Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005220

Physical Location & Seq

Genomic Coordinates Forward (+)

3763203 .. 3766935

Gene Structure 3733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG055100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGCAGCAGAGAAAGCATAGAAGCAGGAGAGTTAGCAAGTCCTCTGCTTGACGTCGCTGGCGGCCGGAACAGCGGTGGTGATGACGTTGGTGGAAGTAGTAGAAGTGGAACTGGAAGTGAAAATTCTTCAGCCACAAGTATGGTTGTACTCAGCACCTTGGTTGCTGTGTCTGGTTCCTATGTTTTTGGCTCTGCGGTGGGATATTCCTCACCTGCTCGGTCAGGAATCATGGATGATTTGGGCCTCTCTGTTGCTGAGTACTCGGTTTTCGGTTCAATATTGACAATTGGAGCAATGATAGGTGCAGTAGTGAGTGGGAAAATGGCAGATTACATAGGTAGAAGAGGTACTATGGGATTTTCACAGATAGTCTGCATATTTGGATCGCTAGCCATAGCTCTCTCTAAGGTGCCTATATACATAGCAGAAATAACACCAAAGAATCTGCGGGGAGGATTTACGACAGTTCATCAGTTGATGATATGTTGTGGTGTTTCACTAACATATCTTATTGGGGCTTTTGTGAACTGGCGAGCTTTGGCACTGATCGGAACTATTCCTTGTGTTGTACAGATTTTAGGTCTCTTCTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAAATAGGTAAAGAGAAAGAGGGGGAAGCAGCTCTTCAGCACCTTAGGGGGAAGAATGCTGATACTTCTGGAGAAGCAGCTGAGATTAGAGATTATACAAAAACTCTGAAGCTTCTCTCAGAAGCAAGCATTCTTGACTTATTTCAGTGGAGATATGCTCATTCCCTCCTTGTCGGAGTTGGCCTGATGGTACTTCAACAATTTGGAGGGGTTAATGGCATTGCCTTCTATGCAAGTACCATATTCATTTCAGCTGGGTTCTCTGATAGTATAGGGACTATAGCTATGGTTGCTGTTCAGATTCCGATGACAGCTTTGGGTGTAGTTTTAATGGACAAATCTGGAAGACGTCCACTTCTTCTGGTATCTTCAGCAGGAACATGCTTAGGTTGCCTCTTTGTGGGATTTTCATTCTTGTTGAAGGACCTTCAAGGATGGAGTCAGGTCACCCCCATATTCGCTCTTGTTGGCATACTGGTAATGCAAATAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

371

Amino Acids

38.81

Weight (kDa)

