Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004116

Physical Location & Seq

Genomic Coordinates Forward (+)

305537 .. 308280

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00250.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAGAAGCCGAGTGTGGCGTAATTTGGTCCGACCAGCAGTGGCTGCCTTTTCCCATCCTTTTCGAATTCTTCGTTCATTCTCAACGGAATTGGAGCCTGATTTATCTCCGAAACTTATTAAGATCATGGAGCAAAGGTTATCGCATATCGAGCAGAGGAGTGGTTTTCTTCACAATCTCATTAACCAGCCTGATGCCTCGGCAGAAGAGTATGCAAGGGCAAACAAGGAGCTACGGAAACTCAGCACTTCCATGGACCTTATAAGTCGTCTAAGAGCCACAACCAAGGAGATTAATGGTTTGAGGACTCTCATCGATGAATGTTCTCAAGAAAAAGACATGCTTGATATGGTAACTACCGAATTGGATCAAGCCATCCACGAAGAAAGAAGGCTGCACAATTTGTTGCTCAAGTCCCTGCTTCCTAAGGATGATGCTGATGAGAGGGATTGCATATTAGAGGTCAGAGCAGGAACTGGTGGGGACGAGGCTTCTTTGTTTGCAATGGACATATTTAAAATGTATGATAGATTCTCACAAAAGAAAGGCTGGAAGTTTGAAGTGGTGGATATAACTGAGTCTGATCTTAAAGGATATAAGGAAGCTACTGCAGCGATCTCAGGAGCTGATGTTTATGGGAAACTTAAATTTGAGAGTGGGGTTCACAGAGTACAGCGAGTTCCTGTGACAGAGAAGTCTGGACGTATTCACACTAGTGCTGTTTCTGTTGCTATCCTTCCTCAAGCTGATGAGGTAGATGTCCACCTGAGGAACGAAGATTTGAGAATTGACACGTATAGATCTGGTGGTTCAGGTGGTCAACATGCAAATACAACTAACAGTGCTGTTAGAATAACTCATATTCCAACTGGCATGACTGTAGCCATACAAGACGAGCGATCCCAACATATGAACAAAGCCAAGGCACTTAAGGTGTTGTGTGCAAAGCTTTATGAGATAGAGAGGTCTAGACTTCACGCCAATCGAACAAAACTTCGATCTCAACAGATTGGTAGTGGGGATAGATCTGAACGCATCCGTACATACAATTTTCCTCAAGGACGTGTAACGGATCACCGTGTTGGCATCACTCATCATTCGATAAATGATGTGATGCAGGGAGAGAATCTGGATGTATTTATTGATGCCCTTCTTTTGCAAGAAGAAATGGATGCAATTGCATCTTTCAGTTCTTCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

401

Amino Acids

45.27

Weight (kDa)

