BmrFI CCNGG 3 cut(s) 237, 247, 324
BmsI GCATC 5 cut(s) 119, 465, 505, 751, 816
Bpu14I TTCGAA 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 237, 247
BsaI GGTCTC 1 cut(s) 693
BsaWI WCCGGW 2 cut(s) 27, 331
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 684
Bse118I RCCGGY 1 cut(s) 27
Bse3DI GCAATG 3 cut(s) 296, 539, 945
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 3 cut(s) 207, 520, 651
BseLI CCNNNNNNNGG 2 cut(s) 235, 684
BseMI GCAATG 3 cut(s) 296, 539, 945
BseXI GCAGC 2 cut(s) 273, 481
Bsh1236I CGCG 2 cut(s) 548, 580
BshFI GGCC 4 cut(s) 322, 327, 485, 569
BshNI GGYRCC 1 cut(s) 949
BshTI ACCGGT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 4 cut(s) 28, 236, 247, 332
BslI CCNNNNNNNGG 2 cut(s) 235, 684
BsmAI GTCTC 2 cut(s) 693, 922
BsmBI CGTCTC 1 cut(s) 922
BsnI GGCC 4 cut(s) 322, 327, 485, 569
Bso31I GGTCTC 1 cut(s) 693
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 232, 561, 714
BspACI CCGC 3 cut(s) 548, 588, 600
BspANI GGCC 4 cut(s) 322, 327, 485, 569
BspFNI CGCG 2 cut(s) 548, 580
BspHI TCATGA 2 cut(s) 628, 888
BspLI GGNNCC 4 cut(s) 676, 870, 902, 951
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 949
BspTNI GGTCTC 1 cut(s) 693
BsrDI GCAATG 3 cut(s) 296, 539, 945
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 3 cut(s) 232, 561, 714
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 190, 834
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 582, 586, 709
BstF5I GGATG 3 cut(s) 207, 520, 651
BstFNI CGCG 2 cut(s) 548, 580
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 3 cut(s) 235, 564, 717
BstMAI GTCTC 2 cut(s) 693, 922
BstMBI GATC 3 cut(s) 232, 561, 714
BstMWI GCNNNNNNNGC 5 cut(s) 270, 307, 449, 475, 545
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 235, 245, 322
BstUI CGCG 2 cut(s) 548, 580
BstV1I GCAGC 2 cut(s) 273, 481
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 4 cut(s) 322, 327, 485, 569
BtsCI GGATG 3 cut(s) 207, 520, 651
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 2 cut(s) 485, 870
Cac8I GCNNGC 3 cut(s) 582, 586, 709
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 2 cut(s) 628, 888
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 334, 483
Csp6I GTAC 2 cut(s) 31, 950
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 6 cut(s) 19, 629, 712, 718, 836, 889
CviQI GTAC 2 cut(s) 31, 950
DpnI GATC 3 cut(s) 234, 563, 716
DpnII GATC 3 cut(s) 232, 561, 714
EaeI YGGCCR 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 190, 834
EarI CTCTTC 2 cut(s) 190, 834
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 513, 894
EcoICRI GAGCTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 922
FaeI CATG 6 cut(s) 22, 632, 715, 721, 839, 892
FatI CATG 6 cut(s) 18, 628, 711, 717, 835, 888
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 2 cut(s) 262, 470
FokI GGATG 3 cut(s) 194, 527, 658
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 262, 470
FspBI CTAG 3 cut(s) 144, 932, 964
GlaI GCGC 1 cut(s) 547
GluI GCNGC 2 cut(s) 262, 470
HaeIII GGCC 4 cut(s) 322, 327, 485, 569
HapII CCGG 4 cut(s) 28, 236, 247, 332
HhaI GCGC 1 cut(s) 548
Hin1II CATG 6 cut(s) 22, 632, 715, 721, 839, 892
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 3 cut(s) 200, 612, 625
