Rw4G016430

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015709
Physical Location & Seq
Reverse (-)
37500942 .. 37501988
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016430.1

Sequence Viewer

Length: 1047 bp
ATGGGGATCAGCCTTGAAGATTTGAAAAGGAGAGAGTATAGCGAGTCTTTTGATGAACTTTTAGCAAAAGCTAAAGAATTTGCAACAGACCGAGAGGAAGCACTTGAAATTTTGAGAAATTGGATTCTGTATGATTTGAGTTGTAGAAAATCCACAAGAGAAGAAAAAAAATCGACTAATATTGATCCGAAGGAGAAGGCTGAAAATCGACGTGACAGATGCAAAATAGTGATCAAGAAGATGAAAGCTAGCTCTTCGAAGCCATGCAATGATATAAGAAAAGATCTGGTCCCTTGCAATGACGAAGATGAAGAAGCTTCTCATTCTTCTTCTGCAAGGAATAATGATCAGCAGATGAAAAGGAAGCAAAGTCCTTATGCATGCTGCTCCAAAATTAGTGAAGATCAAGATAAATGTTTCAATAAACTCAAAGAAGCTTCTTCTCCTCATTCTTCTACAAGGAAGAAAAGGAAGAGCCAAAGTATTGAAGATCAACATGCATATTACTATACGGTCTATAACCATGCAGGTAAAGCTGGCAATTTGATGAACTTGATGGAGACGAAGAAGAAGGTGAAGAAGCCACGAGCTTTACCATTTGATAGTCCACCACCAGAGTTGCCTACGGATTTAAGGAACAAGATCGAATCCCTGCATGGCTCCGAGGCCAAACTAGTAATACAGAAGGAGATTACAAATACTGATGTGAACCGTCATCATGATCGTCTGAATATGCCGAGGAACCAAGTATTGACCATGGACGTTCTCAATGAACAGGAGCGAAAAAAGGTTTTTGAACATGGTTTGGAAGTGAGAGTGATACAACCATGTCTGGAAGAGAGAAACTTACATTTAAGGAAGTGGAATTCGCACAACGGCGGCTATTCCTATGTCTTAAACAGTGGTTGGAAAGATGTTGTTAGTAAGTGTGAGGATCGTATTAGGCCTGGTAATACAATTCAGGTTTGGTCATTCCGAGTTGATGATCGCGGAGAGGTCTGGTTTGCCCTTGTGTGCCATGGGCCAAAAAAAACTGTAACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

348

Amino Acids

40.52

Weight (kDa)

