Rw3G004110
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
3555439 .. 3558691
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004110.1

Sequence Viewer

Length: 1482 bp
ATGGGCAGCAGAGAAAACATAGAAGCAGGAGAGTTAGAAAGTCCTCTGCTTGACGTCGCCGGCGGCCGGAACAGCGGTGGTGATGACGTTGGTGGAAGTAGTAGAAGTGGGACTGGAAGTGGAAGTGGAAGTGAAAATTCTTCAGCCACAGGTATGGTGGTACTCAGCACCTTGGTTGCTGTGTCTGGTTCCTACGTTTTTGGCTCTGCGGTGGGATACTCCTCACCTGCTCGGTCAGGAATCATGGATGATTTGGGACTCTCGGTTGCTGAGTACTCGGTTTTCGGTTCAATATTGACAATTGGAGCAATGATAGGTGCAGTAGTGAGTGGGAAAATGGCAGATTACATAGGTAGAAGAGGTACTATGGGATTTTCACAGATAGTCTGCATATTTGGATGGCTAGCCATAGCTCTCTCTAAGGTTGCTTGGTGGGCTGATCTTGGAAGACTATTGGTAGGATGTGGAATGGGGCTACTTTCTTATGTGGTGCCTATATACATAGCAGAAATAACGCCAAAGAATCTGCGGGGAGGATTTACGACAGTTCATCAGTTGATGATATGTTGTGGTGTTTCACTAACATATCTTATTGGGGCTTTTGTGAACTGGCGAGCTTTGGCACTGATCGGAACTATTCCTTGTGTTGTACAGATTTTAGGTCTCTTCTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAAATAGGTAAAGAGAAAGAGGGGGAAGCAGCTCTTCAGCACCTTAGGGGGAAGAATGCTGATACTTCTGGAGAAGCAGCTGAGATTAGAGATTATACAAAAACTCTGAAGCTTCTCTCAGAAGCAAGCATTCTTGACTTATTTCAGTGGAGATATGCTCATTCCCTCCTTGTCGGAGTTGGCCTGATGGTACTTCAACAATTTGGAGGGGTTAATGGCATTGCCTTCTATGCAAGTACCATATTCATTTCAGCTGGGTTCTCTGATAGTATAGGGACAATAGCTATGGTTGCTGTTCAGATTCCGATGACAGCTTTGGGTGTAGTTTTAATGGACAAATCTGGAAGACGTCCACTTCTTCTGGTATCTTCAGCAGGAACATGCTTAGGTTGCCTCTTTGTGGGATTGTCATTCTTGTTGAAGGACCTTCAAGGATGGAGTCAGGTCACCCCCATATTCGCTCTTGTTGGCATACTGGTATATACAGGATCATTCTCATTAGGCATGGGAGGAATTCCTTGGGTTATAATGTCGGAGATATTTCCTATAAACATGAAAGGCTCGGCCGGAAGCCTGGTGACATTGGTTAGCTGGTTAGGTTCTTGGATTGTGTCATATGCATTTAATTTCCTAATGGATTGGAATTCAGCAGGGACATTCTTCATGTTTTCAAGCATATGTGGAGTAACTGTTTTATTTGTTGCAAAGCTTGTACCGGAGACAAAGGGGCGAACACTTGAAGAAATACAGGCCTCTATGAATCCGTTTTCTGTAAAGCGATAA

Protein Analysis

493

Amino Acids

52.08

Weight (kDa)

