Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004116

Physical Location & Seq

Genomic Coordinates Forward (+)

50411140 .. 50416217

Gene Structure 5078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGACCTTATAAATCAGTTAAGAGCCATACACAAGGAGATTGATGGGTTGAGGTCACTCATGGCTGAATCTGCTCAAGATAAAGACATGCTTGATATGGTGACCACTGAGTTGGATCAGGCCATCAACGAAGAGAAAAGACTGCACCATTTGTTGCTCAAGACTCTACTCCCCAAGGATGATGCCGATGAGAGGGATTGCATATTGGAGGTTAGAGCAGGAACTGGTGGGGAGGAGGCTTCTTTGTTTGCAATGGACATATTTAAAATGTATGAGAGATTCTCTCACAATAAAGGCTGGATGTTTGAAGTGTTGGATATTACCGAGTCTGATCTTAAAGGATATAAGGAAGCAACTGCGGCAATCTCAGGGGCTGATGTTTATGGGAAACTTAAATTTGAGAGTGGTATTCACAGAGTACAGCGAGTTCCCGTGACAGAGAAGTCTGGACGCATTCATACTAGTGCTGTTTCTGTTGCTATCCTCCCTCAAGCTGATCAGGTAGATGTCCACCTGAGGAACGAAGATTTGAAAATTGATACCTATAGATCTGGTGGTTCTGGGGGTCAGCATGCAAATACTACAAACAGTGCGGTTAGAATAACTCATATTCCAACTGGCATGACCATAGCCATACAAGATGAACGATCCCAACATATGAACAAGGCCAAGGCACTTAAAGTACTGTGTGCAAAGCTATATGAGATGGAAAGGTCTAGACTACAGAACAATCGGTCAAAACTTCGATTAGAGCAGATTGGTAGTGGGGATCGATCTGAACGCATTCGTACATACAACTTTCCTCAAGGTCGTGTAACTGATCATCGTGTTGGCATTACTCATCATGCAATAAGTGATGTGATGCAGGGAGAGAATCTGGATGTGTTTGTTGATGCGCTTCTTTTGCAGCAGGAAATGGATGCAATCGCATCTTTCAGTTCTTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

316

Amino Acids

35.5

Weight (kDa)

