Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005220

Physical Location & Seq

Genomic Coordinates Forward (+)

3763203 .. 3767043

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG053600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGGCAGCAGAGAAAGCATAGAAGCAGGAGAGTTAGCAAGTCCTCTGCTTGACGTCGCTGGCGGCCGGAACAGCGGTGGTGATGACGTTGGTGGAAGTAGTAGAAGTGGAACTGGAAGTGAAAATTCTTCAGCCACAAGTATGGTTGTACTCAGCACCTTGGTTGCTGTGTCTGGTTCCTATGTTTTTGGCTCTGCGGTGGGATATTCCTCACCTGCTCGGTCAGGAATCATGGATGATTTGGGCCTCTCTGTTGCTGAGTACTCGGTTTTCGGTTCAATATTGACAATTGGAGCAATGATAGGTGCAGTAGTGAGTGGGAAAATGGCAGATTACATAGGTAGAAGAGGTACTATGGGATTTTCACAGATAGTCTGCATATTTGGATCGCTAGCCATAGCTCTCTCTAAGGTGCCTATATACATAGCAGAAATAACACCAAAGAATCTGCGGGGAGGATTTACGACAGTTCATCAGTTGATGATATGTTGTGGTGTTTCACTAACATATCTTATTGGGGCTTTTGTGAACTGGCGAGCTTTGGCACTGATCGGAACTATTCCTTGTGTTGTACAGATTTTAGGTCTCTTCTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAAATAGGTAAAGAGAAAGAGGGGGAAGCAGCTCTTCAGCACCTTAGGGGGAAGAATGCTGATACTTCTGGAGAAGCAGCTGAGATTAGAGATTATACAAAAACTCTGAAGCTTCTCTCAGAAGCAAGCATTCTTGACTTATTTCAGTGGAGATATGCTCATTCCCTCCTTGTCGGAGTTGGCCTGATGGTACTTCAACAATTTGGAGGGGTTAATGGCATTGCCTTCTATGCAAGTACCATATTCATTTCAGCTGGGTTCTCTGATAGTATAGGGACTATAGCTATGGTTGCTGTTCAGATTCCGATGACAGCTTTGGGTGTAGTTTTAATGGACAAATCTGGAAGACGTCCACTTCTTCTGGTATCTTCAGCAGGAACATGCTTAGGTTGCCTCTTTGTGGGATTTTCATTCTTGTTGAAGGTTTCCTCCTGTTCAAATATAGTCCCGTTTCAATTTCTTATTGTAATTTTTAATTATTTCTTGATAGTACGAAGTATACCATGTTTAGGACCTTCAAGGATGGAGTCAGGTCACCCCCATATTCGCTCTTGTTGGCATACTGGTATATACAGGATCATTCTCATTAGGCATGGGAGGAATTCCTTGGGTTATAATGTCGGAGATATTTCCTATAAACATGAAAGGCTCAGCCGGAAGCCTGGTGACATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

432

Amino Acids

45.88

Weight (kDa)

