Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015709

Physical Location & Seq

Genomic Coordinates Reverse (-)

30050435 .. 30051625

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCGATGATGATGAGATTGGAAGATCATTTGAGAATGAAGAAGTTGGCTGACGAGTCCTTTAACCAAATTGTGGCAGAGGTTAAAGCGGTGGCAAGAGACCCAGCAGACCGAGAAGAAGTATCTAAACTGCTGACAGAAAGAGTTGTGTTTGATCTCATTCATGAATTTCAAAGAAAATCCAAGGAAGCACAACAATCGAATGTGTCGATTTCGAACAAGAGAGAACGCGTGGAAGCCCAAGTTGTGATCAAGAAGAGGAAGGTGGTTAGCACAGAGACTAATTATAATTACATTGATGAAAAAGTTGATATTGCTAGAAATTATCTTGAGAAAATTAAGAAGCGAGGTTTTGAAAGCAGGAAAAGGAAACATGGGAATGATTATGGTGATGAAGATGAAGCTAGCAAGTTGATGCTGACGAAGAAGAAGAAGCAGAATAAGGAGAAGGCCAAGAAAGCAGAGAGCAAGGGATCATCTCTACCATCAAAACCCTCTACACCGCCTGACGCGCCTCCTATAGAATTGAAGAGGATGATTGAATCCATGAATGGTCACCACTTGCAATTTGTGATGTATAAGATAATTCATCCTACTGATTTGAACCCGCACCATGACCGTCTCTCGATGCCAAAGAATCAACTGTCTAACAAAAAGTTTCTGGGTAAAGAACTCAAGCAAAAATTGAAAGGTGGTGGATTATTAGAAGTGAAAGTAATAGATCCGTGTTTAACAGAGTATGAATTAAGGATGAAGAGGTGGGTCTTTAAAAGCAACTATTCCTATGTGTTAAACAGTGGCTGGTCCAAGATTTTTACAGATAAGACTAATAACCTTAAGGCAAAGGATATGCTTGAGGTGTGGACGTTTCGAGTTTCCGATCCCAATCTTGTCGACCAAGAACGTATCTGCTTCGCGCTTGTTAAGCATAAAGATGTTAAAGATCCCCAGGAAGATATTGGATCATCGTCGTCCATGAGCAAGAAAGAAGAGGGGAAACAAGATGTTAATGATGGTACTGACAGCATGGAAGCTGTTGGAACGTTGATGAGCAAGAAAGAAGATGTTAATAGTAGCACTGCCTGCGGCGACGAAGCTAATGAATCATCCATGGCCAAGAACCAGTCTGAGTTTGGAGCCAGGAAACATATCACAATCAAGTTCAGAGACGTAACATTTGCAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

397

Amino Acids

45.49

Weight (kDa)

9.37

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015709)

