Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005220

Physical Location & Seq

Genomic Coordinates Reverse (-)

28908174 .. 28912207

Gene Structure 4034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G331800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGGCAGGGAAAGCATTGAAGAAGGAAAATTATCAAATCCTCTGCTTGTCAAAAACATTGATTCTGAATCTCAAGTCTATGGCTATGGTGGTAGAGGTGAAAACAGTGGTGCTGGTAATGAACAACAAAGTGGAATTTTCTCATCGTCGGCCACGACCATGGTTGTGCTCAGCACTCTGGTTGCTGTGTCTGGTTCCTATGTTTTTGGGTCTGCGGTGGGATATTCCTCACCAGCTCGGTCTGGGGTCATGGATGATTTGGGCCTCACTGTGGCTGAGTACTCGGTTTTTGGTTCAATATTGACAATTGGAGCAATGATAGGAGCAGTAGTGAGTGGGAGAATAGCAGATTACATAGGTAGAAGAGGTGCAATGGCGTTTTCTGAGATATTCTGCATATTGGGATGGCTAGCCATCGCTTTCTCTAAGGTTGCTTGGTGGGCTGAGCTTGGAAGACTGTTGGTAGGATGTGGAATGGGACTTCTTTCTTATGTGGTGCCTATATACATAGCAGAAATAACACCAAAGAATCTGCGAGGAGGATTTACAACAGTTCATCAGTTGATGATTTGTTGTGGTGTGTCACTAACATATCTTATCGGGGCTTTTTTGAACTGGCGAGCTTTGGCCCTCATAGGAACTGTTCCTTGTGTTATACAGATCTTAGGTCTAGTTTTCATCCCAGAGTCTCCTAGATGGCTGGCAAAGATTGGTCAAGAGAAAAAGTGTGAAGATGCTCTCCAGAACCTTAGGGGGAAGAATGCTGATATTTCTCAAGAAAAATCTGAGATTAGAGACTATACAGAAACTCTGAAGCGGCCTTCAGAAGCAAGCATTCTTGACTTATTTCAAAGAAGATATGCGTATTCCGTCATAGTAGGAGTTGGCCTTATGGTACTGCAACAATTCGGAGGGGTTAATGGCATTGCCTTTTATGCAAGTACTATATTCATTTCAGCTGGATTTTCAGATAGTATTGGGACTATAGCTATGGTTGCTGTTCAGATTCCAATGACCGGTTTGGGTGTAATTTTGATGGATAAATCTGGAAGACGTCCACTTCTTCTGGTATCTTCAACAGGAACATGCTTAGGTTGCCTCCTTGTGGGGTTGTCATTCTTGTTGCAGAACCTTCAACAATGGAAGCACGTCACTCCCATCTTGGCGCTTGTTGGCATACTGGTATTTACAGGATCGTTCTCATTGGGCATGGGAGGAATTCCTTGGGTTATAATGTCAGAGATATTTCCCATAAACATGAAAGGCTCAGCTGGTAGCCTAGTAACATTGGTTAGCTGGTTAGGTTCTTGGATTGTCTCATATGCTTTTAATTTCCTAATGGATTGGAACTCAGCAGGAACTTTCTTCATGTTTTCATGCGTATCTGGTGTAACCATTCTATTTGTTGCAAAGCTGGTGCCAGAGACAAAGGGACGAACACTAGAAGAAATACAAACATCGATGAATCGGTTTTCAGAAAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

496

Amino Acids

53.24

Weight (kDa)

