Rroxscaffold_5G00359050

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015709
Physical Location & Seq
Reverse (-)
39089808 .. 39090620
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359050.1

Sequence Viewer

Length: 813 bp
ATGGGGATCAGCCTTGAAGATTTGAAAAGGAGAGAGTATAGCGAGTCTTTTGATGAACTTTTGGCGAAAGCTAAAGAATTTGCAACAGACCGAGAGGAACCACTTGAAATTTTGAGAAATTGGATTCTGTATGATTTGAGTTGTAGAAAATCCACAAGAGAAGGAGAAAATTCGACTAATATTGATCCCAAGGAGAAGGCTGAAAATCGACGTGACAGATACAAAATAGTGATCAAGAAGATGAAAGCTAGCTCTACGAAGCCATGCAGTGATATAAGAAAAGATCTGGTCCCTTGCAATGACGAAGATGAAGAAGCTTCTCATCCTTCTTCTTCAAGGAATAATGATCAGCAGATGAAAAGGAAGCAAAGTCCTTATGCATGCTGCTCCAAAATTAGTGAAGATCAAGATAAATGTTTCAATAAACTCAAAGAAGCTTCTTCTCCTCATTCTTCTACGAGGAAGAAAAGGAAGAGCCAAAGTATTGAAGATCAACATGCATATTACTATACGGTCTATAACTATGCAGGTAAAGATGGCAATTTGATGAACTTGATGGAGACGAAGAAGAAGGTGAAGAAGCCACGAGCTTTACCATTTGATGGTCCACCACCAGAGTTGCCTACGGATTTAAGAAACAAGATCGAATCCCTGCATGGCTCCGAGGCCAAACTAGTAATACAGAAGGAGATTACAAATACTGATGTGAACCGCCATCATGATCGTCTGAATATGCCGAGGAACCAAGTACTAACCATGGACGTTCTCAATGAACAAGAGCGAAAAAGGTTTTTGAACATGGTTTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

270

Amino Acids

31.59

Weight (kDa)