Species	Orthologous Gene IDs
malus_domestica	MD02G1271600.v1.1
prunus_persica	Prupe.6G353200_v2.0.a1 Prupe.6G353300_v2.0.a1 Prupe.6G353400_v2.0.a1 Prupe.6G355100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415241
rosa_laevigata	RLG00000008087 RLG00000025856
rosa_multiflora	Rmu_sc0001421.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359050
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG193200 Rh4BG191600 Rh4CG204300 Rh4DG191100
rosa_wichuraiana	Rw4G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	894
AccII	CGCG	3 cut(s)	231, 512, 917
AciI	CCGC	4 cut(s)	89, 503, 608, 1086
AclI	AACGTT	1 cut(s)	1043
AclWI	GGATC	5 cut(s)	481, 716, 875, 938, 970
AcoI	YGGCCR	1 cut(s)	1113
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	1 cut(s)	1018
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	836
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	6 cut(s)	173, 356, 529, 542, 604, 688
AjnI	CCWGG	2 cut(s)	948, 1139
AluBI	AGCT	3 cut(s)	404, 1034, 1097
AluI	AGCT	3 cut(s)	404, 1034, 1097
Alw26I	GTCTC	4 cut(s)	93, 272, 626, 1161
AlwI	GGATC	5 cut(s)	481, 716, 875, 938, 970
AlwNI	CAGNNNCTG	1 cut(s)	801
AoxI	GGCC	2 cut(s)	450, 1113
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	1 cut(s)	1160
AspLEI	GCGC	2 cut(s)	514, 919
AspS9I	GGNCC	1 cut(s)	804
AsuHPI	GGTGA	2 cut(s)	401, 548
AsuII	TTCGAA	1 cut(s)	215
AsuNHI	GCTAGC	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	804
BalI	TGGCCA	1 cut(s)	1115
BccI	CCATC	2 cut(s)	493, 1007
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	2 cut(s)	950, 1141
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	4 cut(s)	93, 272, 626, 1161
BfaI	CTAG	2 cut(s)	318, 405
BfmI	CTRYAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	836
BisI	GCNGC	1 cut(s)	1087
BlsI	GCNGC	1 cut(s)	1088
Bme1390I	CCNGG	2 cut(s)	950, 1141
Bme18I	GGWCC	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	804
BmiI	GGNNCC	1 cut(s)	1138
BmrFI	CCNGG	2 cut(s)	950, 1141
BmsI	GCATC	2 cut(s)	405, 618
BmtI	GCTAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	3 cut(s)	350, 659, 875
BsaBI	GATNNNNATC	1 cut(s)	885
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	183, 948, 1110
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	1123
Bse8I	GATNNNNATC	1 cut(s)	885
BseBI	CCWGG	2 cut(s)	950, 1141
BseDI	CCNNGG	3 cut(s)	183, 948, 1110
BseGI	GGATG	4 cut(s)	540, 589, 756, 1106
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	1119
BseNI	ACTGG	1 cut(s)	1123
BseYI	CCCAGC	1 cut(s)	103
Bsh1236I	CGCG	3 cut(s)	231, 512, 917
BshFI	GGCC	2 cut(s)	452, 1115
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	4 cut(s)	93, 272, 626, 1161
BsmBI	CGTCTC	2 cut(s)	626, 1161
BsnI	GGCC	2 cut(s)	452, 1115
Bso31I	GGTCTC	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	215
Bsp143I	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	4 cut(s)	89, 503, 608, 1086
BspANI	GGCC	2 cut(s)	452, 1115
BspCNI	CTCAG	1 cut(s)	1120
BspFNI	CGCG	3 cut(s)	231, 512, 917
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	1138
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	5 cut(s)	481, 716, 875, 938, 970
BspT104I	TTCGAA	1 cut(s)	215
BspTI	CTTAAG	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	1123
BssECI	CCNNGG	3 cut(s)	183, 948, 1110
BssMI	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
BssT1I	CCWWGG	2 cut(s)	183, 1110
Bst2UI	CCWGG	2 cut(s)	950, 1141
Bst4CI	ACNGT	3 cut(s)	620, 645, 797
Bst6I	CTCTTC	4 cut(s)	251, 524, 749, 984
BstAFI	CTTAAG	1 cut(s)	836
BstAPI	GCANNNNNTGC	1 cut(s)	1083
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	406, 1084
BstDEI	CTNAG	1 cut(s)	1128
BstDSI	CCRYGG	1 cut(s)	1110
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	4 cut(s)	540, 589, 756, 1106
BstFNI	CGCG	3 cut(s)	231, 512, 917
BstHHI	GCGC	2 cut(s)	514, 919
BstKTI	GATC	8 cut(s)	28, 157, 252, 476, 724, 883, 946, 965
BstMAI	GTCTC	4 cut(s)	93, 272, 626, 1161
BstMBI	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 511, 925, 1083
BstNI	CCWGG	2 cut(s)	950, 1141
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	948, 1139
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	3 cut(s)	231, 512, 917
BstX2I	RGATCY	2 cut(s)	721, 943
BstYI	RGATCY	2 cut(s)	721, 943
BsuRI	GGCC	2 cut(s)	452, 1115
BtgI	CCRYGG	1 cut(s)	1110
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	540, 589, 756, 1106
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	2 cut(s)	802, 1077
Cac8I	GCNNGC	2 cut(s)	406, 1084
CaiI	CAGNNNCTG	1 cut(s)	801
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	2 cut(s)	514, 919
Cfr13I	GGNCC	1 cut(s)	804
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	1017
CviAII	CATG	7 cut(s)	164, 374, 547, 614, 976, 1027, 1111
CviJI	RGCY	9 cut(s)	50, 239, 404, 452, 801, 1034, 1097, 1115, 1139