6.83

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 69 - 332 1.5e-20 Major Facilitator Superfamily
Sugar_tr PF00083 78 - 484 1.9e-90 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1226
AarI CACCTGC 1 cut(s) 235
AatII GACGTC 2 cut(s) 57, 1051
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 490
AciI CCGC 4 cut(s) 63, 75, 209, 529
AclWI GGATC 1 cut(s) 1195
AcoI YGGCCR 2 cut(s) 64, 1263
AcsI RAATTY 3 cut(s) 136, 1212, 1342
AcuI CTGAAG 4 cut(s) 126, 719, 827, 1053
AcyI GRCGYC 2 cut(s) 54, 1048
AfaI GTAC 7 cut(s) 162, 275, 364, 651, 891, 937, 1413
AfiI CCNNNNNNNGG 2 cut(s) 66, 1099
AgsI TTSAA 6 cut(s) 291, 896, 1120, 1130, 1371, 1439
AjnI CCWGG 1 cut(s) 1272
Alw26I GTCTC 3 cut(s) 668, 687, 1412
AlwI GGATC 1 cut(s) 1195
AoxI GGCC 4 cut(s) 64, 880, 1263, 1449
ApeKI GCWGC 3 cut(s) 6, 728, 776
ApoI RAATTY 3 cut(s) 136, 1212, 1342
AspS9I GGNCC 1 cut(s) 1123
AsuHPI GGTGA 4 cut(s) 92, 216, 1138, 1288
AsuNHI GCTAGC 1 cut(s) 403
AvaII GGWCC 1 cut(s) 1123
AxyI CCTNAGG 1 cut(s) 743
BanI GGYRCC 1 cut(s) 490
BbsI GAAGAC 2 cut(s) 454, 1051
BbvI GCAGC 3 cut(s) 18, 740, 788
BccI CCATC 4 cut(s) 393, 684, 880, 1128
BciT130I CCWGG 1 cut(s) 1274
BciVI GTATCC 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 668, 687, 1412
BfaI CTAG 2 cut(s) 404, 687
BfuAI ACCTGC 1 cut(s) 235
BfuI GTATCC 1 cut(s) 209
BisI GCNGC 4 cut(s) 7, 64, 729, 777
BlsI GCNGC 4 cut(s) 8, 65, 730, 778
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 1274
Bme18I GGWCC 1 cut(s) 1123
BmgT120I GGNCC 1 cut(s) 1123
BmiI GGNNCC 2 cut(s) 190, 492
BmrFI CCNGG 1 cut(s) 1274
BmtI GCTAGC 1 cut(s) 407
BpiI GAAGAC 2 cut(s) 454, 1051
BplI GAGNNNNNCTC 2 cut(s) 841, 873
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 1 cut(s) 1084
BsaHI GRCGYC 2 cut(s) 54, 1048
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 171, 1217
BsaWI WCCGGW 1 cut(s) 1414
BsaXI ACNNNNNCTCC 2 cut(s) 1374, 1404
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 1099
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 118, 614, 1179
Bse21I CCTNAGG 1 cut(s) 743
Bse3DI GCAATG 2 cut(s) 315, 918
BseBI CCWGG 1 cut(s) 1274
BseDI CCNNGG 2 cut(s) 171, 1217
BseGI GGATG 4 cut(s) 253, 404, 467, 1139
BseLI CCNNNNNNNGG 2 cut(s) 66, 1099
BseMI GCAATG 2 cut(s) 315, 918
BseMII CTCAG 4 cut(s) 178, 261, 771, 831
BseNI ACTGG 3 cut(s) 118, 614, 1179
BseRI GAGGAG 1 cut(s) 211
BseX3I CGGCCG 2 cut(s) 64, 1263
BseXI GCAGC 3 cut(s) 18, 740, 788
BseYI CCCAGC 1 cut(s) 953
BsgI GTGCAG 1 cut(s) 339
Bsh1285I CGRYCG 2 cut(s) 67, 1266
BshFI GGCC 4 cut(s) 66, 882, 1265, 1451
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 2 cut(s) 67, 1266
