Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005220

Physical Location & Seq

Genomic Coordinates Reverse (-)

22311380 .. 22314869

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21040.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGAGCAGAGAAAACATAGAAGAAGCAGAACTCTCAAATCCTTTGCTCGTCAAAAATAGTACATCGAAGCTCCATAGTGGCGGCATCGGTGGCAGTGGCGGTAGCGGCAGCGGTGGTAGTTGCAGTGGCAGCAATAGCAACGGTGGTGCTGGTTATGAAGAAGGAGGTGAAAGTAGCTCATCAGCTACGATTATGGTTATGGTCAGCACTCTGGTTGCTGTCTCTGGCTCCTATGTTTTTGGGTCTGCGGTGGGATATTCCTCACCAGCTCGGTCTGGGGTCATGAATGATCTGGGCCTCACTGTAGCTCAGTACTCGGTTTTTGGTTCAATATTGACAATCGGAGCAATGATAGGAGCAGTAGTGAGTGGAAGAATAGCAGATTATATAGGCAGAAGAGGTGCAATGGCATTTGCCGAGATATTCTGCATTTTGGGATGGCTAGCAATAGCTTTCTCTAAGGTTGCTTGGTGGGCGGAACTTGGAAGGCTGTTGGTTGGATGTGGAATAGGGCTTCTTTCTTATGTGGTGCCTATATACATAGCAGAAATAACACCGAAGAATCTGCGGGGAGGATTTACAACTGTTCATCAGTTGATGATATGCTGTGGCTTGTCGCTGACATATCTTATCGGGGCTTTTTTGAACTGGCGAGCTTTGGCTCTCCTCGGGACTATTCCGTGTGTTATACAGATTTTAGGTCTTTTCTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAGATCGGTAAATGGAAAGAGTGTGAAGCCGCTCTTCAGCGCCTTAGGGGGGAGAATTCTGGTACTTCTCAAGAAGTAGCTGAGATTAGAGATTATACAGAAACTCTGAAACGGCTTTCAGAAGCGAGAATTCTTGACTTATTTCAAAGGAGATACACTTATTCCCTCGTTGTAGGAGTTGGGCTTATGGTACTACAACAATTTGGAGGGGTCAATGGCATTGCCTTCTATGCAAGTACTATATTCATTTCAGCTGGATTTTCAGATAGTGTTGGGACTATAGCTATGGTTGCAGTTCAGGTTCCAATGACAGTATTGGGTGTAATTTTGATGGACAAAGCTGGACGGCGTCCTCTTCTTCTGGTATCTTCAGCAGGAACATGCTTAGCTTGCCTCCTTGTCGGGCTGTCATTCTCGTTGCAGAACCTTCAACAGTGGAAGCAGATTACTCCCATTTTGGCACTTATCGGCGTTTTGGCATTTACTGGATCGTTCTCGTTGGGCATAGGAGGCATTCCTTGGGTTATAATGTCAGAGATATTTCCCATAAACATGAAGGGGTCAGCCGGCAGCCTAATAACATTGGTTAACTGGTTAGGTTCTTGGATAGTCTCATACGCTTTTAATTTCCTAATGGATTGGAGCTCCGCAGGAACTTTTTTCTTGTTTTCAAGCGTATCTGCTGTAACCGTTCTGTTTGTTGCAAAGCTGGTACCGGAGACAAAGGGCCGAACGCTGGAAGAAATACAAACATCGTTGAACCGATTTTCAGAAAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

507

Amino Acids

53.76

Weight (kDa)