8.91

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	65 - 139	1.1e-07	Major Facilitator Superfamily
Sugar_tr	PF00083	138 - 371	2.6e-48	Sugar (and other) transporter
MFS_1	PF07690	140 - 352	8.4e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730
fragaria_vesca	FvH4_6g05130 FvH4_6g05130
malus_domestica	MD12G1225300.v1.1
prunus_persica	Prupe.6G331800_v2.0.a1
pyrus_communis	pycom12g21040
rosa_chinensis	RchiOBHm_Chr3g0453671
rosa_laevigata	RLG00000025500
rosa_multiflora	Rmu_sc0003556.1_g000005
rosa_roxburghii	Rroxscaffold_6G00430590
rosa_rugosa	Rorug02G0650600 Rorug02G0650700 Rorug02G0650800.1 Rorug02G0650900 Rorug02G0651000
rosa_samantha	Rh3AG053600 Rh3BG055100 Rh3CG054300 Rh3DG055400
rosa_wichuraiana	Rw3G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1236
AarI	CACCTGC	1 cut(s)	223
AatII	GACGTC	2 cut(s)	57, 973
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	1120
AciI	CCGC	4 cut(s)	63, 75, 197, 451
AclWI	GGATC	2 cut(s)	394, 1205
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	124, 1222
AcuI	CTGAAG	4 cut(s)	114, 641, 749, 975
AcyI	GRCGYC	2 cut(s)	54, 970
AfaI	GTAC	7 cut(s)	150, 263, 352, 573, 813, 859, 1113
AfiI	CCNNNNNNNGG	2 cut(s)	1021, 1130
AgsI	TTSAA	6 cut(s)	279, 818, 1042, 1059, 1076, 1140
AjnI	CCWGG	1 cut(s)	1282
AluBI	AGCT	8 cut(s)	401, 539, 653, 701, 733, 875, 905, 935
AluI	AGCT	8 cut(s)	401, 539, 653, 701, 733, 875, 905, 935
Alw26I	GTCTC	2 cut(s)	590, 609
AlwI	GGATC	2 cut(s)	394, 1205
AoxI	GGCC	3 cut(s)	64, 244, 802
ApeKI	GCWGC	3 cut(s)	6, 650, 698
ApoI	RAATTY	2 cut(s)	124, 1222
AspS9I	GGNCC	2 cut(s)	244, 1133
AsuHPI	GGTGA	4 cut(s)	92, 204, 1148, 1298
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	1133
AxyI	CCTNAGG	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	973
BbvI	GCAGC	3 cut(s)	18, 662, 710
BccI	CCATC	3 cut(s)	606, 802, 1138
BciT130I	CCWGG	1 cut(s)	1284
BcoDI	GTCTC	2 cut(s)	590, 609
BfaI	CTAG	2 cut(s)	392, 609
BfmI	CTRYAG	1 cut(s)	900
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	4 cut(s)	7, 64, 651, 699
BlpI	GCTNAGC	1 cut(s)	1271
BlsI	GCNGC	4 cut(s)	8, 65, 652, 700
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	1284
Bme18I	GGWCC	1 cut(s)	1133
BmgT120I	GGNCC	2 cut(s)	244, 1133
BmiI	GGNNCC	2 cut(s)	178, 414
BmrFI	CCNGG	1 cut(s)	1284
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	973
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	1006
Bpu1102I	GCTNAGC	1 cut(s)	1271
BsaHI	GRCGYC	2 cut(s)	54, 970
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	159, 1227
Bsc4I	CCNNNNNNNGG	2 cut(s)	1021, 1130
Bse1I	ACTGG	3 cut(s)	118, 536, 1189
Bse21I	CCTNAGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	303, 840
BseBI	CCWGG	1 cut(s)	1284
BseDI	CCNNGG	2 cut(s)	159, 1227
BseGI	GGATG	2 cut(s)	241, 1149
BseLI	CCNNNNNNNGG	2 cut(s)	1021, 1130
BseMI	GCAATG	2 cut(s)	303, 840
BseMII	CTCAG	5 cut(s)	166, 249, 693, 753, 1285
BseNI	ACTGG	3 cut(s)	118, 536, 1189
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	18, 662, 710
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	66, 246, 804
BshNI	GGYRCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	67, 1276
BslFI	GGGAC	2 cut(s)	910, 1052
BslI	CCNNNNNNNGG	2 cut(s)	1021, 1130
BsmAI	GTCTC	2 cut(s)	590, 609
BsmFI	GGGAC	2 cut(s)	910, 1052
BsmI	GAATGC	2 cut(s)	682, 750
BsnI	GGCC	3 cut(s)	66, 246, 804
Bso31I	GGTCTC	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	386, 549, 1197
Bsp1720I	GCTNAGC	1 cut(s)	1271
BspACI	CCGC	4 cut(s)	63, 75, 197, 451
