Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004116

Physical Location & Seq

Genomic Coordinates Forward (+)

6658545 .. 6662665

Gene Structure 4121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G036500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGAGAAGTGAGACTTGGCTTAGTTTGATTCGACCAGCAATGGCTGCCTTTTCCTGCCCTCTTCGAATTCTTCGTTCTTACACAACGGGAGCAGAATTGGAGCCTCAACTGTCCCCAAAGCTCATAAAGATCATGGAGCAGAGGCTGTCGCTTATCGAGCAGAGGAGTGCTTGTCTTCAAAATCTCATAAACCAGCCTGATGCCTCGGCTGAAGAGTATGCGAGGGCTAACAAGGAGCTTCGGAAACTCAGCGCTTCCATGGACCTTATAAATCAATTAAGATCCAACAGCAAGGAGATTGATGGTTTGAGGTCTCTCATGGATGAATGTTCTCAAGATAAAGACATGATTGATATGGCAAACAATGAATTGGGTCAAGCCATTGACGAAGAAAGAAGATTGCATGCTTCGTTACTCAAGTCCCTGCTTCCTAAGGATGATGCTGATGAGAGGGATTGCATACTGGAGGTTAGAGCAGGAACTGGTGGGGAGGAGGCTTCTTTATTTGCAATGGACATATTCAAAATGTATGATAGATTCTCGCACAAGAAAGGCTGGAAGTTTGAAGTGGTGGATATTACCGAGTCTGATCTTAAAGGATATAAGGAAGCTAGTGCAGCAATCTCAGGAGCTGATGTTTATGGGAAACTGAAATTTGAGAGTGGGATTCACAGAGTTCAGCGAGTTCCTGTGACAGAGAAGTCTGGACGTATTCACACTAGTGCTGTTTCTGTTGCTATCCTCCCTCAAGCTGATGAGGTAGATGTCCACCTGAGGAACGAGGATTTGAGAATTGATACTTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACCACCAACAGTGCTGTTAGAATAACTCATATTCCAACTGGCCTGACTGTAGCCATACAAGATGAGCGATCCCAACATATGAACAAGGCCAAGGGGCTTAAGGTGCTGTGTGCAAAGCTTTATGAGATAGAGAGGTCTAGAATCCAGAGCAGTCGGTCAAAACTTAGATCACAACAGATTGGTAGTGGGGATAGATCCGAACGCATCCGTACATACAACTTTCCTCAAGGGCGTGTAACTGATCATCGTGTTGGCATCACTCATCATTCAATAAATGATGTGATGCAAGGAGAGAATCTGGATGTATTTATTGATGCGCTTCTTTTGCAGGAGGAGATGGATGCGATTGCTTCTTTTGGTTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

402

Amino Acids

44.89

Weight (kDa)

