Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007982

Physical Location & Seq

Genomic Coordinates Reverse (-)

19239822 .. 19241515

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCGTGCCTGAACATTTCAGCTAACGTGAACCTGGACGGCGTCGACACCTCCGCCGTCCTCTCCGAAGCCACCTCCACCGTCGCCAAGATCATCGGCAAACCCGAGGCTTATGTGATGATTGTTCTGAAGGGATCGGTACCCATATCTTTTGGCGGGACTGAGGAGCCAGCTGCCTATGGGGAGTTGGTCTCCATTGGCGGCCTTAATCCTGATGTGAACAAGAAGTTGAGTGCTGCAATTGCTGCAATTCTCGAGACAAAGTTGTCCGTGCCCAAGTCACGATTTTTTCTCAAGTTCTATGACACCAAGGGTTCCAACTTTGGATGGAACGGGTCTACCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 map00350 map00360

Pfam Domains

Protein Families

MIF

Protein Analysis

116

Amino Acids

12.06

Weight (kDa)

6.19

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01650 AT5G01650 AT5G01650 AT5G01650
fragaria_vesca	FvH4_6g10620 FvH4_6g10620
malus_domestica	MD04G1166600.v1.1
prunus_persica	Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1
pyrus_communis	pycom04g14800 pycom12g16970
rosa_chinensis	RchiOBHm_Chr3g0461621
rosa_laevigata	RLG00000024913
rosa_multiflora	Rmu_ssc0000292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418090 Rroxscaffold_6G00418460
rosa_rugosa	Rorug03G0052400 Rorug03G0052500 Rorug03G0052600
rosa_samantha	Rh3AG110600 Rh3CG115700 Rh3DG115600
rosa_wichuraiana	Rw3G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
Acc65I	GGTACC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	139
AccI	GTMKAC	2 cut(s)	45, 338
AciI	CCGC	3 cut(s)	54, 156, 201
AclWI	GGATC	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	23, 173
AluI	AGCT	2 cut(s)	23, 173
Alw26I	GTCTC	2 cut(s)	196, 251
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	2 cut(s)	104, 254
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	173, 236, 245
Asp718I	GGTACC	1 cut(s)	139
AvaI	CYCGRG	2 cut(s)	104, 254
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	160, 223, 232
BccI	CCATC	1 cut(s)	321
BceAI	ACGGC	2 cut(s)	41, 55
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	196, 251
BisI	GCNGC	4 cut(s)	174, 202, 237, 246
BlsI	GCNGC	4 cut(s)	175, 203, 238, 247
Bme1390I	CCNGG	1 cut(s)	35
BmeT110I	CYCGRG	2 cut(s)	104, 254
BmiI	GGNNCC	3 cut(s)	141, 168, 316
BmrFI	CCNGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpuEI	CTTGAG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	105, 309
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	105, 309
BseGI	GGATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	160, 223, 232
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	139
BsiHKCI	CYCGRG	2 cut(s)	104, 254
BslFI	GGGAC	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	196, 251
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	2 cut(s)	104, 254
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	90, 134
BspACI	CCGC	3 cut(s)	54, 156, 201
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	141, 168, 316
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	105, 309
BssMI	GATC	2 cut(s)	90, 134
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	2 cut(s)	93, 137
BstMAI	GTCTC	2 cut(s)	196, 251
BstMBI	GATC	2 cut(s)	90, 134
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 245
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	160, 223, 232
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	171
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	140
CviJI	RGCY	6 cut(s)	23, 71, 110, 169, 173, 204
CviKI_1	RGCY	6 cut(s)	23, 71, 110, 169, 173, 204
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	92, 136
DpnII	GATC	2 cut(s)	90, 134
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	2 cut(s)	104, 254
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaiI	YATR	4 cut(s)	114, 146, 180, 303
FaqI	GGGAC	1 cut(s)	172
FauI	CCCGC	1 cut(s)	149
FblI	GTMKAC	2 cut(s)	45, 338
Fnu4HI	GCNGC	4 cut(s)	174, 202, 237, 246
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	174, 202, 237, 246
GluI	GCNGC	4 cut(s)	174, 202, 237, 246
HaeIII	GGCC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	31, 46, 220, 339
Hpy188I	TCNGA	2 cut(s)	67, 129
Hpy188III	TCNNGA	4 cut(s)	212, 254, 256, 282
Hpy8I	GTNNAC	4 cut(s)	31, 46, 220, 339
Hpy99I	CGWCG	2 cut(s)	47, 86
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	239, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 245
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	42
KpnI	GGTACC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	90, 134
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	20, 23, 47, 183, 225
Lsp1109I	GCAGC	3 cut(s)	160, 223, 232
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	92, 136
MboI	GATC	2 cut(s)	90, 134
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	240, 249
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	5 cut(s)	61, 71, 85, 100, 157
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	242, 245
NdeII	GATC	2 cut(s)	90, 134
NlaIV	GGNNCC	3 cut(s)	141, 168, 316
NmuCI	GTSAC	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	175, 203, 238, 247
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	141, 168, 316
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	174, 202, 237, 246
Sau3AI	GATC	2 cut(s)	90, 134
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	7 cut(s)	25, 30, 36, 53, 77, 175, 344
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	254, 293
SmoI	CTYRAG	2 cut(s)	254, 293
Sse9I	AATT	2 cut(s)	240, 249
SsiI	CCGC	3 cut(s)	54, 156, 201
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	45, 255
TasI	AATT	2 cut(s)	240, 249
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	3 cut(s)	173, 236, 245
Tsp45I	GTSAC	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	254
XmiI	GTMKAC	2 cut(s)	45, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.