8.29

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730
fragaria_vesca	FvH4_6g05130 FvH4_6g05130
malus_domestica	MD12G1225300.v1.1
prunus_persica	Prupe.6G331800_v2.0.a1
pyrus_communis	pycom12g21040
rosa_chinensis	RchiOBHm_Chr3g0453671
rosa_laevigata	RLG00000025500
rosa_multiflora	Rmu_sc0003556.1_g000005
rosa_roxburghii	Rroxscaffold_6G00430590
rosa_rugosa	Rorug02G0650600 Rorug02G0650700 Rorug02G0650800.1 Rorug02G0650900 Rorug02G0651000
rosa_samantha	Rh3AG053600 Rh3BG055100 Rh3CG054300 Rh3DG055400
rosa_wichuraiana	Rw3G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1232
AatII	GACGTC	1 cut(s)	1057
AccB1I	GGYRCC	2 cut(s)	496, 1417
AciI	CCGC	2 cut(s)	215, 817
AclWI	GGATC	1 cut(s)	1201
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	135, 1218
AcuI	CTGAAG	2 cut(s)	807, 833
AcyI	GRCGYC	1 cut(s)	1054
AfaI	GTAC	3 cut(s)	281, 897, 943
AfiI	CCNNNNNNNGG	3 cut(s)	271, 1016, 1105
AgeI	ACCGGT	1 cut(s)	1016
AgsI	TTSAA	6 cut(s)	20, 297, 613, 851, 1077, 1136
AjiI	CACGTC	1 cut(s)	1150
AluBI	AGCT	8 cut(s)	236, 448, 623, 959, 989, 1271, 1296, 1414
AluI	AGCT	8 cut(s)	236, 448, 623, 959, 989, 1271, 1296, 1414
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	4 cut(s)	693, 789, 1321, 1418
AlwI	GGATC	1 cut(s)	1201
AoxI	GGCC	5 cut(s)	150, 262, 627, 818, 886
ApoI	RAATTY	2 cut(s)	135, 1218
AsiGI	ACCGGT	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	1168
AspS9I	GGNCC	2 cut(s)	262, 628
AsuHPI	GGTGA	2 cut(s)	110, 222
AsuNHI	GCTAGC	1 cut(s)	409
AxyI	CCTNAGG	1 cut(s)	749
BanI	GGYRCC	2 cut(s)	496, 1417
BbsI	GAAGAC	2 cut(s)	460, 1057
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	5 cut(s)	399, 422, 690, 1030, 1166
BcoDI	GTCTC	4 cut(s)	693, 789, 1321, 1418
BfaI	CTAG	5 cut(s)	410, 671, 693, 1280, 1442
BfmI	CTRYAG	1 cut(s)	984
BfoI	RGCGCY	1 cut(s)	1169
BglII	AGATCT	1 cut(s)	660
BisI	GCNGC	1 cut(s)	818
BlpI	GCTNAGC	3 cut(s)	170, 444, 1267
BlsI	GCNGC	1 cut(s)	819
BmcAI	AGTACT	2 cut(s)	281, 943
BmgBI	CACGTC	1 cut(s)	1150
BmgT120I	GGNCC	2 cut(s)	262, 628
BmiI	GGNNCC	3 cut(s)	196, 498, 1419
BmsI	GCATC	1 cut(s)	724
BmtI	GCTAGC	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	460, 1057
BpmI	CTGGAG	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	1090
Bpu1102I	GCTNAGC	3 cut(s)	170, 444, 1267
BpuEI	CTTGAG	2 cut(s)	57, 759
Bsa29I	ATCGAT	1 cut(s)	1460
BsaHI	GRCGYC	1 cut(s)	1054
BsaJI	CCNNGG	2 cut(s)	159, 1223
BsaWI	WCCGGW	1 cut(s)	1016
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 1016, 1105
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	2 cut(s)	620, 1185
Bse21I	CCTNAGG	1 cut(s)	749
Bse3DI	GCAATG	3 cut(s)	321, 378, 924
BseCI	ATCGAT	1 cut(s)	1460
BseDI	CCNNGG	2 cut(s)	159, 1223
BseGI	GGATG	4 cut(s)	259, 410, 473, 678
BseLI	CCNNNNNNNGG	3 cut(s)	271, 1016, 1105
BseMI	GCAATG	3 cut(s)	321, 378, 924
BseMII	CTCAG	7 cut(s)	184, 267, 375, 435, 777, 1281, 1365
BseNI	ACTGG	2 cut(s)	620, 1185
BseRI	GAGGAG	1 cut(s)	552
BshFI	GGCC	5 cut(s)	152, 264, 629, 820, 888
BshNI	GGYRCC	2 cut(s)	496, 1417
BshTI	ACCGGT	1 cut(s)	1016
BshVI	ATCGAT	1 cut(s)	1460
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	1017
BslFI	GGGAC	3 cut(s)	492, 994, 1446
BslI	CCNNNNNNNGG	3 cut(s)	271, 1016, 1105
BsmAI	GTCTC	4 cut(s)	693, 789, 1321, 1418
BsmFI	GGGAC	3 cut(s)	492, 994, 1446