CviKI_1	RGCY	9 cut(s)	50, 239, 404, 452, 801, 1034, 1097, 1115, 1139
CviQI	GTAC	1 cut(s)	1017
DdeI	CTNAG	1 cut(s)	1128
DpnI	GATC	8 cut(s)	27, 156, 251, 475, 723, 882, 945, 964
DpnII	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
DraI	TTTAAA	1 cut(s)	769
EaeI	YGGCCR	1 cut(s)	1113
Eam1104I	CTCTTC	4 cut(s)	251, 524, 749, 984
EarI	CTCTTC	4 cut(s)	251, 524, 749, 984
Eco130I	CCWWGG	2 cut(s)	183, 1110
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	804
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	948, 1139
EcoT14I	CCWWGG	2 cut(s)	183, 1110
ErhI	CCWWGG	2 cut(s)	183, 1110
Esp3I	CGTCTC	2 cut(s)	626, 1161
FaeI	CATG	7 cut(s)	167, 377, 550, 617, 979, 1030, 1114
FatI	CATG	7 cut(s)	163, 373, 546, 613, 975, 1026, 1110
FauI	CCCGC	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	1 cut(s)	1087
FokI	GGATG	4 cut(s)	547, 576, 763, 1093
Fsp4HI	GCNGC	1 cut(s)	1087
FspBI	CTAG	2 cut(s)	318, 405
GlaI	GCGC	2 cut(s)	513, 918
GluI	GCNGC	1 cut(s)	1087
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	452, 1115
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	2 cut(s)	514, 919
Hin1II	CATG	7 cut(s)	167, 377, 550, 617, 979, 1030, 1114
Hin6I	GCGC	2 cut(s)	512, 917
HinP1I	GCGC	2 cut(s)	512, 917
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HinfI	GANTC	4 cut(s)	56, 542, 637, 1103
HphI	GGTGA	2 cut(s)	401, 548
Hpy166II	GTNNAC	2 cut(s)	864, 895
Hpy188I	TCNGA	3 cut(s)	880, 1129, 1166
Hpy188III	TCNNGA	4 cut(s)	164, 253, 329, 625
Hpy8I	GTNNAC	2 cut(s)	864, 895
Hpy99I	CGWCG	2 cut(s)	973, 1094
HpyAV	CCTTC	2 cut(s)	256, 442
HpyCH4III	ACNGT	3 cut(s)	620, 645, 797
HpyCH4IV	ACGT	4 cut(s)	866, 904, 1043, 1170
HpyCH4V	TGCA	2 cut(s)	565, 1181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 511, 925, 1083
HpyF3I	CTNAG	1 cut(s)	1128
HpySE526I	ACGT	4 cut(s)	866, 904, 1043, 1170
Hsp92II	CATG	7 cut(s)	167, 377, 550, 617, 979, 1030, 1114
HspAI	GCGC	2 cut(s)	512, 917
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
LmnI	GCTCC	1 cut(s)	1136
LweI	GCATC	2 cut(s)	405, 618
MaeI	CTAG	2 cut(s)	318, 405
MaeII	ACGT	4 cut(s)	866, 904, 1043, 1170
MaeIII	GTNAC	2 cut(s)	554, 1171
MalI	GATC	8 cut(s)	27, 156, 251, 475, 723, 882, 945, 964
MboI	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
MflI	RGATCY	2 cut(s)	721, 943
MlsI	TGGCCA	1 cut(s)	1115
MluI	ACGCGT	1 cut(s)	229
MluNI	TGGCCA	1 cut(s)	1115
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	1018
MnlI	CCTC	9 cut(s)	73, 252, 341, 505, 525, 525, 750, 850, 985
Mox20I	TGGCCA	1 cut(s)	1115
MscI	TGGCCA	1 cut(s)	1115
MslI	CAYNNNNRTG	2 cut(s)	378, 933
Msp20I	TGGCCA	1 cut(s)	1115
MspCI	CTTAAG	1 cut(s)	836
MspR9I	CCNGG	2 cut(s)	950, 1141
MvaI	CCWGG	2 cut(s)	950, 1141
MvnI	CGCG	3 cut(s)	231, 512, 917
MwoI	GCNNNNNNNGC	4 cut(s)	458, 511, 925, 1083
NcoI	CCATGG	1 cut(s)	1110
NdeII	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	7 cut(s)	167, 377, 550, 617, 979, 1030, 1114
NlaIV	GGNNCC	1 cut(s)	1138
NmuCI	GTSAC	1 cut(s)	554
NspV	TTCGAA	1 cut(s)	215
PagI	TCATGA	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	542, 637, 1103
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	1088
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	288
Psp1406I	AACGTT	1 cut(s)	1043
Psp6I	CCWGG	2 cut(s)	948, 1139
PspEI	GGTNACC	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	2 cut(s)	948, 1139
PspN4I	GGNNCC	1 cut(s)	1138
PspPI	GGNCC	1 cut(s)	804
PstNI	CAGNNNCTG	1 cut(s)	801
PsuI	RGATCY	2 cut(s)	721, 943
RsaI	GTAC	1 cut(s)	1018
RsaNI	GTAC	1 cut(s)	1017
RseI	CAYNNNNRTG	2 cut(s)	378, 933
SalI	GTCGAC	1 cut(s)	893
SatI	GCNGC	1 cut(s)	1087
Sau3AI	GATC	8 cut(s)	25, 154, 249, 473, 721, 880, 943, 962
Sau96I	GGNCC	1 cut(s)	804
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	950, 1141
SfaNI	GCATC	2 cut(s)	405, 618
SfcI	CTRYAG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	1 cut(s)	804
SmiMI	CAYNNNNRTG	2 cut(s)	378, 933
SmlI	CTYRAG	4 cut(s)	329, 674, 836, 854
SmoI	CTYRAG	4 cut(s)	329, 674, 836, 854
SsiI	CCGC	4 cut(s)	89, 503, 608, 1086
SspMI	CTAG	2 cut(s)	318, 405
StyD4I	CCNGG	2 cut(s)	948, 1139
StyI	CCWWGG	2 cut(s)	183, 1110
TaaI	ACNGT	3 cut(s)	620, 645, 797
TaiI	ACGT	4 cut(s)	869, 907, 1046, 1173
TaqI	TCGA	6 cut(s)	200, 209, 215, 626, 871, 894
TaqII	GACCGA	1 cut(s)	126
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	3 cut(s)	542, 637, 1103
TscAI	CASTG	2 cut(s)	802, 1084
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	2 cut(s)	802, 1084
Van91I	CCANNNNNTGG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	804
XapI	RAATTY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	2 cut(s)	956, 1130
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	2 cut(s)	318, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.