9.02

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 208 - 262 2.8e-08 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 1 cut(s) 712
AclWI GGATC 2 cut(s) 14, 179
AcsI RAATTY 3 cut(s) 77, 108, 169
AfaI GTAC 1 cut(s) 750
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 7 cut(s) 17, 25, 107, 336, 421, 488, 796
AhlI ACTAGT 1 cut(s) 673
AjiI CACGTC 1 cut(s) 212
AluBI AGCT 6 cut(s) 71, 248, 252, 317, 437, 590
AluI AGCT 6 cut(s) 71, 248, 252, 317, 437, 590
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 2 cut(s) 14, 179
AoxI GGCC 1 cut(s) 666
ApeKI GCWGC 1 cut(s) 384
ApoI RAATTY 3 cut(s) 77, 108, 169
AspS9I GGNCC 2 cut(s) 289, 605
AsuHPI GGTGA 1 cut(s) 586
AsuNHI GCTAGC 1 cut(s) 248
AvaII GGWCC 2 cut(s) 289, 605
BauI CACGAG 1 cut(s) 585
BbvI GCAGC 1 cut(s) 371
BccI CCATC 4 cut(s) 530, 550, 596, 723
BclI TGATCA 2 cut(s) 231, 346
BcoDI GTCTC 1 cut(s) 554
BcuI ACTAGT 1 cut(s) 673
BfaI CTAG 2 cut(s) 249, 674
BfuAI ACCTGC 1 cut(s) 518
BglII AGATCT 1 cut(s) 283
BisI GCNGC 1 cut(s) 385
BlsI GCNGC 1 cut(s) 386
BmcAI AGTACT 1 cut(s) 750
Bme18I GGWCC 2 cut(s) 289, 605
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 289, 605
BmiI GGNNCC 4 cut(s) 99, 291, 661, 743
BmtI GCTAGC 1 cut(s) 252
BsaJI CCNNGG 4 cut(s) 189, 663, 737, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 4 cut(s) 189, 663, 737, 756
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 371
BshFI GGCC 1 cut(s) 668
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 554
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 1 cut(s) 668
Bsp143I GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 1 cut(s) 712
BspANI GGCC 1 cut(s) 668
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 4 cut(s) 99, 291, 661, 743
BspMI ACCTGC 1 cut(s) 518
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 2 cut(s) 14, 179
BspQI GCTCTTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 189, 663, 737, 756
BssMI GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 189, 756
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 250, 382
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 9 cut(s) 9, 187, 234, 286, 349, 406, 493, 645, 724
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
BstNSI RCATGY 2 cut(s) 384, 500
BstV1I GCAGC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 668
BtgI CCRYGG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 2 cut(s) 250, 382
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 289, 605
Csp6I GTAC 1 cut(s) 749
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 7 cut(s) 264, 381, 497, 656, 719, 757, 799
CviQI GTAC 1 cut(s) 749
DpnI GATC 9 cut(s) 8, 186, 233, 285, 348, 405, 492, 644, 723
DpnII GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco130I CCWWGG 2 cut(s) 189, 756
Eco47I GGWCC 2 cut(s) 289, 605
EcoT14I CCWWGG 2 cut(s) 189, 756
EcoT22I ATGCAT 2 cut(s) 382, 502
ErhI CCWWGG 2 cut(s) 189, 756
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 7 cut(s) 267, 384, 500, 659, 722, 760, 802
FaqI GGGAC 1 cut(s) 275
FatI CATG 7 cut(s) 263, 380, 496, 655, 718, 756, 798
FbaI TGATCA 2 cut(s) 231, 346
Fnu4HI GCNGC 1 cut(s) 385
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 2 cut(s) 249, 674
GluI GCNGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 668
Hin1II CATG 7 cut(s) 267, 384, 500, 659, 722, 760, 802
HindIII AAGCTT 2 cut(s) 315, 435
HinfI GANTC 3 cut(s) 44, 124, 647
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 2 cut(s) 608, 709
Hpy188I TCNGA 2 cut(s) 664, 729
Hpy188III TCNNGA 3 cut(s) 235, 407, 719
Hpy8I GTNNAC 2 cut(s) 608, 709
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 5 cut(s) 155, 190, 336, 565, 679
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 2 cut(s) 211, 762
HpyCH4V TGCA 7 cut(s) 83, 267, 297, 380, 500, 527, 655
HpySE526I ACGT 2 cut(s) 211, 762
Hsp92II CATG 7 cut(s) 267, 384, 500, 659, 722, 760, 802
Ksp22I TGATCA 2 cut(s) 231, 346
Kzo9I GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 2 cut(s) 392, 665
LpnPI CCDG 4 cut(s) 272, 513, 627, 665
Lsp1109I GCAGC 1 cut(s) 371
MaeI CTAG 2 cut(s) 249, 674
MaeII ACGT 2 cut(s) 211, 762
MaeIII GTNAC 1 cut(s) 212
MalI GATC 9 cut(s) 8, 186, 233, 285, 348, 405, 492, 644, 723
MboI GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
MflI RGATCY 1 cut(s) 283
MluCI AATT 6 cut(s) 77, 108, 118, 169, 393, 541
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 5 cut(s) 88, 453, 456, 658, 732
Mph1103I ATGCAT 2 cut(s) 382, 502
MseI TTAA 1 cut(s) 632
NcoI CCATGG 1 cut(s) 756
NdeII GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 7 cut(s) 267, 384, 500, 659, 722, 760, 802
NlaIV GGNNCC 4 cut(s) 99, 291, 661, 743
NmeAIII GCCGAG 1 cut(s) 762
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 382, 502
NspI RCATGY 2 cut(s) 384, 500
PaeI GCATGC 1 cut(s) 384
PagI TCATGA 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 124, 647
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 1 cut(s) 386
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspN4I GGNNCC 4 cut(s) 99, 291, 661, 743
PspPI GGNCC 2 cut(s) 289, 605
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 750
RsaNI GTAC 1 cut(s) 749
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 9 cut(s) 6, 184, 231, 283, 346, 403, 490, 642, 721
Sau96I GGNCC 2 cut(s) 289, 605
ScaI AGTACT 1 cut(s) 750
SchI GAGTC 1 cut(s) 53
SinI GGWCC 2 cut(s) 289, 605
SpeI ACTAGT 1 cut(s) 673
SphI GCATGC 1 cut(s) 384
Sse9I AATT 6 cut(s) 77, 108, 118, 169, 393, 541
SsiI CCGC 1 cut(s) 712
SspI AATATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 249, 674
StyI CCWWGG 2 cut(s) 189, 756
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 2 cut(s) 214, 765
TaqI TCGA 3 cut(s) 173, 208, 645
TaqII GACCGA 1 cut(s) 105
TasI AATT 6 cut(s) 77, 108, 118, 169, 393, 541
TatI WGTACW 1 cut(s) 748
TfiI GAWTC 2 cut(s) 124, 647
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 384
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 6 cut(s) 69, 257, 324, 371, 563, 786
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 289, 605
XapI RAATTY 3 cut(s) 77, 108, 169
XceI RCATGY 2 cut(s) 384, 500
XspI CTAG 2 cut(s) 249, 674
ZrmI AGTACT 1 cut(s) 750
Zsp2I ATGCAT 2 cut(s) 382, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.