8.51

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730 AT1G54730
fragaria_vesca	FvH4_6g05130 FvH4_6g05130
malus_domestica	MD12G1225300.v1.1
prunus_persica	Prupe.6G331800_v2.0.a1
pyrus_communis	pycom12g21040
rosa_chinensis	RchiOBHm_Chr3g0453671
rosa_laevigata	RLG00000025500
rosa_multiflora	Rmu_sc0003556.1_g000005
rosa_roxburghii	Rroxscaffold_6G00430590
rosa_rugosa	Rorug02G0650600 Rorug02G0650700 Rorug02G0650800.1 Rorug02G0650900 Rorug02G0651000
rosa_samantha	Rh3AG053600 Rh3BG055100 Rh3CG054300 Rh3DG055400
rosa_wichuraiana	Rw3G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1265
Acc65I	GGTACC	1 cut(s)	1450
AccB1I	GGYRCC	2 cut(s)	529, 1450
AccBSI	CCGCTC	1 cut(s)	770
AciI	CCGC	9 cut(s)	81, 99, 105, 111, 248, 476, 568, 768, 1386
AclWI	GGATC	1 cut(s)	1234
AcsI	RAATTY	2 cut(s)	793, 867
AcuI	CTGAAG	2 cut(s)	758, 1092
AcyI	GRCGYC	1 cut(s)	1087
AfaI	GTAC	6 cut(s)	61, 314, 802, 930, 976, 1452
AfiI	CCNNNNNNNGG	2 cut(s)	787, 1474
AgsI	TTSAA	6 cut(s)	330, 646, 884, 1169, 1410, 1498
Alw21I	GWGCWC	1 cut(s)	1385
Alw26I	GTCTC	4 cut(s)	226, 726, 1354, 1451
AlwI	GGATC	1 cut(s)	1234
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	2 cut(s)	295, 1465
ApeKI	GCWGC	3 cut(s)	108, 129, 1308
ApoI	RAATTY	2 cut(s)	793, 867
Asp718I	GGTACC	1 cut(s)	1450
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	2 cut(s)	295, 1465
AsuHPI	GGTGA	2 cut(s)	179, 255
AsuNHI	GCTAGC	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	782
BanI	GGYRCC	2 cut(s)	529, 1450
BanII	GRGCYC	1 cut(s)	1385
Bbv12I	GWGCWC	1 cut(s)	1385
BbvI	GCAGC	3 cut(s)	120, 141, 1320
BccI	CCATC	3 cut(s)	432, 723, 1063
BceAI	ACGGC	2 cut(s)	866, 1100
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BcoDI	GTCTC	4 cut(s)	226, 726, 1354, 1451
BfaI	CTAG	2 cut(s)	443, 726
BfmI	CTRYAG	2 cut(s)	303, 1017
BfoI	RGCGCY	1 cut(s)	781
BisI	GCNGC	6 cut(s)	82, 106, 109, 130, 768, 1309
BlpI	GCTNAGC	1 cut(s)	1123
BlsI	GCNGC	6 cut(s)	83, 107, 110, 131, 769, 1310
BmcAI	AGTACT	2 cut(s)	314, 976
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	295, 1465
BmiI	GGNNCC	4 cut(s)	229, 531, 1041, 1452
BmsI	GCATC	1 cut(s)	93
BmtI	GCTAGC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	1123
BpuEI	CTTGAG	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	1087
BsaJI	CCNNGG	2 cut(s)	667, 1256
BsaWI	WCCGGW	1 cut(s)	1453
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	787, 1474
Bse118I	RCCGGY	1 cut(s)	1304
Bse1I	ACTGG	3 cut(s)	653, 1228, 1334
Bse21I	CCTNAGG	1 cut(s)	782
Bse3DI	GCAATG	3 cut(s)	354, 411, 957
BseDI	CCNNGG	2 cut(s)	667, 1256
