Rroxscaffold_6G00430590
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
50719580 .. 50723335
3756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430590.1

Sequence Viewer

Length: 1470 bp
ATGGGCAGCAGAGAAAACATAGAAGCAGGAGAGTTAGCAAGTCCTCTGCTTGACGTCGCCGGCGGCCGGAACAGCGGTGGTGATGACGTTGGTGGAAGTAGTAGAAGTGGAACTGGAAGTGAAAATTCTTCAGCCACAAGTATGGTTGTACTCAGCACCTTGGTTGCTGTGTCTGGTTCCTATGTTTTTGGCTCTGCGGTGGGATATTCCTCACCTGCTCGGTCAGGAATCATGGATGATTTGGGCCTCTCTGTTGCTGAGTACTCGGTTTTTGGTTCAATATTGACAATTGGAGCAATGATAGGTGCAGTAGTGAGTGGGAAAATGGCAGATTACATAGGTAGAAGACGTACTATGGGATTTTCACAGATAGTCTGCATATTTGGATGGCTAGCCATAGCTCTCTCTAAGGTTGCTTGGTGGGCTGATCTTGGAAGACTATTGGTAGGATGTGGAATGGGGCTACTTTCTTATGTGGTGCCTATATACATAGCAGAAATAACACCAAAGAATCTGCGGGGAGGATTTACTACAGTTCATCAGTTGATGATATGTTGTGGTGTTTCACTAACATATCTTATTGGGGCTTTTGTGAACTGGCGAGCTTTGGCACTGATCGGAACTATTCCTTGTGTTGTACAGATTTTAGGTCTCTTCTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAAATAGGTAAAGAGAAAGAAGGCGAAGCAGCTCTTCAGCACCTTAGGGGGAAGAATGCTGATACTTCTGGAGAAGCAGCTGAGATTAGAGATTATACAAAAACTCTGAAGCTTCTCTCAGAAGCAAGCATTCTTGACTTATTTCAGTGGAGATATGCTCATTCCCTCCTTGTCGGAGTTGGCCTGATGGTACTTCAACAATTTGGAGGGGTTAATGGCATTGCCTTCTATGCAAGTACCATATTCATTTCAGCTGGGTTCTCTGATAGTATAGGGACTATAGCTATGGTTGCTGTTCAGATTCCGATGACAGCTTTGGGTGTAGTTTTAATGGACAAATCTGGAAGACGTCCACTTCTTCTGGTATCTTCAGCAGGAACATGCTTAGGTTGCCTCTTTGTGGGATTGTCATTCTTGTTGAAGGACCTTCAAGGATGGAGTCAGGTCACTCCCATAGTCGCTCTTGTTGGCGTACTGGTATATACAGGATCATTCTCACTAGGCATGGGAGGAATTCCTTGGGTTATAATGTCGGAGATATTTCCTATTAACATGAAAGGCTCGGCCGGAAGCCTGGTGACATTTGTTAGCTGGTTAGGTTCTTGGATTGTGTCATATGCATTTAATTTCCTAATGGATTGGAATTCAGCAGGGACATTCTTCATGTTTTCAAGCATATGTGGAGTAACTGTTTTATTTGTTGCAAAGCTTGTGCCGGAGACAAAGGGGCGAACACTTGAAGAAATACAAGCCTCTATGAATCCGTTTTCTGTAAAACGATAA

Protein Analysis

489

Amino Acids

51.83

Weight (kDa)