6.82

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	65 - 139	9.3e-08	Major Facilitator Superfamily
Sugar_tr	PF00083	138 - 368	6e-49	Sugar (and other) transporter
MFS_1	PF07690	139 - 365	3.6e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730
fragaria_vesca	FvH4_6g05130 FvH4_6g05130
malus_domestica	MD12G1225300.v1.1
prunus_persica	Prupe.6G331800_v2.0.a1
pyrus_communis	pycom12g21040
rosa_chinensis	RchiOBHm_Chr3g0453671
rosa_laevigata	RLG00000025500
rosa_multiflora	Rmu_sc0003556.1_g000005
rosa_roxburghii	Rroxscaffold_6G00430590
rosa_rugosa	Rorug02G0650600 Rorug02G0650700 Rorug02G0650800.1 Rorug02G0650900 Rorug02G0651000
rosa_samantha	Rh3AG053600 Rh3BG055100 Rh3CG054300 Rh3DG055400
rosa_wichuraiana	Rw3G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
AatII	GACGTC	2 cut(s)	57, 973
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	412
AciI	CCGC	4 cut(s)	63, 75, 197, 451
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	4 cut(s)	114, 641, 749, 975
AcyI	GRCGYC	2 cut(s)	54, 970
AfaI	GTAC	6 cut(s)	150, 263, 352, 573, 813, 859
AfiI	CCNNNNNNNGG	1 cut(s)	1021
AgsI	TTSAA	4 cut(s)	279, 818, 1042, 1052
AluBI	AGCT	8 cut(s)	401, 539, 653, 701, 733, 875, 905, 935
AluI	AGCT	8 cut(s)	401, 539, 653, 701, 733, 875, 905, 935
Alw26I	GTCTC	2 cut(s)	590, 609
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	3 cut(s)	64, 244, 802
ApeKI	GCWGC	3 cut(s)	6, 650, 698
ApoI	RAATTY	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	244, 1045
AsuHPI	GGTGA	3 cut(s)	92, 204, 1060
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	1045
AxyI	CCTNAGG	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	973
BbvI	GCAGC	3 cut(s)	18, 662, 710
BccI	CCATC	3 cut(s)	606, 802, 1050
BcoDI	GTCTC	2 cut(s)	590, 609
BfaI	CTAG	2 cut(s)	392, 609
BfmI	CTRYAG	1 cut(s)	900
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	4 cut(s)	7, 64, 651, 699
BlsI	GCNGC	4 cut(s)	8, 65, 652, 700
BmcAI	AGTACT	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	1045
BmgT120I	GGNCC	2 cut(s)	244, 1045
BmiI	GGNNCC	2 cut(s)	178, 414
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	973
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	1006
BsaHI	GRCGYC	2 cut(s)	54, 970
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	1021
Bse1I	ACTGG	3 cut(s)	118, 536, 1101
Bse21I	CCTNAGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	303, 840
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	241, 1061
BseLI	CCNNNNNNNGG	1 cut(s)	1021
BseMI	GCAATG	2 cut(s)	303, 840
BseMII	CTCAG	4 cut(s)	166, 249, 693, 753
BseNI	ACTGG	3 cut(s)	118, 536, 1101
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	18, 662, 710
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	66, 246, 804
BshNI	GGYRCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	1 cut(s)	1021
BsmAI	GTCTC	2 cut(s)	590, 609
BsmFI	GGGAC	1 cut(s)	910
BsmI	GAATGC	2 cut(s)	682, 750
BsnI	GGCC	3 cut(s)	66, 246, 804
Bso31I	GGTCTC	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	2 cut(s)	386, 549
BspACI	CCGC	4 cut(s)	63, 75, 197, 451
BspANI	GGCC	3 cut(s)	66, 246, 804
BspCNI	CTCAG	4 cut(s)	165, 250, 694, 752
BspLI	GGNNCC	2 cut(s)	178, 414
BspMI	ACCTGC	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	303, 840
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	118, 536, 1101
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	386, 549
BssNI	GRCGYC	2 cut(s)	54, 970
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	3 cut(s)	340, 593, 660
BstACI	GRCGYC	2 cut(s)	54, 970
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	5 cut(s)	61, 393, 537, 618, 748
BstDEI	CTNAG	7 cut(s)	152, 258, 408, 665, 702, 739, 1006
BstEII	GGTNACC	1 cut(s)	1066
BstF5I	GGATG	2 cut(s)	241, 1061
BstKTI	GATC	2 cut(s)	389, 552
BstMAI	GTCTC	2 cut(s)	590, 609
BstMBI	GATC	2 cut(s)	386, 549
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 72, 851, 911, 1011
BstNSI	RCATGY	1 cut(s)	1005
BstPI	GGTNACC	1 cut(s)	1066
BstSFI	CTRYAG	1 cut(s)	900
BstV1I	GCAGC	3 cut(s)	18, 662, 710
BstV2I	GAAGAC	1 cut(s)	973
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	66, 246, 804
BtsCI	GGATG	2 cut(s)	241, 1061
BtsIMutI	CAGTG	2 cut(s)	545, 773
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	5 cut(s)	61, 393, 537, 618, 748
Cfr13I	GGNCC	2 cut(s)	244, 1045
Csp6I	GTAC	6 cut(s)	149, 262, 351, 572, 812, 858
CviAII	CATG	2 cut(s)	232, 1002
CviQI	GTAC	6 cut(s)	149, 262, 351, 572, 812, 858
DdeI	CTNAG	7 cut(s)	152, 258, 408, 665, 702, 739, 1006