BsiSI CCGG 4 cut(s) 60, 67, 1266, 1415
BslFI GGGAC 4 cut(s) 124, 270, 988, 1366
BslI CCNNNNNNNGG 2 cut(s) 66, 1099
BsmAI GTCTC 3 cut(s) 668, 687, 1412
BsmFI GGGAC 4 cut(s) 124, 270, 988, 1366
BsmI GAATGC 2 cut(s) 760, 828
BsnI GGCC 4 cut(s) 66, 882, 1265, 1451
Bso31I GGTCTC 1 cut(s) 668
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 3 cut(s) 439, 627, 1187
BspACI CCGC 4 cut(s) 63, 75, 209, 529
BspANI GGCC 4 cut(s) 66, 882, 1265, 1451
BspCNI CTCAG 4 cut(s) 177, 262, 772, 830
BspLI GGNNCC 2 cut(s) 190, 492
BspMI ACCTGC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 407
BspPI GGATC 1 cut(s) 1195
BspQI GCTCTTC 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 668
BsrDI GCAATG 2 cut(s) 315, 918
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 649
BsrI ACTGG 3 cut(s) 118, 614, 1179
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 171, 1217
BssMI GATC 3 cut(s) 439, 627, 1187
BssNI GRCGYC 2 cut(s) 54, 1048
BssT1I CCWWGG 2 cut(s) 171, 1217
Bst2UI CCWGG 1 cut(s) 1274
Bst4CI ACNGT 2 cut(s) 547, 1390
Bst6I CTCTTC 3 cut(s) 352, 671, 738
BstACI GRCGYC 2 cut(s) 54, 1048
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 5 cut(s) 61, 405, 615, 696, 826
BstDEI CTNAG 7 cut(s) 164, 270, 420, 743, 780, 817, 1084
BstEII GGTNACC 1 cut(s) 1144
BstF5I GGATG 4 cut(s) 253, 404, 467, 1139
BstKTI GATC 3 cut(s) 442, 630, 1190
BstMAI GTCTC 3 cut(s) 668, 687, 1412
BstMBI GATC 3 cut(s) 439, 627, 1187
BstMCI CGRYCG 2 cut(s) 67, 1266
BstMWI GCNNNNNNNGC 5 cut(s) 72, 434, 929, 989, 1089
BstNI CCWGG 1 cut(s) 1274
BstNSI RCATGY 1 cut(s) 1083
BstPI GGTNACC 1 cut(s) 1144
BstSCI CCNGG 1 cut(s) 1272
BstV1I GCAGC 3 cut(s) 18, 740, 788
BstV2I GAAGAC 2 cut(s) 454, 1051
BstXI CCANNNNNNTGG 1 cut(s) 154
BstZI CGGCCG 2 cut(s) 64, 1263
Bsu36I CCTNAGG 1 cut(s) 743
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 4 cut(s) 66, 882, 1265, 1451
BtsCI GGATG 4 cut(s) 253, 404, 467, 1139
BtsIMutI CAGTG 2 cut(s) 623, 851
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 5 cut(s) 61, 405, 615, 696, 826
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 1123
Csp6I GTAC 7 cut(s) 161, 274, 363, 650, 890, 936, 1412
CviAII CATG 5 cut(s) 244, 1080, 1204, 1252, 1363
CviQI GTAC 7 cut(s) 161, 274, 363, 650, 890, 936, 1412
DdeI CTNAG 7 cut(s) 164, 270, 420, 743, 780, 817, 1084
DpnI GATC 3 cut(s) 441, 629, 1189
DpnII GATC 3 cut(s) 439, 627, 1187
EaeI YGGCCR 2 cut(s) 64, 1263
EagI CGGCCG 2 cut(s) 64, 1263
Eam1104I CTCTTC 3 cut(s) 352, 671, 738
EarI CTCTTC 3 cut(s) 352, 671, 738
EclXI CGGCCG 2 cut(s) 64, 1263
Eco130I CCWWGG 2 cut(s) 171, 1217
Eco147I AGGCCT 1 cut(s) 1451