8.05

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 65 - 430 4.2e-28 Major Facilitator Superfamily
Sugar_tr PF00083 74 - 480 3.3e-91 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1214
AarI CACCTGC 1 cut(s) 223
AatII GACGTC 2 cut(s) 57, 1039
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 478
AciI CCGC 4 cut(s) 63, 75, 197, 517
AclWI GGATC 1 cut(s) 1183
AcoI YGGCCR 2 cut(s) 64, 1251
AcsI RAATTY 3 cut(s) 124, 1200, 1330
AcuI CTGAAG 4 cut(s) 114, 707, 815, 1041
AcyI GRCGYC 2 cut(s) 54, 1036
AfaI GTAC 7 cut(s) 150, 263, 352, 639, 879, 925, 1161
AfiI CCNNNNNNNGG 2 cut(s) 66, 1087
AgsI TTSAA 6 cut(s) 279, 884, 1108, 1118, 1359, 1427
AjnI CCWGG 1 cut(s) 1260
Alw26I GTCTC 3 cut(s) 656, 675, 1400
AlwI GGATC 1 cut(s) 1183
AoxI GGCC 4 cut(s) 64, 244, 868, 1251
ApeKI GCWGC 3 cut(s) 6, 716, 764
ApoI RAATTY 3 cut(s) 124, 1200, 1330
AspS9I GGNCC 2 cut(s) 244, 1111
AsuHPI GGTGA 3 cut(s) 92, 204, 1276
AsuNHI GCTAGC 1 cut(s) 391
AvaII GGWCC 1 cut(s) 1111
AxyI CCTNAGG 1 cut(s) 731
BanI GGYRCC 1 cut(s) 478
BbsI GAAGAC 3 cut(s) 352, 442, 1039
BbvI GCAGC 3 cut(s) 18, 728, 776
BccI CCATC 4 cut(s) 381, 672, 868, 1116
BciT130I CCWGG 1 cut(s) 1262
BcoDI GTCTC 3 cut(s) 656, 675, 1400
BfaI CTAG 3 cut(s) 392, 675, 1187
BfmI CTRYAG 2 cut(s) 531, 966
BfuAI ACCTGC 1 cut(s) 223
BisI GCNGC 4 cut(s) 7, 64, 717, 765
BlsI GCNGC 4 cut(s) 8, 65, 718, 766
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 1262
Bme18I GGWCC 1 cut(s) 1111
BmgT120I GGNCC 2 cut(s) 244, 1111
BmiI GGNNCC 2 cut(s) 178, 480
BmrFI CCNGG 1 cut(s) 1262
BmtI GCTAGC 1 cut(s) 395
BpiI GAAGAC 3 cut(s) 352, 442, 1039
BplI GAGNNNNNCTC 2 cut(s) 829, 861
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 1072
BsaHI GRCGYC 2 cut(s) 54, 1036
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 2 cut(s) 159, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 1362, 1392
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 1087
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 118, 602, 1167
Bse21I CCTNAGG 1 cut(s) 731
Bse3DI GCAATG 2 cut(s) 303, 906
BseBI CCWGG 1 cut(s) 1262
BseDI CCNNGG 2 cut(s) 159, 1205
BseGI GGATG 4 cut(s) 241, 392, 455, 1127
BseLI CCNNNNNNNGG 2 cut(s) 66, 1087
BseMI GCAATG 2 cut(s) 303, 906
BseMII CTCAG 4 cut(s) 166, 249, 759, 819
BseNI ACTGG 3 cut(s) 118, 602, 1167
BseX3I CGGCCG 2 cut(s) 64, 1251
BseXI GCAGC 3 cut(s) 18, 728, 776
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 327
Bsh1285I CGRYCG 2 cut(s) 67, 1254
BshFI GGCC 4 cut(s) 66, 246, 870, 1253
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 2 cut(s) 67, 1254
BsiSI CCGG 4 cut(s) 60, 67, 1254, 1403
BslFI GGGAC 2 cut(s) 976, 1354
BslI CCNNNNNNNGG 2 cut(s) 66, 1087
BsmAI GTCTC 3 cut(s) 656, 675, 1400
BsmFI GGGAC 2 cut(s) 976, 1354
BsmI GAATGC 2 cut(s) 748, 816
BsnI GGCC 4 cut(s) 66, 246, 870, 1253
Bso31I GGTCTC 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 637
Bsp143I GATC 3 cut(s) 427, 615, 1175
BspACI CCGC 4 cut(s) 63, 75, 197, 517
BspANI GGCC 4 cut(s) 66, 246, 870, 1253
BspCNI CTCAG 4 cut(s) 165, 250, 760, 818
BspLI GGNNCC 2 cut(s) 178, 480
BspMI ACCTGC 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 1 cut(s) 1183
BspQI GCTCTTC 1 cut(s) 726
BspT107I GGYRCC 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 656
BsrDI GCAATG 2 cut(s) 303, 906
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 3 cut(s) 118, 602, 1167
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 159, 1205