BspANI	GGCC	3 cut(s)	66, 246, 804
BspCNI	CTCAG	5 cut(s)	165, 250, 694, 752, 1284
BspLI	GGNNCC	2 cut(s)	178, 414
BspMI	ACCTGC	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	394, 1205
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	303, 840
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	118, 536, 1189
BssECI	CCNNGG	2 cut(s)	159, 1227
BssMI	GATC	3 cut(s)	386, 549, 1197
BssNAI	GTATAC	1 cut(s)	1121
BssNI	GRCGYC	2 cut(s)	54, 970
BssT1I	CCWWGG	2 cut(s)	159, 1227
Bst1107I	GTATAC	1 cut(s)	1121
Bst2UI	CCWGG	1 cut(s)	1284
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	3 cut(s)	340, 593, 660
BstACI	GRCGYC	2 cut(s)	54, 970
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	5 cut(s)	61, 393, 537, 618, 748
BstDEI	CTNAG	8 cut(s)	152, 258, 408, 665, 702, 739, 1006, 1271
BstEII	GGTNACC	1 cut(s)	1154
BstF5I	GGATG	2 cut(s)	241, 1149
BstKTI	GATC	3 cut(s)	389, 552, 1200
BstMAI	GTCTC	2 cut(s)	590, 609
BstMBI	GATC	3 cut(s)	386, 549, 1197
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 72, 851, 911, 1011
BstNI	CCWGG	1 cut(s)	1284
BstNSI	RCATGY	1 cut(s)	1005
BstPI	GGTNACC	1 cut(s)	1154
BstSCI	CCNGG	1 cut(s)	1282
BstSFI	CTRYAG	1 cut(s)	900
BstV1I	GCAGC	3 cut(s)	18, 662, 710
BstV2I	GAAGAC	1 cut(s)	973
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstZ17I	GTATAC	1 cut(s)	1121
BstZI	CGGCCG	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	66, 246, 804
BtsCI	GGATG	2 cut(s)	241, 1149
BtsIMutI	CAGTG	2 cut(s)	545, 773
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	5 cut(s)	61, 393, 537, 618, 748
Cfr13I	GGNCC	2 cut(s)	244, 1133
Csp6I	GTAC	7 cut(s)	149, 262, 351, 572, 812, 858, 1112
CviAII	CATG	5 cut(s)	232, 1002, 1125, 1214, 1262
CviQI	GTAC	7 cut(s)	149, 262, 351, 572, 812, 858, 1112
DdeI	CTNAG	8 cut(s)	152, 258, 408, 665, 702, 739, 1006, 1271
DpnI	GATC	3 cut(s)	388, 551, 1199
DpnII	GATC	3 cut(s)	386, 549, 1197
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	340, 593, 660
EarI	CTCTTC	3 cut(s)	340, 593, 660
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	159, 1227
Eco31I	GGTCTC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	1133
Eco52I	CGGCCG	1 cut(s)	64
Eco57I	CTGAAG	4 cut(s)	114, 641, 749, 975
Eco81I	CCTNAGG	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	1154
EcoO109I	RGGNCCY	1 cut(s)	1133
EcoO65I	GGTNACC	1 cut(s)	1154
EcoRI	GAATTC	1 cut(s)	1222
EcoRII	CCWGG	1 cut(s)	1282
EcoT14I	CCWWGG	2 cut(s)	159, 1227
ErhI	CCWWGG	2 cut(s)	159, 1227
FaeI	CATG	5 cut(s)	235, 1005, 1128, 1217, 1265
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	2 cut(s)	910, 1052
FatI	CATG	5 cut(s)	231, 1001, 1124, 1213, 1261
FauI	CCCGC	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	1120
Fnu4HI	GCNGC	4 cut(s)	7, 64, 651, 699
FokI	GGATG	2 cut(s)	248, 1156
Fsp4HI	GCNGC	4 cut(s)	7, 64, 651, 699
FspBI	CTAG	2 cut(s)	392, 609
GluI	GCNGC	4 cut(s)	7, 64, 651, 699
GsaI	CCCAGC	1 cut(s)	879
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	3 cut(s)	66, 246, 804
HapII	CCGG	2 cut(s)	67, 1276
Hin1I	GRCGYC	2 cut(s)	54, 970
Hin1II	CATG	5 cut(s)	235, 1005, 1128, 1217, 1265
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	5 cut(s)	228, 445, 602, 922, 1148
HpaII	CCGG	2 cut(s)	67, 1276
HphI	GGTGA	4 cut(s)	92, 204, 1148, 1298
Hpy166II	GTNNAC	3 cut(s)	529, 974, 1121
Hpy188I	TCNGA	8 cut(s)	554, 729, 742, 797, 886, 921, 927, 1244
Hpy188III	TCNNGA	6 cut(s)	225, 599, 690, 755, 963, 1105
Hpy8I	GTNNAC	3 cut(s)	529, 974, 1121
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	856, 1036, 1146
