Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015709

Physical Location & Seq

Genomic Coordinates Forward (+)

30169822 .. 30170769

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G355100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAGCCCAAGTTGTGATCAAGAAGAGGAAGATGGTTAGCACAAAGACTAATTATAATTACATTGATGAAAAAGCTGCTGCTGCTAGAAATTACCTTGAGAAAATTAAGAAGCGAGGTTTCGAAAGCAAGAAAAGGAAACATGGGGATGATTATGATGATAAAGATGAAGGTAGCAAGTTGATGATGAAGAAGAAGAAGAAGCAGAATAAGGAGAAGGCCAAGAAAGCAGTGAGCAAGGTATCAGCTCTTCCATCAAAACCCTTTACACCGCCTCACGCGCCTCCTATAGAATTGAGGAACATGATTGAATCCATGCAGGGTCACCACTTACAATTTCTGACGTATAAGATACTTCATGATACTGATTTGAACCCACACCATGACCGTCTCTCGATGCCAAAGAATCAACTGTTTGACAAAAAGTTTCTAGGTAAAGAACTCAAGGAAAAAGTGAAAGGTGGTGGATTATTAGAAGTGAAAGTAATAGATCCGTGTTTAACAGCGTATGAATTAAGGATGAAGAGGTGGGTCTTTAAAACCAGCTATTCCTATGTGTTAAACAGTGGCTGGTCTAAGATTTTTACAGATAAGACTAATAACCTTAAGGCAAAGGATATGCTTGAGGTGTGGACGTTTCGAGTTTCCGATCCCAATCTTGTCGACCAAGAACGTATCTGCTTCGCGCTTGTTAAGCATAAAGATGTTAAATATCCCCAGGAAGATATTGGATCATCGTCGTCCATGAGCAAGAAAGAAGAGGGGAAAGAAGATGTTAATGGTGGTACTGACAGCATGGAAGGTGTTGGATCGTCGATGAGCAAGAAAGAAGATGTTAATGGTAGCACTGCCCACGATGAAGCTAATGAATCATCCATGACCGAGAAATTTGGAGCCAGAAAACATATCACAATCAAGTTTAGAAACATAACATTTGCAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

316

Amino Acids

36.12

Weight (kDa)

9.57

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015709)

