Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007982

Physical Location & Seq

Genomic Coordinates Forward (+)

4074867 .. 4075601

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0052500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTGCCCAAGGAGCTCGTGACCAAACTCCCATTGGCCACGTAGAGATTCCAGTTTCATTTCCATTAGCTACAGACCAAAACAGACTACCCCGAGTGCCTGAAGAAGATGACAGTTTTGACTACTCCGAAAGAACACAATGGATTCGGGCAGCTGTTTTGGGAGCTAATGATGGTTTGGTCTCTGTTGCATCACTAATGATGGGTGTTGGAGCTGTCAAACAAGACGTGAAAGTGATGCTCCTGGCCGGGTTTGCTGGGCTAGTAGCAGGGGCATGCAGCATGGCAATAGGGGAATTTGTCTCTGTGTACACTCAATATGACATAGAGATATCCCAAATGAAAAGAGAGATGATGAAAGGGAATGGTGGAAATGAGAATGCAGAAGAAGCAAAGAAGAAGAAGCTGCCAAACCCGGCACAGGCTGCCATAGCATCTGCAATTGCGTTTTCTATAGGTGCAGTGGTGCCTTTGTTGGGAGCTGCATTTATAAGAGAGCATAAGGTGAGGATGCTTGTGGTGGCTCTTTTGGCAAGTATTGCACTGGTAGTGTTCGGAGGGATCGGAGCAAGGTTGGGGAGGACACCCATGATCAAGTCTTGTGTTAGAGTACTCATTGGAGGATGGATGGCTATGGCTATCACCTTTGGACTCACAAAGTTGATTGGCTCTGCGGGTCTAGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 map00350 map00360

Pfam Domains

Protein Families

MIF

Protein Analysis

229

Amino Acids

24.16

Weight (kDa)