6.17

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47020 AT2G47020 AT2G47020 AT2G47020 AT2G47020
fragaria_vesca	FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260
malus_domestica	MD05G1002600.v1.1
prunus_persica	Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1
pyrus_communis	pycom05g00250
rosa_chinensis	RchiOBHm_Chr2g0125161
rosa_laevigata	RLG00000018851
rosa_multiflora	Rmu_sc0003505.1_g000032
rosa_roxburghii	Rroxscaffold_2G00118220 Rroxscaffold_2G00118690
rosa_rugosa	Rorug02G0256000
rosa_samantha	Rh2AG314300 Rh2BG322500 Rh2DG340900
rosa_wichuraiana	Rw2G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AasI	GACNNNNNNGTC	1 cut(s)	700
AclWI	GGATC	3 cut(s)	276, 900, 1026
AcsI	RAATTY	2 cut(s)	66, 653
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	1048
AfeI	AGCGCT	1 cut(s)	253
AflII	CTTAAG	1 cut(s)	935
AgsI	TTSAA	4 cut(s)	179, 523, 566, 1107
AhlI	ACTAGT	1 cut(s)	719
AjuI	GAANNNNNNNTTGG	1 cut(s)	30
AleI	CACNNNNGTG	1 cut(s)	720
AluBI	AGCT	6 cut(s)	121, 238, 611, 632, 752, 955
AluI	AGCT	6 cut(s)	121, 238, 611, 632, 752, 955
Alw26I	GTCTC	2 cut(s)	5, 318
AlwI	GGATC	3 cut(s)	276, 900, 1026
AlwNI	CAGNNNCTG	3 cut(s)	145, 482, 632
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	2 cut(s)	877, 924
ApeKI	GCWGC	2 cut(s)	44, 617
ApoI	RAATTY	2 cut(s)	66, 653
AspLEI	GCGC	2 cut(s)	254, 1156
AspS9I	GGNCC	1 cut(s)	262
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	262
AxyI	CCTNAGG	2 cut(s)	432, 773
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	31, 629
BccI	CCATC	2 cut(s)	296, 1168
BclI	TGATCA	1 cut(s)	1078
BcoDI	GTCTC	2 cut(s)	5, 318
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	4 cut(s)	612, 720, 975, 1204
BfmI	CTRYAG	1 cut(s)	885
BfoI	RGCGCY	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	935
BglII	AGATCT	1 cut(s)	806
BisI	GCNGC	2 cut(s)	45, 618
BlsI	GCNGC	2 cut(s)	46, 619
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	7 cut(s)	190, 430, 1050, 1101, 1110, 1141, 1168
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	485
Bpu14I	TTCGAA	1 cut(s)	64
BpuEI	CTTGAG	4 cut(s)	318, 401, 732, 1047
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	204, 258, 927
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 621, 651
Bse1I	ACTGG	3 cut(s)	468, 487, 880
Bse21I	CCTNAGG	2 cut(s)	432, 773
Bse3DI	GCAATG	2 cut(s)	45, 516
BseDI	CCNNGG	3 cut(s)	204, 258, 927
BseGI	GGATG	5 cut(s)	328, 442, 1041, 1144, 1183
BseMI	GCAATG	2 cut(s)	45, 516
BseMII	CTCAG	3 cut(s)	262, 639, 764
BseNI	ACTGG	3 cut(s)	468, 487, 880
BseRI	GAGGAG	3 cut(s)	178, 506, 1184
BseXI	GCAGC	2 cut(s)	31, 629
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	879, 926
BslFI	GGGAC	2 cut(s)	97, 406
BsmAI	GTCTC	2 cut(s)	5, 318
BsmFI	GGGAC	2 cut(s)	97, 406
BsnI	GGCC	2 cut(s)	879, 926
Bso31I	GGTCTC	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	64
Bsp143I	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
Bsp19I	CCATGG	1 cut(s)	258
BspANI	GGCC	2 cut(s)	879, 926
BspCNI	CTCAG	3 cut(s)	261, 638, 765
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	3 cut(s)	276, 900, 1026
BspT104I	TTCGAA	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	45, 516
BsrI	ACTGG	3 cut(s)	468, 487, 880
BssECI	CCNNGG	3 cut(s)	204, 258, 927
BssMI	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
BssT1I	CCWWGG	2 cut(s)	258, 927
Bst4CI	ACNGT	3 cut(s)	111, 848, 886
Bst6I	CTCTTC	2 cut(s)	66, 207
BstAFI	CTTAAG	1 cut(s)	935
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	405, 831
BstDEI	CTNAG	6 cut(s)	20, 248, 432, 625, 773, 1001
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	5 cut(s)	328, 442, 1041, 1144, 1183
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	254, 1156
BstKTI	GATC	8 cut(s)	132, 284, 592, 809, 908, 1007, 1034, 1081
BstMAI	GTCTC	2 cut(s)	5, 318
BstMBI	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 157, 617, 940, 1162
BstNSI	RCATGY	2 cut(s)	407, 833
BstSFI	CTRYAG	1 cut(s)	885
BstV1I	GCAGC	2 cut(s)	31, 629
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	3 cut(s)	281, 806, 1031
BstYI	RGATCY	3 cut(s)	281, 806, 1031
Bsu36I	CCTNAGG	2 cut(s)	432, 773
BsuRI	GGCC	2 cut(s)	879, 926
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	5 cut(s)	328, 442, 1041, 1144, 1183
BtsIMutI	CAGTG	1 cut(s)	853
Cac8I	GCNNGC	2 cut(s)	405, 831
CaiI	CAGNNNCTG	3 cut(s)	145, 482, 632
CfoI	GCGC	2 cut(s)	254, 1156
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	1047
CviAII	CATG	6 cut(s)	133, 259, 319, 346, 404, 830
CviQI	GTAC	1 cut(s)	1047
DdeI	CTNAG	6 cut(s)	20, 248, 432, 625, 773, 1001