BseGI	GGATG	2 cut(s)	443, 506
BseLI	CCNNNNNNNGG	2 cut(s)	787, 1474
BseMI	GCAATG	3 cut(s)	354, 411, 957
BseMII	CTCAG	2 cut(s)	323, 810
BseNI	ACTGG	3 cut(s)	653, 1228, 1334
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	120, 141, 1320
BshFI	GGCC	2 cut(s)	297, 1467
BshNI	GGYRCC	2 cut(s)	529, 1450
BsiHKAI	GWGCWC	1 cut(s)	1385
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	2 cut(s)	1305, 1454
BslFI	GGGAC	2 cut(s)	685, 1027
BslI	CCNNNNNNNGG	2 cut(s)	787, 1474
BsmAI	GTCTC	4 cut(s)	226, 726, 1354, 1451
BsmFI	GGGAC	2 cut(s)	685, 1027
BsmI	GAATGC	1 cut(s)	1251
BsnI	GGCC	2 cut(s)	297, 1467
BsoBI	CYCGRG	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	1385
Bsp143I	GATC	3 cut(s)	289, 741, 1226
Bsp1720I	GCTNAGC	1 cut(s)	1123
BspACI	CCGC	9 cut(s)	81, 99, 105, 111, 248, 476, 568, 768, 1386
BspANI	GGCC	2 cut(s)	297, 1467
BspCNI	CTCAG	2 cut(s)	322, 811
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	229, 531, 1041, 1452
BspOI	GCTAGC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	1234
BspQI	GCTCTTC	1 cut(s)	777
BspT107I	GGYRCC	2 cut(s)	529, 1450
BsrBI	CCGCTC	1 cut(s)	770
BsrDI	GCAATG	3 cut(s)	354, 411, 957
BsrFI	RCCGGY	1 cut(s)	1304
BsrI	ACTGG	3 cut(s)	653, 1228, 1334
BssAI	RCCGGY	1 cut(s)	1304
BssECI	CCNNGG	2 cut(s)	667, 1256
BssMI	GATC	3 cut(s)	289, 741, 1226
BssNI	GRCGYC	1 cut(s)	1087
BssT1I	CCWWGG	1 cut(s)	1256
Bst4CI	ACNGT	6 cut(s)	143, 304, 586, 1051, 1173, 1429
Bst6I	CTCTTC	3 cut(s)	391, 777, 1098
BstACI	GRCGYC	1 cut(s)	1087
BstC8I	GCNNGC	5 cut(s)	444, 654, 735, 1129, 1306
BstDEI	CTNAG	5 cut(s)	309, 459, 782, 819, 1123
BstF5I	GGATG	2 cut(s)	443, 506
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	3 cut(s)	292, 744, 1229
BstMAI	GTCTC	4 cut(s)	226, 726, 1354, 1451
BstMBI	GATC	3 cut(s)	289, 741, 1226
BstMWI	GCNNNNNNNGC	9 cut(s)	90, 105, 129, 135, 473, 968, 1028, 1128, 1248
BstNSI	RCATGY	1 cut(s)	1122
BstSFI	CTRYAG	2 cut(s)	303, 1017
BstV1I	GCAGC	3 cut(s)	120, 141, 1320
Bsu36I	CCTNAGG	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	297, 1467
BtsCI	GGATG	2 cut(s)	443, 506
BtsI	GCAGTG	2 cut(s)	100, 130
BtsIMutI	CAGTG	4 cut(s)	100, 130, 300, 1178
Cac8I	GCNNGC	5 cut(s)	444, 654, 735, 1129, 1306
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	780
Cfr10I	RCCGGY	1 cut(s)	1304
Cfr13I	GGNCC	2 cut(s)	295, 1465
CseI	GACGC	1 cut(s)	1076
Csp6I	GTAC	6 cut(s)	60, 313, 801, 929, 975, 1451
CviAII	CATG	3 cut(s)	283, 1119, 1291
CviQI	GTAC	6 cut(s)	60, 313, 801, 929, 975, 1451
DdeI	CTNAG	5 cut(s)	309, 459, 782, 819, 1123