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	3 cut(s)	54, 87, 970
HpyCH4V	TGCA	3 cut(s)	308, 378, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 72, 851, 911, 1011
HpyF3I	CTNAG	8 cut(s)	152, 258, 408, 665, 702, 739, 1006, 1271
HpySE526I	ACGT	3 cut(s)	54, 87, 970
Hsp92I	GRCGYC	2 cut(s)	54, 970
Hsp92II	CATG	5 cut(s)	235, 1005, 1128, 1217, 1265
Kzo9I	GATC	3 cut(s)	386, 549, 1197
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	3 cut(s)	18, 662, 710
MaeI	CTAG	2 cut(s)	392, 609
MaeII	ACGT	3 cut(s)	54, 87, 970
MaeIII	GTNAC	2 cut(s)	1154, 1286
MalI	GATC	3 cut(s)	388, 551, 1199
MboI	GATC	3 cut(s)	386, 549, 1197
MboII	GAAGA	9 cut(s)	120, 357, 580, 583, 647, 685, 971, 978, 981
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	7 cut(s)	124, 288, 821, 1076, 1089, 1096, 1222
MlyI	GAGTC	2 cut(s)	611, 1157
MmeI	TCCRAC	2 cut(s)	775, 1222
MseI	TTAA	3 cut(s)	834, 950, 1095
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	3 cut(s)	75, 701, 875
MspI	CCGG	2 cut(s)	67, 1276
MspR9I	CCNGG	1 cut(s)	1284
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	2 cut(s)	682, 750
MvaI	CCWGG	1 cut(s)	1284
MwoI	GCNNNNNNNGC	5 cut(s)	15, 72, 851, 911, 1011
NdeII	GATC	3 cut(s)	386, 549, 1197
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	5 cut(s)	235, 1005, 1128, 1217, 1265
NlaIV	GGNNCC	2 cut(s)	178, 414
NmuCI	GTSAC	2 cut(s)	1154, 1286
NspI	RCATGY	1 cut(s)	1005
PaqCI	CACCTGC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	2 cut(s)	682, 750
PfeI	GAWTC	3 cut(s)	228, 445, 922
PkrI	GCNGC	4 cut(s)	8, 65, 652, 700
PleI	GAGTC	2 cut(s)	610, 1156
PpsI	GAGTC	2 cut(s)	610, 1156
PpuMI	RGGWCCY	1 cut(s)	1133
PsiI	TTATAA	1 cut(s)	1236
Psp5II	RGGWCCY	1 cut(s)	1133
Psp6I	CCWGG	1 cut(s)	1282
PspEI	GGTNACC	1 cut(s)	1154
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	1282
PspN4I	GGNNCC	2 cut(s)	178, 414
PspPI	GGNCC	2 cut(s)	244, 1133
PspPPI	RGGWCCY	1 cut(s)	1133
PvuII	CAGCTG	2 cut(s)	701, 875
RsaI	GTAC	7 cut(s)	150, 263, 352, 573, 813, 859, 1113
RsaNI	GTAC	7 cut(s)	149, 262, 351, 572, 812, 858, 1112
RseI	CAYNNNNRTG	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	834, 950, 1095
SatI	GCNGC	4 cut(s)	7, 64, 651, 699
Sau3AI	GATC	3 cut(s)	386, 549, 1197
Sau96I	GGNCC	2 cut(s)	244, 1133
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	2 cut(s)	611, 1157
ScrFI	CCNGG	1 cut(s)	1284
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	1133
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	7 cut(s)	124, 288, 821, 1076, 1089, 1096, 1222
SsiI	CCGC	4 cut(s)	63, 75, 197, 451
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	392, 609
StyD4I	CCNGG	1 cut(s)	1282
StyI	CCWWGG	2 cut(s)	159, 1227
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	3 cut(s)	57, 90, 973
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	7 cut(s)	124, 288, 821, 1076, 1089, 1096, 1222
TatI	WGTACW	3 cut(s)	148, 261, 571
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	228, 445, 922
Tru1I	TTAA	3 cut(s)	834, 950, 1095
Tru9I	TTAA	3 cut(s)	834, 950, 1095
TscAI	CASTG	2 cut(s)	552, 773
TseFI	GTSAC	2 cut(s)	1154, 1286
TseI	GCWGC	3 cut(s)	6, 650, 698
Tsp45I	GTSAC	2 cut(s)	1154, 1286
TspDTI	ATGAA	5 cut(s)	461, 583, 856, 1020, 1278
TspRI	CASTG	2 cut(s)	552, 773
VpaK11BI	GGWCC	1 cut(s)	1133
XapI	RAATTY	2 cut(s)	124, 1222
XceI	RCATGY	1 cut(s)	1005
XmiI	GTMKAC	1 cut(s)	1120
XspI	CTAG	2 cut(s)	392, 609
ZraI	GACGTC	2 cut(s)	55, 971
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.