8.56

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	49 - 119	3.3e-23	VIT family
VIT1	PF01988	133 - 219	9e-18	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01650 AT5G01650 AT5G01650 AT5G01650
fragaria_vesca	FvH4_6g10620 FvH4_6g10620
malus_domestica	MD04G1166600.v1.1
prunus_persica	Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1 Prupe.6G284800_v2.0.a1
pyrus_communis	pycom04g14800 pycom12g16970
rosa_chinensis	RchiOBHm_Chr3g0461621
rosa_laevigata	RLG00000024913
rosa_multiflora	Rmu_ssc0000292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418090 Rroxscaffold_6G00418460
rosa_rugosa	Rorug03G0052400 Rorug03G0052500 Rorug03G0052600
rosa_samantha	Rh3AG110600 Rh3CG115700 Rh3DG115600
rosa_wichuraiana	Rw3G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	2 cut(s)	37, 246
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	311, 612
AfiI	CCNNNNNNNGG	2 cut(s)	421, 476
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	7 cut(s)	17, 71, 155, 167, 215, 406, 482
AluI	AGCT	7 cut(s)	17, 71, 155, 167, 215, 406, 482
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	187, 307
AlwI	GGATC	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	37, 246
ApeKI	GCWGC	6 cut(s)	5, 152, 279, 406, 425, 482
ApoI	RAATTY	1 cut(s)	296
AsuC2I	CCSGG	2 cut(s)	250, 416
AsuHPI	GGTGA	2 cut(s)	517, 634
AvaI	CYCGRG	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	5 cut(s)	164, 291, 393, 412, 469
BccI	CCATC	4 cut(s)	167, 196, 618, 622
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	2 cut(s)	250, 416
BcoDI	GTCTC	2 cut(s)	187, 307
BfaI	CTAG	2 cut(s)	263, 680
BfmI	CTRYAG	2 cut(s)	72, 453
BisI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
BlsI	GCNGC	6 cut(s)	7, 154, 281, 408, 427, 484
BmcAI	AGTACT	1 cut(s)	612
Bme1390I	CCNGG	3 cut(s)	245, 250, 416
BmeT110I	CYCGRG	1 cut(s)	93
BmgBI	CACGTC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	3 cut(s)	245, 250, 416
BmsI	GCATC	4 cut(s)	200, 228, 443, 501
BpuMI	CCSGG	2 cut(s)	250, 416
BsaAI	YACGTR	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 476
Bse1I	ACTGG	2 cut(s)	53, 549
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	516, 629, 633
BseLI	CCNNNNNNNGG	2 cut(s)	421, 476
BseNI	ACTGG	2 cut(s)	53, 549
BseXI	GCAGC	5 cut(s)	164, 291, 393, 412, 469
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	39, 248
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	249, 416
BslI	CCNNNNNNNGG	2 cut(s)	421, 476
BsmAI	GTCTC	2 cut(s)	187, 307
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	39, 248
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	561, 591
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	2 cut(s)	39, 248
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	53, 549
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	561, 591
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	116
BstAPI	GCANNNNNTGC	2 cut(s)	425, 539
BstAUI	TGTACA	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	516, 629, 633
BstKTI	GATC	2 cut(s)	564, 594
BstMAI	GTCTC	2 cut(s)	187, 307
BstMBI	GATC	2 cut(s)	561, 591
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 254, 389, 425, 431, 530, 539
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	3 cut(s)	243, 248, 414
BstSFI	CTRYAG	2 cut(s)	72, 453
BstV1I	GCAGC	5 cut(s)	164, 291, 393, 412, 469
BsuRI	GGCC	2 cut(s)	39, 248
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	516, 629, 633
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	468, 542
Cac8I	GCNNGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	310, 611
CviAII	CATG	3 cut(s)	276, 283, 589
CviQI	GTAC	2 cut(s)	310, 611
DpnI	GATC	2 cut(s)	563, 593
DpnII	GATC	2 cut(s)	561, 591
EaeI	YGGCCR	2 cut(s)	37, 246
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	3 cut(s)	279, 286, 592
FatI	CATG	3 cut(s)	275, 282, 588
FauI	CCCGC	1 cut(s)	667
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
FokI	GGATG	3 cut(s)	523, 636, 640
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
FspBI	CTAG	2 cut(s)	263, 680
GluI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	39, 248
HapII	CCGG	2 cut(s)	249, 416
Hin1II	CATG	3 cut(s)	279, 286, 592
HinfI	GANTC	3 cut(s)	49, 145, 651
HpaII	CCGG	2 cut(s)	249, 416
HphI	GGTGA	2 cut(s)	517, 634
Hpy166II	GTNNAC	2 cut(s)	310, 312
Hpy188I	TCNGA	3 cut(s)	130, 557, 566
Hpy188III	TCNNGA	2 cut(s)	20, 680
Hpy8I	GTNNAC	2 cut(s)	310, 312
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	2 cut(s)	42, 228
HpyCH4V	TGCA	7 cut(s)	191, 279, 383, 440, 461, 485, 542
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 254, 389, 425, 431, 530, 539
HpySE526I	ACGT	2 cut(s)	42, 228
Hsp92II	CATG	3 cut(s)	279, 286, 592
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	561, 591
LmnI	GCTCC	6 cut(s)	14, 164, 212, 246, 479, 566
Lsp1109I	GCAGC	5 cut(s)	164, 291, 393, 412, 469
LweI	GCATC	4 cut(s)	200, 228, 443, 501
MaeI	CTAG	2 cut(s)	263, 680
MaeII	ACGT	2 cut(s)	42, 228
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	563, 593
MboI	GATC	2 cut(s)	561, 591
MboII	GAAGA	5 cut(s)	116, 119, 398, 409, 412
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	2 cut(s)	296, 441
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	4 cut(s)	501, 551, 573, 614
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	249, 416
MspR9I	CCNGG	3 cut(s)	245, 250, 416
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	7 cut(s)	14, 254, 389, 425, 431, 530, 539
NciI	CCSGG	2 cut(s)	250, 416
NdeII	GATC	2 cut(s)	561, 591
NlaIII	CATG	3 cut(s)	279, 286, 592
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	49, 145
PkrI	GCNGC	6 cut(s)	7, 154, 281, 408, 427, 484
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
Ppu21I	YACGTR	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	311, 612
RsaNI	GTAC	2 cut(s)	310, 611
SacI	GAGCTC	1 cut(s)	19
SatI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
Sau3AI	GATC	2 cut(s)	561, 591
ScaI	AGTACT	1 cut(s)	612
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	3 cut(s)	245, 250, 416
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	4 cut(s)	200, 228, 443, 501
SfcI	CTRYAG	2 cut(s)	72, 453
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	296, 441
SsiI	CCGC	1 cut(s)	674
SspMI	CTAG	2 cut(s)	263, 680
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	243, 248, 414
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	2 cut(s)	45, 231
TasI	AATT	2 cut(s)	296, 441
TatI	WGTACW	2 cut(s)	309, 610
TfiI	GAWTC	2 cut(s)	49, 145
TscAI	CASTG	2 cut(s)	468, 549
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	6 cut(s)	5, 152, 279, 406, 425, 482
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	48, 356, 371
TspRI	CASTG	2 cut(s)	468, 549
XapI	RAATTY	1 cut(s)	296
XbaI	TCTAGA	1 cut(s)	679
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	2 cut(s)	263, 680
ZrmI	AGTACT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.