9.16

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 208 - 309 4e-19 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 518
AccII CGCG 1 cut(s) 990
AciI CCGC 2 cut(s) 879, 990
AclWI GGATC 3 cut(s) 14, 179, 942
AcsI RAATTY 3 cut(s) 77, 108, 865
AgsI TTSAA 6 cut(s) 17, 25, 107, 421, 488, 797
AhlI ACTAGT 1 cut(s) 673
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 946
AluBI AGCT 7 cut(s) 71, 248, 252, 317, 437, 536, 590
AluI AGCT 7 cut(s) 71, 248, 252, 317, 437, 536, 590
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 3 cut(s) 14, 179, 942
AoxI GGCC 3 cut(s) 666, 944, 1022
ApeKI GCWGC 1 cut(s) 384
ApoI RAATTY 3 cut(s) 77, 108, 865
AspS9I GGNCC 2 cut(s) 289, 1022
AsuHPI GGTGA 1 cut(s) 586
AsuII TTCGAA 1 cut(s) 257
AsuNHI GCTAGC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 289
BauI CACGAG 1 cut(s) 585
BbvI GCAGC 1 cut(s) 371
BccI CCATC 1 cut(s) 550
BceAI ACGGC 1 cut(s) 892
BciT130I CCWGG 1 cut(s) 948
BclI TGATCA 2 cut(s) 231, 346
BcoDI GTCTC 1 cut(s) 554
BcuI ACTAGT 1 cut(s) 673
BfaI CTAG 2 cut(s) 249, 674
BfuAI ACCTGC 1 cut(s) 518
BglII AGATCT 1 cut(s) 283
BisI GCNGC 2 cut(s) 385, 880
BlsI GCNGC 2 cut(s) 386, 881
Bme1390I CCNGG 1 cut(s) 948
Bme18I GGWCC 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 289, 1022
BmiI GGNNCC 3 cut(s) 291, 661, 743
BmrFI CCNGG 1 cut(s) 948
BmsI GCATC 1 cut(s) 209
BmtI GCTAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 663, 737, 756, 1018
Bse3DI GCAATG 2 cut(s) 274, 304
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 4 cut(s) 663, 737, 756, 1018
BseMI GCAATG 2 cut(s) 274, 304
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 990
BshFI GGCC 3 cut(s) 668, 946, 1024
BslFI GGGAC 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 554
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 3 cut(s) 668, 946, 1024
Bsp119I TTCGAA 1 cut(s) 257
Bsp19I CCATGG 2 cut(s) 756, 1018
BspACI CCGC 2 cut(s) 879, 990
BspANI GGCC 3 cut(s) 668, 946, 1024
BspFNI CGCG 1 cut(s) 990
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 291, 661, 743
BspMI ACCTGC 1 cut(s) 518
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 14, 179, 942
BspQI GCTCTTC 2 cut(s) 259, 467
BspT104I TTCGAA 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 274, 304
BssECI CCNNGG 4 cut(s) 663, 737, 756, 1018
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 756, 1018
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 4 cut(s) 514, 713, 902, 1036
Bst6I CTCTTC 3 cut(s) 259, 467, 831
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 250, 382, 538
BstDSI CCRYGG 2 cut(s) 756, 1018
BstFNI CGCG 1 cut(s) 990
BstMAI GTCTC 1 cut(s) 554
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 1 cut(s) 948
BstNSI RCATGY 2 cut(s) 384, 500
BstSCI CCNGG 1 cut(s) 946
BstUI CGCG 1 cut(s) 990
BstV1I GCAGC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 3 cut(s) 668, 946, 1024
BtgI CCRYGG 2 cut(s) 756, 1018
BtrI CACGTC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 907
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 3 cut(s) 250, 382, 538
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 289, 1022
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
Eam1104I CTCTTC 3 cut(s) 259, 467, 831
EarI CTCTTC 3 cut(s) 259, 467, 831
Eco130I CCWWGG 2 cut(s) 756, 1018
Eco147I AGGCCT 1 cut(s) 946
Eco47I GGWCC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 865
EcoRII CCWGG 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 756, 1018
EcoT22I ATGCAT 2 cut(s) 382, 502
ErhI CCWWGG 2 cut(s) 756, 1018
Esp3I CGTCTC 1 cut(s) 554
FaqI GGGAC 1 cut(s) 275
FbaI TGATCA 2 cut(s) 231, 346
Fnu4HI GCNGC 2 cut(s) 385, 880
Fsp4HI GCNGC 2 cut(s) 385, 880
FspBI CTAG 2 cut(s) 249, 674
GluI GCNGC 2 cut(s) 385, 880
HaeIII GGCC 3 cut(s) 668, 946, 1024
HindIII AAGCTT 2 cut(s) 315, 435
HinfI GANTC 3 cut(s) 44, 124, 647
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 2 cut(s) 608, 709
Hpy188I TCNGA 4 cut(s) 189, 664, 729, 977
Hpy188III TCNNGA 4 cut(s) 235, 407, 719, 833
Hpy8I GTNNAC 2 cut(s) 608, 709
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 4 cut(s) 184, 190, 565, 679
HpyCH4III ACNGT 4 cut(s) 514, 713, 902, 1036
HpyCH4IV ACGT 2 cut(s) 211, 762
HpyCH4V TGCA 9 cut(s) 83, 222, 267, 297, 335, 380, 500, 527, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpySE526I ACGT 2 cut(s) 211, 762
Ksp22I TGATCA 2 cut(s) 231, 346
LguI GCTCTTC 2 cut(s) 259, 467
LmnI GCTCC 3 cut(s) 392, 665, 778
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 1 cut(s) 209
MaeI CTAG 2 cut(s) 249, 674
MaeII ACGT 2 cut(s) 211, 762
MaeIII GTNAC 2 cut(s) 212, 1036
MflI RGATCY 1 cut(s) 283
MluCI AATT 7 cut(s) 77, 108, 118, 393, 541, 865, 957
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 887
MnlI CCTC 6 cut(s) 88, 456, 658, 732, 925, 988
Mph1103I ATGCAT 2 cut(s) 382, 502
MseI TTAA 3 cut(s) 632, 854, 896
MspR9I CCNGG 1 cut(s) 948
MvaI CCWGG 1 cut(s) 948
MvnI CGCG 1 cut(s) 990
MwoI GCNNNNNNNGC 1 cut(s) 533
NcoI CCATGG 2 cut(s) 756, 1018
NheI GCTAGC 1 cut(s) 248
NlaIV GGNNCC 3 cut(s) 291, 661, 743
NmeAIII GCCGAG 1 cut(s) 762
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 382, 502
NspI RCATGY 2 cut(s) 384, 500
NspV TTCGAA 1 cut(s) 257
PaeI GCATGC 1 cut(s) 384
PagI TCATGA 1 cut(s) 718
PceI AGGCCT 1 cut(s) 946
PciSI GCTCTTC 2 cut(s) 259, 467
PfeI GAWTC 2 cut(s) 124, 647
PkrI GCNGC 2 cut(s) 386, 881
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 946
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 3 cut(s) 291, 661, 743
PspPI GGNCC 2 cut(s) 289, 1022
PsuI RGATCY 1 cut(s) 283
SapI GCTCTTC 2 cut(s) 259, 467
SaqAI TTAA 3 cut(s) 632, 854, 896
SatI GCNGC 2 cut(s) 385, 880
Sau96I GGNCC 2 cut(s) 289, 1022
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 948
SfaNI GCATC 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 1 cut(s) 289
SpeI ACTAGT 1 cut(s) 673
SphI GCATGC 1 cut(s) 384
Sse9I AATT 7 cut(s) 77, 108, 118, 393, 541, 865, 957
SseBI AGGCCT 1 cut(s) 946
SsiI CCGC 2 cut(s) 879, 990
SspI AATATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 249, 674
StuI AGGCCT 1 cut(s) 946
StyD4I CCNGG 1 cut(s) 946
StyI CCWWGG 2 cut(s) 756, 1018
TaaI ACNGT 4 cut(s) 514, 713, 902, 1036
TaiI ACGT 2 cut(s) 214, 765
TaqI TCGA 4 cut(s) 173, 208, 257, 645
TaqII GACCGA 1 cut(s) 105
TasI AATT 7 cut(s) 77, 108, 118, 393, 541, 865, 957
TauI GCSGC 1 cut(s) 882
TfiI GAWTC 2 cut(s) 124, 647
Tru1I TTAA 3 cut(s) 632, 854, 896
Tru9I TTAA 3 cut(s) 632, 854, 896
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 384
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 6 cut(s) 69, 257, 324, 371, 563, 786
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 3 cut(s) 77, 108, 865
XceI RCATGY 2 cut(s) 384, 500
XspI CTAG 2 cut(s) 249, 674
Zsp2I ATGCAT 2 cut(s) 382, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.