Eco31I GGTCTC 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 1123
Eco52I CGGCCG 2 cut(s) 64, 1263
Eco57I CTGAAG 4 cut(s) 126, 719, 827, 1053
Eco81I CCTNAGG 1 cut(s) 743
Eco91I GGTNACC 1 cut(s) 1144
EcoO109I RGGNCCY 1 cut(s) 1123
EcoO65I GGTNACC 1 cut(s) 1144
EcoRI GAATTC 2 cut(s) 1212, 1342
EcoRII CCWGG 1 cut(s) 1272
EcoT14I CCWWGG 2 cut(s) 171, 1217
EcoT22I ATGCAT 1 cut(s) 1321
ErhI CCWWGG 2 cut(s) 171, 1217
FaeI CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 4 cut(s) 124, 270, 988, 1366
FatI CATG 5 cut(s) 243, 1079, 1203, 1251, 1362
FauI CCCGC 1 cut(s) 522
FauNDI CATATG 2 cut(s) 1315, 1376
Fnu4HI GCNGC 4 cut(s) 7, 64, 729, 777
FokI GGATG 4 cut(s) 260, 411, 474, 1146
Fsp4HI GCNGC 4 cut(s) 7, 64, 729, 777
FspBI CTAG 2 cut(s) 404, 687
GluI GCNGC 4 cut(s) 7, 64, 729, 777
GsaI CCCAGC 1 cut(s) 957
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 4 cut(s) 66, 882, 1265, 1451
HapII CCGG 4 cut(s) 60, 67, 1266, 1415
Hin1I GRCGYC 2 cut(s) 54, 1048
Hin1II CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
HindIII AAGCTT 2 cut(s) 809, 1406
HinfI GANTC 7 cut(s) 240, 258, 523, 680, 1000, 1138, 1459
HpaII CCGG 4 cut(s) 60, 67, 1266, 1415
HphI GGTGA 4 cut(s) 92, 216, 1138, 1288
Hpy166II GTNNAC 2 cut(s) 607, 1052
Hpy188I TCNGA 8 cut(s) 632, 807, 820, 875, 964, 999, 1005, 1234
Hpy188III TCNNGA 5 cut(s) 237, 677, 768, 833, 1041
Hpy8I GTNNAC 2 cut(s) 607, 1052
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 934, 1114, 1136
HpyCH4III ACNGT 2 cut(s) 547, 1390
HpyCH4IV ACGT 4 cut(s) 54, 87, 195, 1048
HpyCH4V TGCA 5 cut(s) 320, 390, 932, 1319, 1403
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 434, 929, 989, 1089
HpyF3I CTNAG 7 cut(s) 164, 270, 420, 743, 780, 817, 1084
HpySE526I ACGT 4 cut(s) 54, 87, 195, 1048
Hsp92I GRCGYC 2 cut(s) 54, 1048
Hsp92II CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 439, 627, 1187
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 3 cut(s) 18, 740, 788
MaeI CTAG 2 cut(s) 404, 687
MaeII ACGT 4 cut(s) 54, 87, 195, 1048
MaeIII GTNAC 3 cut(s) 1144, 1276, 1384
MalI GATC 3 cut(s) 441, 629, 1189
MboI GATC 3 cut(s) 439, 627, 1187
MfeI CAATTG 1 cut(s) 300
MluCI AATT 6 cut(s) 136, 300, 899, 1212, 1324, 1342
MlyI GAGTC 3 cut(s) 252, 689, 1147
MmeI TCCRAC 2 cut(s) 853, 1212
Mph1103I ATGCAT 1 cut(s) 1321
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 3 cut(s) 912, 1028, 1323
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 3 cut(s) 75, 779, 953
MspI CCGG 4 cut(s) 60, 67, 1266, 1415
MspR9I CCNGG 1 cut(s) 1274
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 2 cut(s) 760, 828
MvaI CCWGG 1 cut(s) 1274