DpnI	GATC	3 cut(s)	291, 743, 1228
DpnII	GATC	3 cut(s)	289, 741, 1226
Eam1104I	CTCTTC	3 cut(s)	391, 777, 1098
EarI	CTCTTC	3 cut(s)	391, 777, 1098
EciI	GGCGGA	1 cut(s)	491
Ecl136II	GAGCTC	1 cut(s)	1383
Eco130I	CCWWGG	1 cut(s)	1256
Eco24I	GRGCYC	1 cut(s)	1385
Eco53kI	GAGCTC	1 cut(s)	1383
Eco57I	CTGAAG	2 cut(s)	758, 1092
Eco81I	CCTNAGG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	1383
EcoRI	GAATTC	2 cut(s)	793, 867
EcoT14I	CCWWGG	1 cut(s)	1256
EcoT38I	GRGCYC	1 cut(s)	1385
ErhI	CCWWGG	1 cut(s)	1256
FaeI	CATG	3 cut(s)	286, 1122, 1294
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	2 cut(s)	685, 1027
FatI	CATG	3 cut(s)	282, 1118, 1290
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	6 cut(s)	82, 106, 109, 130, 768, 1309
FokI	GGATG	2 cut(s)	450, 513
FriOI	GRGCYC	1 cut(s)	1385
Fsp4HI	GCNGC	6 cut(s)	82, 106, 109, 130, 768, 1309
FspBI	CTAG	2 cut(s)	443, 726
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	6 cut(s)	82, 106, 109, 130, 768, 1309
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	2 cut(s)	297, 1467
HapII	CCGG	2 cut(s)	1305, 1454
HgaI	GACGC	1 cut(s)	1076
HhaI	GCGC	1 cut(s)	780
Hin1I	GRCGYC	1 cut(s)	1087
Hin1II	CATG	3 cut(s)	286, 1122, 1294
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	1 cut(s)	1327
HindII	GTYRAC	1 cut(s)	1327
HinfI	GANTC	2 cut(s)	562, 719
HpaI	GTTAAC	1 cut(s)	1327
HpaII	CCGG	2 cut(s)	1305, 1454
HphI	GGTGA	2 cut(s)	179, 255
Hpy166II	GTNNAC	1 cut(s)	1327
Hpy188I	TCNGA	6 cut(s)	344, 846, 859, 1003, 1273, 1510
Hpy188III	TCNNGA	5 cut(s)	283, 670, 716, 809, 872
Hpy8I	GTNNAC	1 cut(s)	1327
HpyAV	CCTTC	5 cut(s)	155, 480, 973, 1175, 1288
HpyCH4III	ACNGT	6 cut(s)	143, 304, 586, 1051, 1173, 1429
HpyCH4V	TGCA	7 cut(s)	123, 404, 429, 971, 1031, 1159, 1442
HpyF10VI	GCNNNNNNNGC	9 cut(s)	90, 105, 129, 135, 473, 968, 1028, 1128, 1248
HpyF3I	CTNAG	5 cut(s)	309, 459, 782, 819, 1123
Hsp92I	GRCGYC	1 cut(s)	1087
Hsp92II	CATG	3 cut(s)	286, 1122, 1294
HspAI	GCGC	1 cut(s)	778
KpnI	GGTACC	1 cut(s)	1454
KroI	GCCGGC	1 cut(s)	1304
KroNI	GCCGGC	1 cut(s)	1306
KspAI	GTTAAC	1 cut(s)	1327
Kzo9I	GATC	3 cut(s)	289, 741, 1226
LguI	GCTCTTC	1 cut(s)	777
LmnI	GCTCC	6 cut(s)	75, 233, 344, 356, 1380, 1388
Lsp1109I	GCAGC	3 cut(s)	120, 141, 1320
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	443, 726
MaeIII	GTNAC	1 cut(s)	1423
MalI	GATC	3 cut(s)	291, 743, 1228
MbiI	CCGCTC	1 cut(s)	770
MboI	GATC	3 cut(s)	289, 741, 1226
MhlI	GDGCHC	1 cut(s)	1385
MluCI	AATT	6 cut(s)	793, 867, 938, 1062, 1363, 1514
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	1304