HpaII CCGG 4 cut(s) 28, 236, 247, 332
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 811
Hpy188I TCNGA 4 cut(s) 12, 63, 205, 493
Hpy188III TCNNGA 5 cut(s) 76, 378, 505, 629, 889
Hpy8I GTNNAC 1 cut(s) 811
HpyAV CCTTC 4 cut(s) 199, 488, 496, 590
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 8 cut(s) 296, 301, 407, 469, 478, 532, 707, 924
HpyF10VI GCNNNNNNNGC 5 cut(s) 270, 307, 449, 475, 545
Hsp92II CATG 6 cut(s) 22, 632, 715, 721, 839, 892
HspAI GCGC 1 cut(s) 546
KpnI GGTACC 1 cut(s) 953
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 3 cut(s) 232, 561, 714
LmnI GCTCC 4 cut(s) 278, 360, 868, 900
Lsp1109I GCAGC 2 cut(s) 273, 481
LweI GCATC 5 cut(s) 119, 465, 505, 751, 816
MaeI CTAG 3 cut(s) 144, 932, 964
MalI GATC 3 cut(s) 234, 563, 716
MboI GATC 3 cut(s) 232, 561, 714
MboII GAAGA 4 cut(s) 177, 422, 851, 887
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 322
MluCI AATT 6 cut(s) 99, 160, 218, 423, 500, 794
MluNI TGGCCA 1 cut(s) 322
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 5 cut(s) 51, 615, 736, 835, 920
Mox20I TGGCCA 1 cut(s) 322
MscI TGGCCA 1 cut(s) 322
MseI TTAA 6 cut(s) 138, 390, 606, 773, 785, 956
MslI CAYNNNNRTG 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 322
MspI CCGG 4 cut(s) 28, 236, 247, 332
MspR9I CCNGG 3 cut(s) 237, 247, 324
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 2 cut(s) 548, 580
MwoI GCNNNNNNNGC 5 cut(s) 270, 307, 449, 475, 545
NciI CCSGG 2 cut(s) 237, 247
NdeII GATC 3 cut(s) 232, 561, 714
NlaIII CATG 6 cut(s) 22, 632, 715, 721, 839, 892
NlaIV GGNNCC 4 cut(s) 676, 870, 902, 951
NspV TTCGAA 1 cut(s) 97
PagI TCATGA 2 cut(s) 628, 888
PceI AGGCCT 1 cut(s) 569
PfeI GAWTC 2 cut(s) 612, 625
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 2 cut(s) 263, 471
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 4 cut(s) 676, 870, 902, 951
PspPI GGNCC 2 cut(s) 334, 483
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 32, 951
RsaNI GTAC 2 cut(s) 31, 950
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 6 cut(s) 138, 390, 606, 773, 785, 956
SatI GCNGC 2 cut(s) 262, 470
Sau3AI GATC 3 cut(s) 232, 561, 714
Sau96I GGNCC 2 cut(s) 334, 483
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 237, 247, 324
SduI GDGCHC 1 cut(s) 357
SetI ASST 9 cut(s) 90, 138, 217, 266, 357, 736, 747, 846, 912
SfaNI GCATC 5 cut(s) 119, 465, 505, 751, 816
SfuI TTCGAA 1 cut(s) 97
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 716
Sse9I AATT 6 cut(s) 99, 160, 218, 423, 500, 794
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 3 cut(s) 548, 588, 600
SspMI CTAG 3 cut(s) 144, 932, 964
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 235, 245, 322
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 97, 560
TasI AATT 6 cut(s) 99, 160, 218, 423, 500, 794
TfiI GAWTC 2 cut(s) 612, 625
Tru1I TTAA 6 cut(s) 138, 390, 606, 773, 785, 956
Tru9I TTAA 6 cut(s) 138, 390, 606, 773, 785, 956
TscAI CASTG 2 cut(s) 485, 870
TseI GCWGC 2 cut(s) 261, 469
TspDTI ATGAA 5 cut(s) 81, 181, 435, 852, 905
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 2 cut(s) 485, 870
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 956
XapI RAATTY 4 cut(s) 99, 423, 500, 794
XspI CTAG 3 cut(s) 144, 932, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.