MwoI GCNNNNNNNGC 5 cut(s) 72, 434, 929, 989, 1089
NaeI GCCGGC 1 cut(s) 61
NdeI CATATG 2 cut(s) 1315, 1376
NdeII GATC 3 cut(s) 439, 627, 1187
NgoMIV GCCGGC 1 cut(s) 59
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
NlaIV GGNNCC 2 cut(s) 190, 492
NmeAIII GCCGAG 1 cut(s) 1241
NmuCI GTSAC 2 cut(s) 1144, 1276
NsiI ATGCAT 1 cut(s) 1321
NspI RCATGY 1 cut(s) 1083
PaqCI CACCTGC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 1451
PciSI GCTCTTC 1 cut(s) 738
PctI GAATGC 2 cut(s) 760, 828
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 4 cut(s) 240, 523, 1000, 1459
PkrI GCNGC 4 cut(s) 8, 65, 730, 778
PleI GAGTC 3 cut(s) 252, 688, 1146
PpsI GAGTC 3 cut(s) 252, 688, 1146
PpuMI RGGWCCY 1 cut(s) 1123
PsiI TTATAA 1 cut(s) 1226
Psp5II RGGWCCY 1 cut(s) 1123
Psp6I CCWGG 1 cut(s) 1272
PspEI GGTNACC 1 cut(s) 1144
PspFI CCCAGC 1 cut(s) 953
PspGI CCWGG 1 cut(s) 1272
PspN4I GGNNCC 2 cut(s) 190, 492
PspPI GGNCC 1 cut(s) 1123
PspPPI RGGWCCY 1 cut(s) 1123
PvuII CAGCTG 2 cut(s) 779, 953
RsaI GTAC 7 cut(s) 162, 275, 364, 651, 891, 937, 1413
RsaNI GTAC 7 cut(s) 161, 274, 363, 650, 890, 936, 1412
RseI CAYNNNNRTG 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 3 cut(s) 912, 1028, 1323
SatI GCNGC 4 cut(s) 7, 64, 729, 777
Sau3AI GATC 3 cut(s) 439, 627, 1187
Sau96I GGNCC 1 cut(s) 1123
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 3 cut(s) 252, 689, 1147
ScrFI CCNGG 1 cut(s) 1274
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 1 cut(s) 1123
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 6 cut(s) 136, 300, 899, 1212, 1324, 1342
SseBI AGGCCT 1 cut(s) 1451
SsiI CCGC 4 cut(s) 63, 75, 209, 529
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 404, 687
StuI AGGCCT 1 cut(s) 1451
StyD4I CCNGG 1 cut(s) 1272
StyI CCWWGG 2 cut(s) 171, 1217
TaaI ACNGT 2 cut(s) 547, 1390
TaiI ACGT 4 cut(s) 57, 90, 198, 1051
TaqII GACCGA 1 cut(s) 222
TasI AATT 6 cut(s) 136, 300, 899, 1212, 1324, 1342
TatI WGTACW 2 cut(s) 273, 649
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 4 cut(s) 240, 523, 1000, 1459
Tru1I TTAA 3 cut(s) 912, 1028, 1323
Tru9I TTAA 3 cut(s) 912, 1028, 1323
TscAI CASTG 2 cut(s) 630, 851
TseFI GTSAC 2 cut(s) 1144, 1276
TseI GCWGC 3 cut(s) 6, 728, 776
Tsp45I GTSAC 2 cut(s) 1144, 1276
TspDTI ATGAA 6 cut(s) 539, 661, 934, 1268, 1351, 1472
TspGWI ACGGA 1 cut(s) 1452
TspRI CASTG 2 cut(s) 630, 851
VpaK11BI GGWCC 1 cut(s) 1123
XapI RAATTY 3 cut(s) 136, 1212, 1342
XceI RCATGY 1 cut(s) 1083
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 2 cut(s) 404, 687
ZraI GACGTC 2 cut(s) 55, 1049
ZrmI AGTACT 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.