6.96

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47020 AT2G47020 AT2G47020 AT2G47020 AT2G47020
fragaria_vesca	FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260
malus_domestica	MD05G1002600.v1.1
prunus_persica	Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1
pyrus_communis	pycom05g00250
rosa_chinensis	RchiOBHm_Chr2g0125161
rosa_laevigata	RLG00000018851
rosa_multiflora	Rmu_sc0003505.1_g000032
rosa_roxburghii	Rroxscaffold_2G00118220 Rroxscaffold_2G00118690
rosa_rugosa	Rorug02G0256000
rosa_samantha	Rh2AG314300 Rh2BG322500 Rh2DG340900
rosa_wichuraiana	Rw2G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AasI	GACNNNNNNGTC	1 cut(s)	694
AclWI	GGATC	3 cut(s)	375, 894, 1080
AcsI	RAATTY	2 cut(s)	66, 647
AfaI	GTAC	2 cut(s)	672, 1042
AflII	CTTAAG	1 cut(s)	929
AflIII	ACRYGT	2 cut(s)	792, 1063
AgsI	TTSAA	1 cut(s)	560
AhlI	ACTAGT	1 cut(s)	713
AjiI	CACGTC	1 cut(s)	1064
AleI	CACNNNNGTG	1 cut(s)	714
AluBI	AGCT	5 cut(s)	232, 605, 626, 746, 949
AluI	AGCT	5 cut(s)	232, 605, 626, 746, 949
AlwI	GGATC	3 cut(s)	375, 894, 1080
AlwNI	CAGNNNCTG	3 cut(s)	44, 476, 626
ApeKI	GCWGC	3 cut(s)	44, 394, 611
ApoI	RAATTY	2 cut(s)	66, 647
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	28, 256
AsuHPI	GGTGA	1 cut(s)	1067
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	28, 256
AxyI	CCTNAGG	2 cut(s)	426, 767
BbvI	GCAGC	3 cut(s)	31, 381, 623
BccI	CCATC	2 cut(s)	63, 383
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	2 cut(s)	714, 969
BfmI	CTRYAG	2 cut(s)	609, 879
BfrI	CTTAAG	1 cut(s)	929
BglII	AGATCT	2 cut(s)	800, 1025
BisI	GCNGC	3 cut(s)	45, 395, 612
BlsI	GCNGC	3 cut(s)	46, 396, 613
Bme18I	GGWCC	2 cut(s)	28, 256
BmgBI	CACGTC	1 cut(s)	1064
BmgT120I	GGNCC	2 cut(s)	28, 256
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	8 cut(s)	184, 424, 1044, 1095, 1104, 1135, 1162, 1190
Bpu14I	TTCGAA	1 cut(s)	64
BpuEI	CTTGAG	4 cut(s)	312, 395, 726, 1041
Bsa29I	ATCGAT	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	795
BsaJI	CCNNGG	4 cut(s)	198, 252, 285, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 615, 645
Bse1I	ACTGG	2 cut(s)	481, 874
Bse21I	CCTNAGG	2 cut(s)	426, 767
Bse3DI	GCAATG	1 cut(s)	510
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	4 cut(s)	198, 252, 285, 921
BseGI	GGATG	6 cut(s)	55, 375, 436, 1035, 1138, 1177
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	4 cut(s)	256, 567, 633, 758
BseNI	ACTGG	2 cut(s)	481, 874
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	31, 381, 623
BsgI	GTGCAG	1 cut(s)	380
BshVI	ATCGAT	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	400, 497
BsmFI	GGGAC	2 cut(s)	400, 497
Bsp119I	TTCGAA	1 cut(s)	64
Bsp143I	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
Bsp19I	CCATGG	1 cut(s)	252
BspCNI	CTCAG	4 cut(s)	255, 568, 632, 759
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	3 cut(s)	375, 894, 1080
BspT104I	TTCGAA	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	481, 874
BssECI	CCNNGG	4 cut(s)	198, 252, 285, 921
BssMI	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
BssT1I	CCWWGG	3 cut(s)	252, 285, 921
Bst4CI	ACNGT	3 cut(s)	842, 880, 1079
Bst6I	CTCTTC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	929
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	795
BstBI	TTCGAA	1 cut(s)	64
BstDEI	CTNAG	6 cut(s)	242, 272, 426, 576, 619, 767
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	6 cut(s)	55, 375, 436, 1035, 1138, 1177
BstKTI	GATC	9 cut(s)	126, 370, 586, 618, 803, 902, 1001, 1028, 1075
BstMBI	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 151, 611
BstNSI	RCATGY	2 cut(s)	343, 827
BstSFI	CTRYAG	2 cut(s)	609, 879
BstV1I	GCAGC	3 cut(s)	31, 381, 623
BstX2I	RGATCY	2 cut(s)	800, 1025
BstYI	RGATCY	2 cut(s)	800, 1025
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	2 cut(s)	426, 767
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	1064
BtsCI	GGATG	6 cut(s)	55, 375, 436, 1035, 1138, 1177
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	45, 847
CaiI	CAGNNNCTG	3 cut(s)	44, 476, 626
Cfr13I	GGNCC	2 cut(s)	28, 256
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	671, 1041
CviAII	CATG	5 cut(s)	127, 253, 340, 824, 874
CviQI	GTAC	2 cut(s)	671, 1041
DdeI	CTNAG	6 cut(s)	242, 272, 426, 576, 619, 767
DpnI	GATC	9 cut(s)	125, 369, 585, 617, 802, 901, 1000, 1027, 1074
DpnII	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
DraI	TTTAAA	1 cut(s)	517
DrdI	GACNNNNNNGTC	1 cut(s)	694