DpnI	GATC	8 cut(s)	131, 283, 591, 808, 907, 1006, 1033, 1080
DpnII	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
DrdI	GACNNNNNNGTC	1 cut(s)	700
DseDI	GACNNNNNNGTC	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	66, 207
EarI	CTCTTC	2 cut(s)	66, 207
Eco130I	CCWWGG	2 cut(s)	258, 927
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	231
Eco81I	CCTNAGG	2 cut(s)	432, 773
EcoRI	GAATTC	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	258, 927
ErhI	CCWWGG	2 cut(s)	258, 927
FaeI	CATG	6 cut(s)	136, 262, 322, 349, 407, 833
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	97, 406
FatI	CATG	6 cut(s)	132, 258, 318, 345, 403, 829
FauNDI	CATATG	1 cut(s)	915
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	2 cut(s)	45, 618
FokI	GGATG	5 cut(s)	335, 449, 1028, 1151, 1190
Fsp4HI	GCNGC	2 cut(s)	45, 618
FspBI	CTAG	4 cut(s)	612, 720, 975, 1204
GlaI	GCGC	2 cut(s)	253, 1155
GluI	GCNGC	2 cut(s)	45, 618
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	879, 926
HhaI	GCGC	2 cut(s)	254, 1156
Hin1II	CATG	6 cut(s)	136, 262, 322, 349, 407, 833
Hin6I	GCGC	2 cut(s)	252, 1154
HinP1I	GCGC	2 cut(s)	252, 1154
HindIII	AAGCTT	1 cut(s)	953
HinfI	GANTC	6 cut(s)	28, 537, 584, 667, 978, 1132
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	3 cut(s)	243, 589, 1036
Hpy188III	TCNNGA	6 cut(s)	335, 627, 705, 975, 982, 1136
Hpy8I	GTNNAC	1 cut(s)	769
HpyCH4III	ACNGT	3 cut(s)	111, 848, 886
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	8 cut(s)	403, 459, 509, 617, 833, 950, 1123, 1165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 157, 617, 940, 1162
HpyF3I	CTNAG	6 cut(s)	20, 248, 432, 625, 773, 1001
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	6 cut(s)	136, 262, 322, 349, 407, 833
HspAI	GCGC	2 cut(s)	252, 1154
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
LmnI	GCTCC	5 cut(s)	89, 100, 136, 235, 629
Lsp1109I	GCAGC	2 cut(s)	31, 629
LweI	GCATC	7 cut(s)	190, 430, 1050, 1101, 1110, 1141, 1168
MaeI	CTAG	4 cut(s)	612, 720, 975, 1204
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	3 cut(s)	411, 691, 1072
MalI	GATC	8 cut(s)	131, 283, 591, 808, 907, 1006, 1033, 1080
MboI	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
MboII	GAAGA	7 cut(s)	53, 62, 167, 224, 401, 408, 1191
MflI	RGATCY	3 cut(s)	281, 806, 1031
MluCI	AATT	6 cut(s)	66, 95, 275, 368, 653, 792
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	2 cut(s)	309, 896
MseI	TTAA	3 cut(s)	278, 594, 936
MslI	CAYNNNNRTG	1 cut(s)	720
MspCI	CTTAAG	1 cut(s)	935
MwoI	GCNNNNNNNGC	5 cut(s)	44, 157, 617, 940, 1162
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
NlaIII	CATG	6 cut(s)	136, 262, 322, 349, 407, 833
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	691
NspI	RCATGY	2 cut(s)	407, 833
NspV	TTCGAA	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	720
PaeI	GCATGC	2 cut(s)	407, 833
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PfeI	GAWTC	5 cut(s)	28, 537, 667, 978, 1132
PkrI	GCNGC	2 cut(s)	46, 619
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PsiI	TTATAA	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	262
PstNI	CAGNNNCTG	3 cut(s)	145, 482, 632
PsuI	RGATCY	3 cut(s)	281, 806, 1031
RsaI	GTAC	1 cut(s)	1048
RsaNI	GTAC	1 cut(s)	1047
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	3 cut(s)	278, 594, 936
SatI	GCNGC	2 cut(s)	45, 618
Sau3AI	GATC	8 cut(s)	129, 281, 589, 806, 905, 1004, 1031, 1078
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	593
SfaNI	GCATC	7 cut(s)	190, 430, 1050, 1101, 1110, 1141, 1168
SfcI	CTRYAG	1 cut(s)	885
SfuI	TTCGAA	1 cut(s)	64
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	5 cut(s)	333, 416, 747, 935, 1062
SmoI	CTYRAG	5 cut(s)	333, 416, 747, 935, 1062
SpeI	ACTAGT	1 cut(s)	719
SphI	GCATGC	2 cut(s)	407, 833
Sse9I	AATT	6 cut(s)	66, 95, 275, 368, 653, 792
SspMI	CTAG	4 cut(s)	612, 720, 975, 1204
StyI	CCWWGG	2 cut(s)	258, 927
TaaI	ACNGT	3 cut(s)	111, 848, 886
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	3 cut(s)	31, 64, 156
TaqII	GACCGA	1 cut(s)	981
TasI	AATT	6 cut(s)	66, 95, 275, 368, 653, 792
TfiI	GAWTC	5 cut(s)	28, 537, 667, 978, 1132
Tru1I	TTAA	3 cut(s)	278, 594, 936
Tru9I	TTAA	3 cut(s)	278, 594, 936
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	2 cut(s)	44, 617
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	3 cut(s)	339, 381, 932
TspGWI	ACGGA	1 cut(s)	1034
TspRI	CASTG	1 cut(s)	853
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	2 cut(s)	66, 653
XbaI	TCTAGA	1 cut(s)	974
XceI	RCATGY	2 cut(s)	407, 833
XspI	CTAG	4 cut(s)	612, 720, 975, 1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.