MseI	TTAA	2 cut(s)	1326, 1362
MslI	CAYNNNNRTG	1 cut(s)	1289
MspA1I	CMGCKG	2 cut(s)	111, 992
MspI	CCGG	2 cut(s)	1305, 1454
Mva1269I	GAATGC	1 cut(s)	1251
MwoI	GCNNNNNNNGC	9 cut(s)	90, 105, 129, 135, 473, 968, 1028, 1128, 1248
NaeI	GCCGGC	1 cut(s)	1306
NdeII	GATC	3 cut(s)	289, 741, 1226
NgoMIV	GCCGGC	1 cut(s)	1304
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	286, 1122, 1294
NlaIV	GGNNCC	4 cut(s)	229, 531, 1041, 1452
NmeAIII	GCCGAG	1 cut(s)	442
NspI	RCATGY	1 cut(s)	1122
PagI	TCATGA	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	777
PctI	GAATGC	1 cut(s)	1251
PdiI	GCCGGC	1 cut(s)	1306
PfeI	GAWTC	1 cut(s)	562
PflFI	GACNNNGTC	1 cut(s)	1086
PkrI	GCNGC	6 cut(s)	83, 107, 110, 131, 769, 1310
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PsiI	TTATAA	1 cut(s)	1265
Psp124BI	GAGCTC	1 cut(s)	1385
PspN4I	GGNNCC	4 cut(s)	229, 531, 1041, 1452
PspPI	GGNCC	2 cut(s)	295, 1465
PsyI	GACNNNGTC	1 cut(s)	1086
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	6 cut(s)	61, 314, 802, 930, 976, 1452
RsaNI	GTAC	6 cut(s)	60, 313, 801, 929, 975, 1451
RseI	CAYNNNNRTG	1 cut(s)	1289
SacI	GAGCTC	1 cut(s)	1385
SapI	GCTCTTC	1 cut(s)	777
SaqAI	TTAA	2 cut(s)	1326, 1362
SatI	GCNGC	6 cut(s)	82, 106, 109, 130, 768, 1309
Sau3AI	GATC	3 cut(s)	289, 741, 1226
Sau96I	GGNCC	2 cut(s)	295, 1465
ScaI	AGTACT	2 cut(s)	314, 976
SchI	GAGTC	1 cut(s)	728
SduI	GDGCHC	1 cut(s)	1385
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	2 cut(s)	303, 1017
SmiMI	CAYNNNNRTG	1 cut(s)	1289
SmlI	CTYRAG	1 cut(s)	807
SmoI	CTYRAG	1 cut(s)	807
Sse9I	AATT	6 cut(s)	793, 867, 938, 1062, 1363, 1514
SsiI	CCGC	9 cut(s)	81, 99, 105, 111, 248, 476, 568, 768, 1386
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	2 cut(s)	443, 726
SstI	GAGCTC	1 cut(s)	1385
StyI	CCWWGG	1 cut(s)	1256
TaaI	ACNGT	6 cut(s)	143, 304, 586, 1051, 1173, 1429
TaqI	TCGA	1 cut(s)	65
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	6 cut(s)	793, 867, 938, 1062, 1363, 1514
TatI	WGTACW	3 cut(s)	59, 312, 974
TauI	GCSGC	3 cut(s)	84, 108, 770
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	1326, 1362
Tru9I	TTAA	2 cut(s)	1326, 1362
TscAI	CASTG	4 cut(s)	100, 130, 307, 1178
TseI	GCWGC	3 cut(s)	108, 129, 1308
TspDTI	ATGAA	6 cut(s)	171, 299, 578, 700, 973, 1307
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	4 cut(s)	100, 130, 307, 1178
Tth111I	GACNNNGTC	1 cut(s)	1086
XapI	RAATTY	2 cut(s)	793, 867
XceI	RCATGY	1 cut(s)	1122
XspI	CTAG	2 cut(s)	443, 726
ZrmI	AGTACT	2 cut(s)	314, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.