Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000292.1

Orthogroup ID

OG0007982

Physical Location & Seq

Genomic Coordinates Forward (+)

654 .. 1809

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000292.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgccgtgtttgaacatttcagcgaacgtcagcctggaaggagtggacacctcctccatcctctctgaagccacctccaccgtcgccaagatcatcggcaaacccgaggcttatgtgatgattgtgctgaagggatcagttcccatatcttttggagggactgagcagccagctgcctatggtgagttggtctccattggtggcctgagccctgatgtgaacaagaagttgagtgctgcgatttcctcaatccttgagaccaagttgtctgtgcccaagtcgcgattttttcttaagttctatgataccaagggctccaactttggatggaatggatctaccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 map00350 map00360

Pfam Domains

Protein Families

MIF

Protein Analysis

115

Amino Acids

12.08

Weight (kDa)

7.81

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01650 AT5G01650 AT5G01650 AT5G01650
fragaria_vesca	FvH4_6g10620 FvH4_6g10620
malus_domestica	MD04G1166600.v1.1
prunus_persica	Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1
pyrus_communis	pycom04g14800 pycom12g16970
rosa_chinensis	RchiOBHm_Chr3g0461621
rosa_laevigata	RLG00000024913
rosa_multiflora	Rmu_ssc0000292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418090 Rroxscaffold_6G00418460
rosa_rugosa	Rorug03G0052400 Rorug03G0052500 Rorug03G0052600
rosa_samantha	Rh3AG110600 Rh3CG115700 Rh3DG115600
rosa_wichuraiana	Rw3G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
AccII	CGCG	1 cut(s)	283
AclWI	GGATC	2 cut(s)	142, 343
AcuI	CTGAAG	2 cut(s)	87, 149
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	196, 251
AlwI	GGATC	2 cut(s)	142, 343
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	166, 173, 236
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	212, 317
BbvI	GCAGC	3 cut(s)	160, 178, 223
BccI	CCATC	2 cut(s)	65, 321
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	196, 251
BfaI	CTAG	1 cut(s)	346
BfrI	CTTAAG	1 cut(s)	293
BisI	GCNGC	3 cut(s)	167, 174, 237
BlsI	GCNGC	3 cut(s)	168, 175, 238
Bme1390I	CCNGG	1 cut(s)	35
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	2 cut(s)	196, 251
BsaJI	CCNNGG	2 cut(s)	105, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	105, 309
BseGI	GGATG	2 cut(s)	57, 332
BseMII	CTCAG	2 cut(s)	153, 197
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	160, 178, 223
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	196, 251
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	2 cut(s)	196, 251
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	3 cut(s)	212, 276, 317
Bsp143I	GATC	3 cut(s)	90, 134, 335
Bsp68I	TCGCGA	1 cut(s)	283
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	154, 198
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	142, 343
BspTI	CTTAAG	1 cut(s)	293
BspTNI	GGTCTC	2 cut(s)	196, 251
BssECI	CCNNGG	2 cut(s)	105, 309
BssMI	GATC	3 cut(s)	90, 134, 335
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	162, 206
BstF5I	GGATG	2 cut(s)	57, 332
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	3 cut(s)	93, 137, 338
BstMAI	GTCTC	2 cut(s)	196, 251
BstMBI	GATC	3 cut(s)	90, 134, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	3 cut(s)	160, 178, 223
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	57, 332
BtuMI	TCGCGA	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	171
CviJI	RGCY	8 cut(s)	33, 71, 110, 169, 173, 204, 210, 315
CviKI_1	RGCY	8 cut(s)	33, 71, 110, 169, 173, 204, 210, 315
DdeI	CTNAG	2 cut(s)	162, 206
DpnI	GATC	3 cut(s)	92, 136, 337
DpnII	GATC	3 cut(s)	90, 134, 335
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	2 cut(s)	212, 317
Eco31I	GGTCTC	2 cut(s)	196, 251
Eco57I	CTGAAG	2 cut(s)	87, 149
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	2 cut(s)	212, 317
ErhI	CCWWGG	1 cut(s)	309
FaiI	YATR	4 cut(s)	114, 146, 180, 303
FaqI	GGGAC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	167, 174, 237
FokI	GGATG	2 cut(s)	44, 339
FriOI	GRGCYC	2 cut(s)	212, 317
Fsp4HI	GCNGC	3 cut(s)	167, 174, 237
FspBI	CTAG	1 cut(s)	346
GluI	GCNGC	3 cut(s)	167, 174, 237
HaeIII	GGCC	1 cut(s)	204
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	46, 220
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	2 cut(s)	46, 220
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	32, 124
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	2 cut(s)	162, 206
HpySE526I	ACGT	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	90, 134, 335
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	5 cut(s)	20, 47, 183, 218, 225
Lsp1109I	GCAGC	3 cut(s)	160, 178, 223
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	1 cut(s)	27
MalI	GATC	3 cut(s)	92, 136, 337
MboI	GATC	3 cut(s)	90, 134, 335
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	3 cut(s)	212, 276, 317
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	7 cut(s)	61, 64, 71, 85, 100, 149, 256
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	3 cut(s)	90, 134, 335
NlaIV	GGNNCC	1 cut(s)	316
NruI	TCGCGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	168, 175, 238
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	173
RruI	TCGCGA	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	3 cut(s)	167, 174, 237
Sau3AI	GATC	3 cut(s)	90, 134, 335
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	3 cut(s)	212, 276, 317
SetI	ASST	5 cut(s)	30, 53, 77, 175, 344
SmlI	CTYRAG	2 cut(s)	254, 293
SmoI	CTYRAG	2 cut(s)	254, 293
SspMI	CTAG	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	3 cut(s)	166, 173, 236
Vha464I	CTTAAG	1 cut(s)	293
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.