BsmI	GAATGC	2 cut(s)	766, 834
BsnI	GGCC	5 cut(s)	152, 264, 629, 820, 888
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	660, 1193
Bsp1720I	GCTNAGC	3 cut(s)	170, 444, 1267
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	215, 817
BspANI	GGCC	5 cut(s)	152, 264, 629, 820, 888
BspCNI	CTCAG	7 cut(s)	183, 268, 376, 436, 778, 1280, 1364
BspDI	ATCGAT	1 cut(s)	1460
BspLI	GGNNCC	3 cut(s)	196, 498, 1419
BspOI	GCTAGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	1201
BspT107I	GGYRCC	2 cut(s)	496, 1417
BsrDI	GCAATG	3 cut(s)	321, 378, 924
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	2 cut(s)	620, 1185
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	2 cut(s)	159, 1223
BssMI	GATC	2 cut(s)	660, 1193
BssNI	GRCGYC	1 cut(s)	1054
BssT1I	CCWWGG	2 cut(s)	159, 1223
Bst4CI	ACNGT	5 cut(s)	107, 271, 459, 553, 643
Bst6I	CTCTTC	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	1054
BstC8I	GCNNGC	4 cut(s)	411, 621, 702, 832
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	4 cut(s)	259, 410, 473, 678
BstH2I	RGCGCY	1 cut(s)	1169
BstHHI	GCGC	1 cut(s)	1168
BstKTI	GATC	2 cut(s)	663, 1196
BstMAI	GTCTC	4 cut(s)	693, 789, 1321, 1418
BstMBI	GATC	2 cut(s)	660, 1193
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 440, 935, 995, 1095
BstNSI	RCATGY	1 cut(s)	1089
BstSFI	CTRYAG	1 cut(s)	984
BstV2I	GAAGAC	2 cut(s)	460, 1057
BstX2I	RGATCY	1 cut(s)	660
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	660
Bsu15I	ATCGAT	1 cut(s)	1460
Bsu36I	CCTNAGG	1 cut(s)	749
BsuRI	GGCC	5 cut(s)	152, 264, 629, 820, 888
BsuTUI	ATCGAT	1 cut(s)	1460
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	400
BtrI	CACGTC	1 cut(s)	1150
BtsCI	GGATG	4 cut(s)	259, 410, 473, 678
BtsIMutI	CAGTG	2 cut(s)	112, 267
Cac8I	GCNNGC	4 cut(s)	411, 621, 702, 832
CfoI	GCGC	1 cut(s)	1168
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	2 cut(s)	262, 628
ClaI	ATCGAT	1 cut(s)	1460
Csp6I	GTAC	3 cut(s)	280, 896, 942
CspAI	ACCGGT	1 cut(s)	1016
CviAII	CATG	7 cut(s)	160, 250, 1086, 1210, 1258, 1369, 1377
CviQI	GTAC	3 cut(s)	280, 896, 942
DpnI	GATC	2 cut(s)	662, 1195
DpnII	GATC	2 cut(s)	660, 1193
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	159, 1223
Eco57I	CTGAAG	2 cut(s)	807, 833
Eco81I	CCTNAGG	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	1218
EcoT14I	CCWWGG	2 cut(s)	159, 1223
ErhI	CCWWGG	2 cut(s)	159, 1223
FaeI	CATG	7 cut(s)	163, 253, 1089, 1213, 1261, 1372, 1380
FaqI	GGGAC	3 cut(s)	492, 994, 1446
FatI	CATG	7 cut(s)	159, 249, 1085, 1209, 1257, 1368, 1376
FauNDI	CATATG	1 cut(s)	1321
Fnu4HI	GCNGC	1 cut(s)	818
FokI	GGATG	4 cut(s)	266, 417, 480, 665
Fsp4HI	GCNGC	1 cut(s)	818
FspBI	CTAG	5 cut(s)	410, 671, 693, 1280, 1442
GlaI	GCGC	1 cut(s)	1167
GluI	GCNGC	1 cut(s)	818
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	1 cut(s)	1169
HaeIII	GGCC	5 cut(s)	152, 264, 629, 820, 888
HapII	CCGG	1 cut(s)	1017
HhaI	GCGC	1 cut(s)	1168
Hin1I	GRCGYC	1 cut(s)	1054
Hin1II	CATG	7 cut(s)	163, 253, 1089, 1213, 1261, 1372, 1380
Hin6I	GCGC	1 cut(s)	1166
HinP1I	GCGC	1 cut(s)	1166
HinfI	GANTC	6 cut(s)	62, 68, 529, 686, 1006, 1465
HpaII	CCGG	1 cut(s)	1017
HphI	GGTGA	2 cut(s)	110, 222
Hpy166II	GTNNAC	1 cut(s)	1058
Hpy188III	TCNNGA	5 cut(s)	716, 742, 776, 839, 1047
Hpy8I	GTNNAC	1 cut(s)	1058