BssMI GATC 3 cut(s) 427, 615, 1175
BssNI GRCGYC 2 cut(s) 54, 1036
BssT1I CCWWGG 2 cut(s) 159, 1205
Bst2UI CCWGG 1 cut(s) 1262
Bst4CI ACNGT 2 cut(s) 535, 1378
Bst6I CTCTTC 2 cut(s) 659, 726
BstACI GRCGYC 2 cut(s) 54, 1036
BstAUI TGTACA 1 cut(s) 637
BstC8I GCNNGC 5 cut(s) 61, 393, 603, 684, 814
BstDEI CTNAG 7 cut(s) 152, 258, 408, 731, 768, 805, 1072
BstF5I GGATG 4 cut(s) 241, 392, 455, 1127
BstKTI GATC 3 cut(s) 430, 618, 1178
BstMAI GTCTC 3 cut(s) 656, 675, 1400
BstMBI GATC 3 cut(s) 427, 615, 1175
BstMCI CGRYCG 2 cut(s) 67, 1254
BstMWI GCNNNNNNNGC 5 cut(s) 72, 422, 917, 977, 1077
BstNI CCWGG 1 cut(s) 1262
BstNSI RCATGY 1 cut(s) 1071
BstSCI CCNGG 1 cut(s) 1260
BstSFI CTRYAG 2 cut(s) 531, 966
BstV1I GCAGC 3 cut(s) 18, 728, 776
BstV2I GAAGAC 3 cut(s) 352, 442, 1039
BstXI CCANNNNNNTGG 1 cut(s) 142
BstZI CGGCCG 2 cut(s) 64, 1251
Bsu36I CCTNAGG 1 cut(s) 731
BsuRI GGCC 4 cut(s) 66, 246, 870, 1253
BtsCI GGATG 4 cut(s) 241, 392, 455, 1127
BtsIMutI CAGTG 2 cut(s) 611, 839
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 5 cut(s) 61, 393, 603, 684, 814
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 244, 1111
Csp6I GTAC 7 cut(s) 149, 262, 351, 638, 878, 924, 1160
CviAII CATG 5 cut(s) 232, 1068, 1192, 1240, 1351
CviQI GTAC 7 cut(s) 149, 262, 351, 638, 878, 924, 1160
DdeI CTNAG 7 cut(s) 152, 258, 408, 731, 768, 805, 1072
DpnI GATC 3 cut(s) 429, 617, 1177
DpnII GATC 3 cut(s) 427, 615, 1175
EaeI YGGCCR 2 cut(s) 64, 1251
EagI CGGCCG 2 cut(s) 64, 1251
Eam1104I CTCTTC 2 cut(s) 659, 726
EarI CTCTTC 2 cut(s) 659, 726
EclXI CGGCCG 2 cut(s) 64, 1251
Eco130I CCWWGG 2 cut(s) 159, 1205
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 1111
Eco52I CGGCCG 2 cut(s) 64, 1251
Eco57I CTGAAG 4 cut(s) 114, 707, 815, 1041
Eco81I CCTNAGG 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 1111
EcoRI GAATTC 2 cut(s) 1200, 1330
EcoRII CCWGG 1 cut(s) 1260
EcoT14I CCWWGG 2 cut(s) 159, 1205
EcoT22I ATGCAT 1 cut(s) 1309
ErhI CCWWGG 2 cut(s) 159, 1205
FaeI CATG 5 cut(s) 235, 1071, 1195, 1243, 1354
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FaqI GGGAC 2 cut(s) 976, 1354
FatI CATG 5 cut(s) 231, 1067, 1191, 1239, 1350
FauI CCCGC 1 cut(s) 510
FauNDI CATATG 2 cut(s) 1303, 1364
Fnu4HI GCNGC 4 cut(s) 7, 64, 717, 765
FokI GGATG 4 cut(s) 248, 399, 462, 1134
Fsp4HI GCNGC 4 cut(s) 7, 64, 717, 765
FspBI CTAG 3 cut(s) 392, 675, 1187
GluI GCNGC 4 cut(s) 7, 64, 717, 765
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 4 cut(s) 66, 246, 870, 1253
HapII CCGG 4 cut(s) 60, 67, 1254, 1403
Hin1I GRCGYC 2 cut(s) 54, 1036
Hin1II CATG 5 cut(s) 235, 1071, 1195, 1243, 1354
HindIII AAGCTT 2 cut(s) 797, 1394
HinfI GANTC 6 cut(s) 228, 511, 668, 988, 1126, 1447
HpaII CCGG 4 cut(s) 60, 67, 1254, 1403
HphI GGTGA 3 cut(s) 92, 204, 1276
Hpy166II GTNNAC 2 cut(s) 595, 1040
Hpy188I TCNGA 8 cut(s) 620, 795, 808, 863, 952, 987, 993, 1222
Hpy188III TCNNGA 5 cut(s) 225, 665, 756, 821, 1029
Hpy8I GTNNAC 2 cut(s) 595, 1040
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 4 cut(s) 701, 922, 1102, 1124
HpyCH4III ACNGT 2 cut(s) 535, 1378
HpyCH4IV ACGT 4 cut(s) 54, 87, 349, 1036
HpyCH4V TGCA 5 cut(s) 308, 378, 920, 1307, 1391
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 422, 917, 977, 1077
HpyF3I CTNAG 7 cut(s) 152, 258, 408, 731, 768, 805, 1072
HpySE526I ACGT 4 cut(s) 54, 87, 349, 1036
Hsp92I GRCGYC 2 cut(s) 54, 1036
Hsp92II CATG 5 cut(s) 235, 1071, 1195, 1243, 1354