Species	Orthologous Gene IDs
malus_domestica	MD02G1271600.v1.1
prunus_persica	Prupe.6G353200_v2.0.a1 Prupe.6G353300_v2.0.a1 Prupe.6G353400_v2.0.a1 Prupe.6G355100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415241
rosa_laevigata	RLG00000008087 RLG00000025856
rosa_multiflora	Rmu_sc0001421.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359050
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG193200 Rh4BG191600 Rh4CG204300 Rh4DG191100
rosa_wichuraiana	Rw4G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	2 cut(s)	281, 686
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	4 cut(s)	485, 644, 739, 817
AcsI	RAATTY	1 cut(s)	887
AfaI	GTAC	1 cut(s)	787
AflII	CTTAAG	1 cut(s)	605
AgsI	TTSAA	2 cut(s)	311, 373
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	4 cut(s)	77, 248, 546, 863
AluI	AGCT	4 cut(s)	77, 248, 546, 863
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	4 cut(s)	485, 644, 739, 817
AlwNI	CAGNNNCTG	1 cut(s)	570
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	3 cut(s)	77, 80, 83
ApoI	RAATTY	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	283, 688
AsuHPI	GGTGA	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	123
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
BbvI	GCAGC	3 cut(s)	64, 67, 70
BccI	CCATC	2 cut(s)	28, 262
BciT130I	CCWGG	1 cut(s)	719
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	87, 431
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	605
BisI	GCNGC	3 cut(s)	78, 81, 84
BlsI	GCNGC	3 cut(s)	79, 82, 85
Bme1390I	CCNGG	1 cut(s)	719
BmiI	GGNNCC	1 cut(s)	895
BmrFI	CCNGG	1 cut(s)	719
BmsI	GCATC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	3 cut(s)	119, 428, 644
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	3 cut(s)	154, 525, 872
BseJI	GATNNNNATC	1 cut(s)	654
BseXI	GCAGC	3 cut(s)	64, 67, 70
Bsh1236I	CGCG	2 cut(s)	281, 686
BshFI	GGCC	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	18, 490, 649, 731, 809
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	221
BspFNI	CGCG	2 cut(s)	281, 686
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	895
BspPI	GGATC	4 cut(s)	485, 644, 739, 817
BspQI	GCTCTTC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	5 cut(s)	18, 490, 649, 731, 809
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	3 cut(s)	389, 414, 566
Bst6I	CTCTTC	4 cut(s)	20, 255, 518, 753
BstAFI	CTTAAG	1 cut(s)	605
BstBI	TTCGAA	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	576
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	3 cut(s)	154, 525, 872
BstFNI	CGCG	2 cut(s)	281, 686
BstHHI	GCGC	2 cut(s)	283, 688
BstKTI	GATC	5 cut(s)	21, 493, 652, 734, 812
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	18, 490, 649, 731, 809
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 227, 280, 694
BstNI	CCWGG	1 cut(s)	719
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	717
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	2 cut(s)	281, 686
BstV1I	GCAGC	3 cut(s)	64, 67, 70
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	154, 525, 872
BtsI	GCAGTG	2 cut(s)	237, 846
BtsIMutI	CAGTG	3 cut(s)	237, 571, 846
CaiI	CAGNNNCTG	1 cut(s)	570
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	2 cut(s)	283, 688
Csp6I	GTAC	1 cut(s)	786
CviAII	CATG	8 cut(s)	143, 304, 316, 359, 383, 745, 796, 877
CviJI	RGCY	8 cut(s)	8, 77, 221, 248, 546, 570, 863, 896
CviKI_1	RGCY	8 cut(s)	8, 77, 221, 248, 546, 570, 863, 896
CviQI	GTAC	1 cut(s)	786
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	5 cut(s)	20, 492, 651, 733, 811
DpnII	GATC	5 cut(s)	18, 490, 649, 731, 809
DraI	TTTAAA	1 cut(s)	538
Eam1104I	CTCTTC	4 cut(s)	20, 255, 518, 753
EarI	CTCTTC	4 cut(s)	20, 255, 518, 753
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	717
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	8 cut(s)	146, 307, 319, 362, 386, 748, 799, 880
FatI	CATG	8 cut(s)	142, 303, 315, 358, 382, 744, 795, 876
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	78, 81, 84
FokI	GGATG	3 cut(s)	161, 532, 859
Fsp4HI	GCNGC	3 cut(s)	78, 81, 84
FspBI	CTAG	2 cut(s)	87, 431
GlaI	GCGC	2 cut(s)	282, 687
GluI	GCNGC	3 cut(s)	78, 81, 84
HaeIII	GGCC	1 cut(s)	221
HhaI	GCGC	2 cut(s)	283, 688
Hin1II	CATG	8 cut(s)	146, 307, 319, 362, 386, 748, 799, 880
Hin6I	GCGC	2 cut(s)	281, 686
HinP1I	GCGC	2 cut(s)	281, 686
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	3 cut(s)	311, 406, 869
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	633, 664
Hpy188I	TCNGA	2 cut(s)	342, 649
Hpy188III	TCNNGA	3 cut(s)	22, 359, 394
Hpy8I	GTNNAC	2 cut(s)	633, 664
Hpy99I	CGWCG	2 cut(s)	742, 817
HpyAV	CCTTC	3 cut(s)	164, 211, 794
HpyCH4III	ACNGT	3 cut(s)	389, 414, 566
HpyCH4IV	ACGT	3 cut(s)	344, 635, 673
HpyCH4V	TGCA	2 cut(s)	319, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 227, 280, 694
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	3 cut(s)	344, 635, 673
Hsp92II	CATG	8 cut(s)	146, 307, 319, 362, 386, 748, 799, 880
HspAI	GCGC	2 cut(s)	281, 686
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	5 cut(s)	18, 490, 649, 731, 809
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	893
LpnPI	CCDG	6 cut(s)	305, 556, 556, 704, 731, 910
Lsp1109I	GCAGC	3 cut(s)	64, 67, 70
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	2 cut(s)	87, 431
MaeII	ACGT	3 cut(s)	344, 635, 673
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	5 cut(s)	20, 492, 651, 733, 811
MboI	GATC	5 cut(s)	18, 490, 649, 731, 809
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	9 cut(s)	52, 58, 91, 105, 293, 335, 512, 887, 943
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	8 cut(s)	21, 110, 285, 291, 294, 519, 619, 754
MslI	CAYNNNNRTG	2 cut(s)	147, 702
MspCI	CTTAAG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	719
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	2 cut(s)	281, 686
MwoI	GCNNNNNNNGC	4 cut(s)	83, 227, 280, 694
NdeII	GATC	5 cut(s)	18, 490, 649, 731, 809
NlaIII	CATG	8 cut(s)	146, 307, 319, 362, 386, 748, 799, 880
NlaIV	GGNNCC	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	123
PagI	TCATGA	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	311, 406, 869
PkrI	GCNGC	3 cut(s)	79, 82, 85
PsiI	TTATAA	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	717
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	1 cut(s)	895
PstNI	CAGNNNCTG	1 cut(s)	570
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	787
RsaNI	GTAC	1 cut(s)	786
RseI	CAYNNNNRTG	2 cut(s)	147, 702
SalI	GTCGAC	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	255
SatI	GCNGC	3 cut(s)	78, 81, 84
Sau3AI	GATC	5 cut(s)	18, 490, 649, 731, 809
ScrFI	CCNGG	1 cut(s)	719
SfaNI	GCATC	1 cut(s)	387
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	123
SmiMI	CAYNNNNRTG	2 cut(s)	147, 702
SmlI	CTYRAG	4 cut(s)	98, 443, 605, 623
SmoI	CTYRAG	4 cut(s)	98, 443, 605, 623
Sse9I	AATT	9 cut(s)	52, 58, 91, 105, 293, 335, 512, 887, 943
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	2 cut(s)	87, 431
StyD4I	CCNGG	1 cut(s)	717
TaaI	ACNGT	3 cut(s)	389, 414, 566
TaiI	ACGT	3 cut(s)	347, 638, 676
TaqI	TCGA	5 cut(s)	123, 395, 640, 663, 815
TaqII	GACCGA	1 cut(s)	896
TasI	AATT	9 cut(s)	52, 58, 91, 105, 293, 335, 512, 887, 943
TfiI	GAWTC	3 cut(s)	311, 406, 869
TscAI	CASTG	3 cut(s)	237, 571, 853
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	77, 80, 83
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	8 cut(s)	84, 183, 203, 347, 525, 536, 873, 882
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	3 cut(s)	237, 571, 853
Vha464I	CTTAAG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	2 cut(s)	87, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.