Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007982

Physical Location & Seq

Genomic Coordinates Reverse (-)

26442067 .. 26444199

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G284800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCGTGCCTTAACATCTCAGCTAACGTCAGCCTGGAAGGAGTAGACACCTCCTCTATCCTCTCCGAAGCCACCTCCACCGTCGCCAAGATCATCAGCAAGCCCGAGGCCTATGTGATGATTGTGCTGAAGGGATCAGTACCCATAGCTTTTGGTGGGACTGAGCAGCCAGCTGCCTATGGTGAGTTGGTCTCCATTGGTGGCCTTAACCCTGATGTGAACAAGAAGTTGAGTGCTGCAATTGCCGCAATTCTTGAGACTAAGTTGTCTGTGCCCAAGTCACGATTTTTCCTCAAGTTCTATGACACCAAGGCCCATCAAAGTCAAGAATATGCACAGTGTTTGCATGCTTTACACCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 map00350 map00360

Pfam Domains

Protein Families

MIF

Protein Analysis

122

Amino Acids

12.89

Weight (kDa)

6.82

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01650 AT5G01650 AT5G01650 AT5G01650
fragaria_vesca	FvH4_6g10620 FvH4_6g10620
malus_domestica	MD04G1166600.v1.1
prunus_persica	Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1
pyrus_communis	pycom04g14800 pycom12g16970
rosa_chinensis	RchiOBHm_Chr3g0461621
rosa_laevigata	RLG00000024913
rosa_multiflora	Rmu_ssc0000292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418090 Rroxscaffold_6G00418460
rosa_rugosa	Rorug03G0052400 Rorug03G0052500 Rorug03G0052600
rosa_samantha	Rh3AG110600 Rh3CG115700 Rh3DG115600
rosa_wichuraiana	Rw3G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	23, 149, 173
AluI	AGCT	3 cut(s)	23, 149, 173
Alw26I	GTCTC	2 cut(s)	196, 251
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	3 cut(s)	108, 202, 312
ApeKI	GCWGC	3 cut(s)	166, 173, 236
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	160, 178, 223
BccI	CCATC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	196, 251
BfaI	CTAG	1 cut(s)	364
BisI	GCNGC	4 cut(s)	167, 174, 237, 246
BlsI	GCNGC	4 cut(s)	168, 175, 238, 247
Bme1390I	CCNGG	1 cut(s)	35
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpuEI	CTTGAG	2 cut(s)	275, 278
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	105, 309
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	105, 309
BseMII	CTCAG	2 cut(s)	33, 153
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	160, 178, 223
BshFI	GGCC	3 cut(s)	110, 204, 314
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	196, 251
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	110, 204, 314
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	90, 134
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	3 cut(s)	110, 204, 314
BspCNI	CTCAG	2 cut(s)	32, 154
BspPI	GGATC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	105, 309
BssMI	GATC	2 cut(s)	90, 134
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	82, 339
BstC8I	GCNNGC	3 cut(s)	101, 171, 348
BstDEI	CTNAG	3 cut(s)	19, 162, 261
BstKTI	GATC	2 cut(s)	93, 137
BstMAI	GTCTC	2 cut(s)	196, 251
BstMBI	GATC	2 cut(s)	90, 134
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 245
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	160, 178, 223
BsuRI	GGCC	3 cut(s)	110, 204, 314
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	101, 171, 348
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	3 cut(s)	19, 162, 261
DpnI	GATC	2 cut(s)	92, 136
DpnII	GATC	2 cut(s)	90, 134
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	350
FaiI	YATR	6 cut(s)	114, 146, 180, 303, 333, 348
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	167, 174, 237, 246
Fsp4HI	GCNGC	4 cut(s)	167, 174, 237, 246
FspBI	CTAG	1 cut(s)	364
GluI	GCNGC	4 cut(s)	167, 174, 237, 246
HaeIII	GGCC	3 cut(s)	110, 204, 314
Hin1II	CATG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	46, 220
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	254, 282, 326
Hpy8I	GTNNAC	2 cut(s)	46, 220
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	32, 124
HpyCH4III	ACNGT	2 cut(s)	82, 339
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	239, 335, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 245
HpyF3I	CTNAG	3 cut(s)	19, 162, 261
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	350
Kzo9I	GATC	2 cut(s)	90, 134
LpnPI	CCDG	4 cut(s)	20, 47, 183, 225
Lsp1109I	GCAGC	3 cut(s)	160, 178, 223
MaeI	CTAG	1 cut(s)	364
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	92, 136
MboI	GATC	2 cut(s)	90, 134
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	240, 249
MnlI	CCTC	6 cut(s)	61, 64, 71, 85, 100, 302
MseI	TTAA	2 cut(s)	12, 207
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	242, 245
NdeII	GATC	2 cut(s)	90, 134
NlaIII	CATG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	168, 175, 238, 247
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	12, 207
SatI	GCNGC	4 cut(s)	167, 174, 237, 246
Sau3AI	GATC	2 cut(s)	90, 134
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	6 cut(s)	25, 30, 53, 77, 151, 175
SmlI	CTYRAG	2 cut(s)	254, 293
SmoI	CTYRAG	2 cut(s)	254, 293
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	2 cut(s)	240, 249
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	364
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	82, 339
TaiI	ACGT	1 cut(s)	30
TasI	AATT	2 cut(s)	240, 249
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	12, 207
Tru9I	TTAA	2 cut(s)	12, 207
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	3 cut(s)	166, 173, 236
Tsp45I	GTSAC	1 cut(s)	279
TspRI	CASTG	1 cut(s)	344
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.