5.92

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	3 - 159	2.4e-55	PCRF domain
RF-1	PF00472	167 - 276	1.1e-39	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47020 AT2G47020 AT2G47020 AT2G47020 AT2G47020
fragaria_vesca	FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260
malus_domestica	MD05G1002600.v1.1
prunus_persica	Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1
pyrus_communis	pycom05g00250
rosa_chinensis	RchiOBHm_Chr2g0125161
rosa_laevigata	RLG00000018851
rosa_multiflora	Rmu_sc0003505.1_g000032
rosa_roxburghii	Rroxscaffold_2G00118220 Rroxscaffold_2G00118690
rosa_rugosa	Rorug02G0256000
rosa_samantha	Rh2AG314300 Rh2BG322500 Rh2DG340900
rosa_wichuraiana	Rw2G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AasI	GACNNNNNNGTC	1 cut(s)	442
AciI	CCGC	2 cut(s)	359, 593
AclWI	GGATC	3 cut(s)	123, 642, 777
AcsI	RAATTY	1 cut(s)	395
AfaI	GTAC	3 cut(s)	420, 684, 790
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	308, 532
AhlI	ACTAGT	1 cut(s)	461
AluBI	AGCT	2 cut(s)	494, 697
AluI	AGCT	2 cut(s)	494, 697
AlwI	GGATC	3 cut(s)	123, 642, 777
AlwNI	CAGNNNCTG	2 cut(s)	224, 374
AoxI	GGCC	2 cut(s)	120, 666
ApeKI	GCWGC	1 cut(s)	907
ApoI	RAATTY	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	898
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	919
BccI	CCATC	3 cut(s)	38, 131, 700
BclI	TGATCA	2 cut(s)	496, 820
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	462, 717
BfmI	CTRYAG	2 cut(s)	544, 722
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	2 cut(s)	360, 908
BlsI	GCNGC	2 cut(s)	361, 909
BmcAI	AGTACT	1 cut(s)	684
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	5 cut(s)	172, 852, 883, 910, 938
BplI	GAGNNNNNCTC	4 cut(s)	266, 298, 268, 300
BpuEI	CTTGAG	4 cut(s)	60, 143, 474, 789
Bsa29I	ATCGAT	1 cut(s)	772
BsaJI	CCNNGG	2 cut(s)	174, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	229, 622
Bse21I	CCTNAGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	772
BseDI	CCNNGG	2 cut(s)	174, 669
BseGI	GGATG	4 cut(s)	184, 306, 886, 925
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	99, 381, 506
BseNI	ACTGG	2 cut(s)	229, 622
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	919
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	122, 668
BshVI	ATCGAT	1 cut(s)	772
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmI	GAATGC	2 cut(s)	453, 783
BsnI	GGCC	2 cut(s)	122, 668
Bsp143I	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
BspACI	CCGC	2 cut(s)	359, 593
BspANI	GGCC	2 cut(s)	122, 668
BspCNI	CTCAG	3 cut(s)	100, 380, 507
BspDI	ATCGAT	1 cut(s)	772
BspPI	GGATC	3 cut(s)	123, 642, 777
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	229, 622
BssECI	CCNNGG	2 cut(s)	174, 669
BssMI	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
BssT1I	CCWWGG	2 cut(s)	174, 669
Bst4CI	ACNGT	2 cut(s)	590, 687
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	3 cut(s)	108, 367, 515
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	184, 306, 886, 925
BstHHI	GCGC	1 cut(s)	898
BstKTI	GATC	8 cut(s)	118, 334, 499, 551, 650, 772, 776, 823
BstMBI	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 359, 904
BstNSI	RCATGY	2 cut(s)	91, 575
BstPI	GGTNACC	1 cut(s)	100
BstSFI	CTRYAG	2 cut(s)	544, 722
BstV1I	GCAGC	1 cut(s)	919
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	772
Bsu36I	CCTNAGG	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	122, 668
BsuTUI	ATCGAT	1 cut(s)	772
BtsCI	GGATG	4 cut(s)	184, 306, 886, 925
BtsIMutI	CAGTG	2 cut(s)	105, 595
Cac8I	GCNNGC	1 cut(s)	573
CaiI	CAGNNNCTG	2 cut(s)	224, 374
CfoI	GCGC	1 cut(s)	898
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	772
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	419, 683, 789
CviAII	CATG	5 cut(s)	61, 88, 572, 622, 845
CviQI	GTAC	3 cut(s)	419, 683, 789
DdeI	CTNAG	3 cut(s)	108, 367, 515
DpnI	GATC	8 cut(s)	117, 333, 498, 550, 649, 771, 775, 822
DpnII	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
DraI	TTTAAA	1 cut(s)	265