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 427, 615, 1175
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 3 cut(s) 18, 728, 776
MaeI CTAG 3 cut(s) 392, 675, 1187
MaeII ACGT 4 cut(s) 54, 87, 349, 1036
MaeIII GTNAC 3 cut(s) 1132, 1264, 1372
MalI GATC 3 cut(s) 429, 617, 1177
MboI GATC 3 cut(s) 427, 615, 1175
MfeI CAATTG 1 cut(s) 288
MluCI AATT 6 cut(s) 124, 288, 887, 1200, 1312, 1330
MlyI GAGTC 2 cut(s) 677, 1135
MmeI TCCRAC 2 cut(s) 841, 1200
MnlI CCTC 9 cut(s) 54, 220, 257, 515, 863, 887, 1091, 1190, 1450
Mph1103I ATGCAT 1 cut(s) 1309
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 4 cut(s) 900, 1016, 1236, 1311
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 3 cut(s) 75, 767, 941
MspI CCGG 4 cut(s) 60, 67, 1254, 1403
MspR9I CCNGG 1 cut(s) 1262
MunI CAATTG 1 cut(s) 288
Mva1269I GAATGC 2 cut(s) 748, 816
MvaI CCWGG 1 cut(s) 1262
MwoI GCNNNNNNNGC 5 cut(s) 72, 422, 917, 977, 1077
NaeI GCCGGC 1 cut(s) 61
NdeI CATATG 2 cut(s) 1303, 1364
NdeII GATC 3 cut(s) 427, 615, 1175
NgoMIV GCCGGC 1 cut(s) 59
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 5 cut(s) 235, 1071, 1195, 1243, 1354
NlaIV GGNNCC 2 cut(s) 178, 480
NmeAIII GCCGAG 1 cut(s) 1229
NmuCI GTSAC 2 cut(s) 1132, 1264
NsiI ATGCAT 1 cut(s) 1309
NspI RCATGY 1 cut(s) 1071
PaqCI CACCTGC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 726
PctI GAATGC 2 cut(s) 748, 816
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 4 cut(s) 228, 511, 988, 1447
PkrI GCNGC 4 cut(s) 8, 65, 718, 766
PleI GAGTC 2 cut(s) 676, 1134
PpsI GAGTC 2 cut(s) 676, 1134
PpuMI RGGWCCY 1 cut(s) 1111
PsiI TTATAA 1 cut(s) 1214
Psp5II RGGWCCY 1 cut(s) 1111
Psp6I CCWGG 1 cut(s) 1260
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 1 cut(s) 1260
PspN4I GGNNCC 2 cut(s) 178, 480
PspPI GGNCC 2 cut(s) 244, 1111
PspPPI RGGWCCY 1 cut(s) 1111
PvuII CAGCTG 2 cut(s) 767, 941
RsaI GTAC 7 cut(s) 150, 263, 352, 639, 879, 925, 1161
RsaNI GTAC 7 cut(s) 149, 262, 351, 638, 878, 924, 1160
RseI CAYNNNNRTG 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 4 cut(s) 900, 1016, 1236, 1311
SatI GCNGC 4 cut(s) 7, 64, 717, 765
Sau3AI GATC 3 cut(s) 427, 615, 1175
Sau96I GGNCC 2 cut(s) 244, 1111
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 2 cut(s) 677, 1135
ScrFI CCNGG 1 cut(s) 1262
SfcI CTRYAG 2 cut(s) 531, 966
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 1 cut(s) 1111
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 6 cut(s) 124, 288, 887, 1200, 1312, 1330
SsiI CCGC 4 cut(s) 63, 75, 197, 517
SspI AATATT 1 cut(s) 282
SspMI CTAG 3 cut(s) 392, 675, 1187
StyD4I CCNGG 1 cut(s) 1260
StyI CCWWGG 2 cut(s) 159, 1205
TaaI ACNGT 2 cut(s) 535, 1378
TaiI ACGT 4 cut(s) 57, 90, 352, 1039
TaqII GACCGA 1 cut(s) 210
TasI AATT 6 cut(s) 124, 288, 887, 1200, 1312, 1330
TatI WGTACW 3 cut(s) 148, 261, 637
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 4 cut(s) 228, 511, 988, 1447
Tru1I TTAA 4 cut(s) 900, 1016, 1236, 1311
Tru9I TTAA 4 cut(s) 900, 1016, 1236, 1311
TscAI CASTG 2 cut(s) 618, 839
TseFI GTSAC 2 cut(s) 1132, 1264
TseI GCWGC 3 cut(s) 6, 716, 764
Tsp45I GTSAC 2 cut(s) 1132, 1264
TspDTI ATGAA 6 cut(s) 527, 649, 922, 1256, 1339, 1460
TspGWI ACGGA 1 cut(s) 1440
TspRI CASTG 2 cut(s) 618, 839
VpaK11BI GGWCC 1 cut(s) 1111
XapI RAATTY 3 cut(s) 124, 1200, 1330
XceI RCATGY 1 cut(s) 1071
XspI CTAG 3 cut(s) 392, 675, 1187
ZraI GACGTC 2 cut(s) 55, 1037
ZrmI AGTACT 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.