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	3 cut(s)	17, 831, 1142
HpyCH4III	ACNGT	5 cut(s)	107, 271, 459, 553, 643
HpyCH4IV	ACGT	2 cut(s)	1054, 1149
HpyCH4V	TGCA	6 cut(s)	371, 396, 901, 938, 1126, 1409
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 440, 935, 995, 1095
HpySE526I	ACGT	2 cut(s)	1054, 1149
Hsp92I	GRCGYC	1 cut(s)	1054
Hsp92II	CATG	7 cut(s)	163, 253, 1089, 1213, 1261, 1372, 1380
HspAI	GCGC	1 cut(s)	1166
Kzo9I	GATC	2 cut(s)	660, 1193
LmnI	GCTCC	2 cut(s)	311, 323
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	5 cut(s)	410, 671, 693, 1280, 1442
MaeII	ACGT	2 cut(s)	1054, 1149
MaeIII	GTNAC	4 cut(s)	582, 1150, 1282, 1390
MalI	GATC	2 cut(s)	662, 1195
MboI	GATC	2 cut(s)	660, 1193
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	660
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	7 cut(s)	29, 135, 306, 905, 1029, 1218, 1330
MlyI	GAGTC	1 cut(s)	695
MseI	TTAA	2 cut(s)	918, 1329
MslI	CAYNNNNRTG	3 cut(s)	158, 164, 1256
MspA1I	CMGCKG	2 cut(s)	959, 1271
MspI	CCGG	1 cut(s)	1017
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	2 cut(s)	766, 834
MwoI	GCNNNNNNNGC	5 cut(s)	12, 440, 935, 995, 1095
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	1321
NdeII	GATC	2 cut(s)	660, 1193
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	7 cut(s)	163, 253, 1089, 1213, 1261, 1372, 1380
NlaIV	GGNNCC	3 cut(s)	196, 498, 1419
NmuCI	GTSAC	2 cut(s)	582, 1150
NspI	RCATGY	1 cut(s)	1089
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PctI	GAATGC	2 cut(s)	766, 834
PfeI	GAWTC	5 cut(s)	62, 68, 529, 1006, 1465
PinAI	ACCGGT	1 cut(s)	1016
PkrI	GCNGC	1 cut(s)	819
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	1232
PspN4I	GGNNCC	3 cut(s)	196, 498, 1419
PspPI	GGNCC	2 cut(s)	262, 628
PsuI	RGATCY	1 cut(s)	660
PvuII	CAGCTG	2 cut(s)	959, 1271
RsaI	GTAC	3 cut(s)	281, 897, 943
RsaNI	GTAC	3 cut(s)	280, 896, 942
RseI	CAYNNNNRTG	3 cut(s)	158, 164, 1256
SaqAI	TTAA	2 cut(s)	918, 1329
SatI	GCNGC	1 cut(s)	818
Sau3AI	GATC	2 cut(s)	660, 1193
Sau96I	GGNCC	2 cut(s)	262, 628
ScaI	AGTACT	2 cut(s)	281, 943
SchI	GAGTC	1 cut(s)	695
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	984
SmiMI	CAYNNNNRTG	3 cut(s)	158, 164, 1256
SmlI	CTYRAG	2 cut(s)	72, 774
SmoI	CTYRAG	2 cut(s)	72, 774
Sse9I	AATT	7 cut(s)	29, 135, 306, 905, 1029, 1218, 1330
SsiI	CCGC	2 cut(s)	215, 817
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	5 cut(s)	410, 671, 693, 1280, 1442
StyI	CCWWGG	2 cut(s)	159, 1223
TaaI	ACNGT	5 cut(s)	107, 271, 459, 553, 643
TaiI	ACGT	2 cut(s)	1057, 1152
TaqI	TCGA	1 cut(s)	1460
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	7 cut(s)	29, 135, 306, 905, 1029, 1218, 1330
TatI	WGTACW	2 cut(s)	279, 941
TauI	GCSGC	1 cut(s)	820
TfiI	GAWTC	5 cut(s)	62, 68, 529, 1006, 1465
Tru1I	TTAA	2 cut(s)	918, 1329
Tru9I	TTAA	2 cut(s)	918, 1329
TscAI	CASTG	2 cut(s)	112, 274
TseFI	GTSAC	2 cut(s)	582, 1150
Tsp45I	GTSAC	2 cut(s)	582, 1150
TspDTI	ATGAA	8 cut(s)	135, 545, 667, 940, 1274, 1357, 1365, 1478
TspGWI	ACGGA	1 cut(s)	859
TspRI	CASTG	2 cut(s)	112, 274
XapI	RAATTY	2 cut(s)	135, 1218
XceI	RCATGY	1 cut(s)	1089
XspI	CTAG	5 cut(s)	410, 671, 693, 1280, 1442
ZraI	GACGTC	1 cut(s)	1055
ZrmI	AGTACT	2 cut(s)	281, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.