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	174, 669
Eco47I	GGWCC	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	174, 669
ErhI	CCWWGG	2 cut(s)	174, 669
FaeI	CATG	5 cut(s)	64, 91, 575, 625, 848
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	5 cut(s)	60, 87, 571, 621, 844
FauNDI	CATATG	1 cut(s)	657
FbaI	TGATCA	2 cut(s)	496, 820
Fnu4HI	GCNGC	2 cut(s)	360, 908
FokI	GGATG	4 cut(s)	191, 313, 893, 932
Fsp4HI	GCNGC	2 cut(s)	360, 908
FspBI	CTAG	2 cut(s)	462, 717
GlaI	GCGC	1 cut(s)	897
GluI	GCNGC	2 cut(s)	360, 908
HaeIII	GGCC	2 cut(s)	122, 668
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	898
Hin1II	CATG	5 cut(s)	64, 91, 575, 625, 848
Hin6I	GCGC	1 cut(s)	896
HinP1I	GCGC	1 cut(s)	896
HinfI	GANTC	5 cut(s)	68, 163, 279, 326, 874
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	331, 778
Hpy188III	TCNNGA	5 cut(s)	77, 160, 447, 717, 878
Hpy8I	GTNNAC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	590, 687
HpyCH4V	TGCA	9 cut(s)	145, 201, 251, 575, 692, 848, 865, 907, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 359, 904
HpyF3I	CTNAG	3 cut(s)	108, 367, 515
Hsp92II	CATG	5 cut(s)	64, 91, 575, 625, 848
HspAI	GCGC	1 cut(s)	896
Ksp22I	TGATCA	2 cut(s)	496, 820
Kzo9I	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
Lsp1109I	GCAGC	1 cut(s)	919
LweI	GCATC	5 cut(s)	172, 852, 883, 910, 938
MaeI	CTAG	2 cut(s)	462, 717
MaeIII	GTNAC	4 cut(s)	54, 100, 433, 814
MalI	GATC	8 cut(s)	117, 333, 498, 550, 649, 771, 775, 822
MboI	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
MboII	GAAGA	3 cut(s)	143, 536, 933
MflI	RGATCY	1 cut(s)	548
MluCI	AATT	2 cut(s)	395, 534
MlyI	GAGTC	2 cut(s)	157, 335
MmeI	TCCRAC	3 cut(s)	93, 294, 638
MnlI	CCTC	9 cut(s)	45, 186, 202, 226, 229, 494, 498, 510, 813
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	5 cut(s)	20, 264, 336, 393, 678
MslI	CAYNNNNRTG	1 cut(s)	462
Mva1269I	GAATGC	2 cut(s)	453, 783
MwoI	GCNNNNNNNGC	3 cut(s)	71, 359, 904
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
NlaIII	CATG	5 cut(s)	64, 91, 575, 625, 848
NmuCI	GTSAC	3 cut(s)	54, 100, 433
NspI	RCATGY	2 cut(s)	91, 575
PaeI	GCATGC	1 cut(s)	575
PctI	GAATGC	2 cut(s)	453, 783
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	3 cut(s)	68, 279, 874
PkrI	GCNGC	2 cut(s)	361, 909
PleI	GAGTC	2 cut(s)	157, 334
PpsI	GAGTC	2 cut(s)	157, 334
PsiI	TTATAA	1 cut(s)	11
PspEI	GGTNACC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PstNI	CAGNNNCTG	2 cut(s)	224, 374
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	3 cut(s)	420, 684, 790
RsaNI	GTAC	3 cut(s)	419, 683, 789
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	20, 264, 336, 393, 678
SatI	GCNGC	2 cut(s)	360, 908
Sau3AI	GATC	8 cut(s)	115, 331, 496, 548, 647, 769, 773, 820
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	684
SchI	GAGTC	2 cut(s)	157, 335
SfaNI	GCATC	5 cut(s)	172, 852, 883, 910, 938
SfcI	CTRYAG	2 cut(s)	544, 722
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	4 cut(s)	75, 158, 489, 804
SmoI	CTYRAG	4 cut(s)	75, 158, 489, 804
SpeI	ACTAGT	1 cut(s)	461
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	2 cut(s)	395, 534
SsiI	CCGC	2 cut(s)	359, 593
SspMI	CTAG	2 cut(s)	462, 717
StyI	CCWWGG	2 cut(s)	174, 669
TaaI	ACNGT	2 cut(s)	590, 687
TaqI	TCGA	2 cut(s)	745, 772
TaqII	GACCGA	1 cut(s)	723
TasI	AATT	2 cut(s)	395, 534
TatI	WGTACW	2 cut(s)	418, 682
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	3 cut(s)	68, 279, 874
Tru1I	TTAA	5 cut(s)	20, 264, 336, 393, 678
Tru9I	TTAA	5 cut(s)	20, 264, 336, 393, 678
TscAI	CASTG	2 cut(s)	112, 595
TseFI	GTSAC	3 cut(s)	54, 100, 433
TseI	GCWGC	1 cut(s)	907
Tsp45I	GTSAC	3 cut(s)	54, 100, 433
TspDTI	ATGAA	3 cut(s)	446, 657, 674
TspRI	CASTG	2 cut(s)	112, 595
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	395
XbaI	TCTAGA	1 cut(s)	716
XceI	RCATGY	2 cut(s)	91, 575
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	2 cut(s)	462, 717
ZrmI	AGTACT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.