DseDI	GACNNNNNNGTC	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	3 cut(s)	252, 285, 921
Eco47I	GGWCC	2 cut(s)	28, 256
Eco81I	CCTNAGG	2 cut(s)	426, 767
EcoRI	GAATTC	1 cut(s)	66
EcoT14I	CCWWGG	3 cut(s)	252, 285, 921
ErhI	CCWWGG	3 cut(s)	252, 285, 921
FaeI	CATG	5 cut(s)	130, 256, 343, 827, 877
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	2 cut(s)	400, 497
FatI	CATG	5 cut(s)	126, 252, 339, 823, 873
FauNDI	CATATG	1 cut(s)	909
Fnu4HI	GCNGC	3 cut(s)	45, 395, 612
FokI	GGATG	6 cut(s)	42, 362, 443, 1022, 1145, 1184
Fsp4HI	GCNGC	3 cut(s)	45, 395, 612
FspBI	CTAG	2 cut(s)	714, 969
GluI	GCNGC	3 cut(s)	45, 395, 612
Hin1II	CATG	5 cut(s)	130, 256, 343, 827, 877
HincII	GTYRAC	1 cut(s)	821
HindII	GTYRAC	1 cut(s)	821
HindIII	AAGCTT	1 cut(s)	947
HinfI	GANTC	4 cut(s)	307, 531, 578, 1126
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	3 cut(s)	664, 763, 821
Hpy188I	TCNGA	5 cut(s)	32, 111, 467, 583, 1030
Hpy188III	TCNNGA	5 cut(s)	329, 621, 699, 969, 1130
Hpy8I	GTNNAC	3 cut(s)	664, 763, 821
HpyAV	CCTTC	3 cut(s)	384, 746, 1160
HpyCH4III	ACNGT	3 cut(s)	842, 880, 1079
HpyCH4IV	ACGT	3 cut(s)	703, 794, 1063
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 151, 611
HpyF3I	CTNAG	6 cut(s)	242, 272, 426, 576, 619, 767
HpySE526I	ACGT	3 cut(s)	703, 794, 1063
Hsp92II	CATG	5 cut(s)	130, 256, 343, 827, 877
Kzo9I	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
LmnI	GCTCC	4 cut(s)	94, 130, 229, 623
Lsp1109I	GCAGC	3 cut(s)	31, 381, 623
LweI	GCATC	8 cut(s)	184, 424, 1044, 1095, 1104, 1135, 1162, 1190
MaeI	CTAG	2 cut(s)	714, 969
MaeII	ACGT	3 cut(s)	703, 794, 1063
MaeIII	GTNAC	3 cut(s)	352, 685, 1066
MalI	GATC	9 cut(s)	125, 369, 585, 617, 802, 901, 1000, 1027, 1074
MboI	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
MboII	GAAGA	7 cut(s)	62, 161, 218, 395, 788, 1175, 1185
MfeI	CAATTG	1 cut(s)	1176
MflI	RGATCY	2 cut(s)	800, 1025
MluCI	AATT	9 cut(s)	22, 66, 89, 362, 400, 647, 786, 1048, 1176
MlyI	GAGTC	2 cut(s)	301, 587
MmeI	TCCRAC	2 cut(s)	55, 890
MseI	TTAA	7 cut(s)	120, 183, 294, 516, 588, 645, 930
MslI	CAYNNNNRTG	2 cut(s)	251, 714
MspCI	CTTAAG	1 cut(s)	929
MunI	CAATTG	1 cut(s)	1176
MwoI	GCNNNNNNNGC	3 cut(s)	44, 151, 611
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
NlaIII	CATG	5 cut(s)	130, 256, 343, 827, 877
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	2 cut(s)	35, 179
NmuCI	GTSAC	1 cut(s)	685
NspI	RCATGY	2 cut(s)	343, 827
NspV	TTCGAA	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	531, 1126
PkrI	GCNGC	3 cut(s)	46, 396, 613
PleI	GAGTC	2 cut(s)	301, 586
PpsI	GAGTC	2 cut(s)	301, 586
Ppu21I	YACGTR	1 cut(s)	795
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	28, 256
PsrI	GAACNNNNNNTAC	2 cut(s)	663, 695
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	3 cut(s)	44, 476, 626
PsuI	RGATCY	2 cut(s)	800, 1025
RsaI	GTAC	2 cut(s)	672, 1042
RsaNI	GTAC	2 cut(s)	671, 1041
RseI	CAYNNNNRTG	2 cut(s)	251, 714
SaqAI	TTAA	7 cut(s)	120, 183, 294, 516, 588, 645, 930
SatI	GCNGC	3 cut(s)	45, 395, 612
Sau3AI	GATC	9 cut(s)	123, 367, 583, 615, 800, 899, 998, 1025, 1072
Sau96I	GGNCC	2 cut(s)	28, 256
SchI	GAGTC	2 cut(s)	301, 587
SfaNI	GCATC	8 cut(s)	184, 424, 1044, 1095, 1104, 1135, 1162, 1190
SfcI	CTRYAG	2 cut(s)	609, 879
SfuI	TTCGAA	1 cut(s)	64
SinI	GGWCC	2 cut(s)	28, 256
SmiMI	CAYNNNNRTG	2 cut(s)	251, 714
SmlI	CTYRAG	5 cut(s)	327, 410, 741, 929, 1056
SmoI	CTYRAG	5 cut(s)	327, 410, 741, 929, 1056
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	9 cut(s)	22, 66, 89, 362, 400, 647, 786, 1048, 1176
SspMI	CTAG	2 cut(s)	714, 969
StyI	CCWWGG	3 cut(s)	252, 285, 921
TaaI	ACNGT	3 cut(s)	842, 880, 1079
TaiI	ACGT	3 cut(s)	706, 797, 1066
TaqI	TCGA	6 cut(s)	64, 150, 315, 985, 997, 1100
TasI	AATT	9 cut(s)	22, 66, 89, 362, 400, 647, 786, 1048, 1176
TatI	WGTACW	1 cut(s)	670
TfiI	GAWTC	2 cut(s)	531, 1126
Tru1I	TTAA	7 cut(s)	120, 183, 294, 516, 588, 645, 930
Tru9I	TTAA	7 cut(s)	120, 183, 294, 516, 588, 645, 930
TscAI	CASTG	2 cut(s)	45, 847
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	3 cut(s)	44, 394, 611
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	66, 333, 926
TspGWI	ACGGA	4 cut(s)	101, 250, 1028, 1085
TspRI	CASTG	2 cut(s)	45, 847
Vha464I	CTTAAG	1 cut(s)	929
VpaK11BI	GGWCC	2 cut(s)	28, 256
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	66, 647
XbaI	TCTAGA	1 cut(s)	968
XceI	RCATGY	2 cut(s)	343, 827
XspI	CTAG	2 cut(s)	714, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.