DpnI	GATC	2 cut(s)	388, 551
DpnII	GATC	2 cut(s)	386, 549
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	340, 593, 660
EarI	CTCTTC	3 cut(s)	340, 593, 660
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	1045
Eco52I	CGGCCG	1 cut(s)	64
Eco57I	CTGAAG	4 cut(s)	114, 641, 749, 975
Eco81I	CCTNAGG	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	1066
EcoO109I	RGGNCCY	1 cut(s)	1045
EcoO65I	GGTNACC	1 cut(s)	1066
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	235, 1005
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	2 cut(s)	231, 1001
FauI	CCCGC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	7, 64, 651, 699
FokI	GGATG	2 cut(s)	248, 1068
Fsp4HI	GCNGC	4 cut(s)	7, 64, 651, 699
FspBI	CTAG	2 cut(s)	392, 609
GluI	GCNGC	4 cut(s)	7, 64, 651, 699
GsaI	CCCAGC	1 cut(s)	879
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	3 cut(s)	66, 246, 804
HapII	CCGG	1 cut(s)	67
Hin1I	GRCGYC	2 cut(s)	54, 970
Hin1II	CATG	2 cut(s)	235, 1005
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	5 cut(s)	228, 445, 602, 922, 1060
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	3 cut(s)	92, 204, 1060
Hpy166II	GTNNAC	2 cut(s)	529, 974
Hpy188I	TCNGA	7 cut(s)	554, 729, 742, 797, 886, 921, 927
Hpy188III	TCNNGA	5 cut(s)	225, 599, 690, 755, 963
Hpy8I	GTNNAC	2 cut(s)	529, 974
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	856, 1036, 1058
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	3 cut(s)	54, 87, 970
HpyCH4V	TGCA	4 cut(s)	308, 378, 854, 1105
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 72, 851, 911, 1011
HpyF3I	CTNAG	7 cut(s)	152, 258, 408, 665, 702, 739, 1006
HpySE526I	ACGT	3 cut(s)	54, 87, 970
Hsp92I	GRCGYC	2 cut(s)	54, 970
Hsp92II	CATG	2 cut(s)	235, 1005
Kzo9I	GATC	2 cut(s)	386, 549
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	3 cut(s)	18, 662, 710
MaeI	CTAG	2 cut(s)	392, 609
MaeII	ACGT	3 cut(s)	54, 87, 970
MaeIII	GTNAC	1 cut(s)	1066
MalI	GATC	2 cut(s)	388, 551
MboI	GATC	2 cut(s)	386, 549
MboII	GAAGA	9 cut(s)	120, 357, 580, 583, 647, 685, 971, 978, 981
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	3 cut(s)	124, 288, 821
MlyI	GAGTC	2 cut(s)	611, 1069
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	9 cut(s)	54, 220, 257, 341, 449, 634, 797, 821, 1025
MseI	TTAA	2 cut(s)	834, 950
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	3 cut(s)	75, 701, 875
MspI	CCGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	2 cut(s)	682, 750
MwoI	GCNNNNNNNGC	5 cut(s)	15, 72, 851, 911, 1011
NdeII	GATC	2 cut(s)	386, 549
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	235, 1005
NlaIV	GGNNCC	2 cut(s)	178, 414
NmuCI	GTSAC	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	1005
PaqCI	CACCTGC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	2 cut(s)	682, 750
PfeI	GAWTC	3 cut(s)	228, 445, 922
PkrI	GCNGC	4 cut(s)	8, 65, 652, 700
PleI	GAGTC	2 cut(s)	610, 1068
PpsI	GAGTC	2 cut(s)	610, 1068
PpuMI	RGGWCCY	1 cut(s)	1045
Psp5II	RGGWCCY	1 cut(s)	1045
PspEI	GGTNACC	1 cut(s)	1066
PspFI	CCCAGC	1 cut(s)	875
PspN4I	GGNNCC	2 cut(s)	178, 414
PspPI	GGNCC	2 cut(s)	244, 1045
PspPPI	RGGWCCY	1 cut(s)	1045
PvuII	CAGCTG	2 cut(s)	701, 875
RsaI	GTAC	6 cut(s)	150, 263, 352, 573, 813, 859
RsaNI	GTAC	6 cut(s)	149, 262, 351, 572, 812, 858
RseI	CAYNNNNRTG	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	2 cut(s)	834, 950
SatI	GCNGC	4 cut(s)	7, 64, 651, 699
Sau3AI	GATC	2 cut(s)	386, 549
Sau96I	GGNCC	2 cut(s)	244, 1045
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	2 cut(s)	611, 1069
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	1045
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	124, 288, 821
SsiI	CCGC	4 cut(s)	63, 75, 197, 451
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	392, 609
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	3 cut(s)	57, 90, 973
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	124, 288, 821
TatI	WGTACW	3 cut(s)	148, 261, 571
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	228, 445, 922
Tru1I	TTAA	2 cut(s)	834, 950
Tru9I	TTAA	2 cut(s)	834, 950
TscAI	CASTG	2 cut(s)	552, 773
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	3 cut(s)	6, 650, 698
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	4 cut(s)	461, 583, 856, 1020
TspRI	CASTG	2 cut(s)	552, 773
VpaK11BI	GGWCC	1 cut(s)	1045
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	1005
XspI	CTAG	2 cut(s)	392, 609
ZraI	GACGTC	2 cut(s)	55, 971
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.